1DV4
PARTIAL STRUCTURE OF 16S RNA OF THE SMALL RIBOSOMAL SUBUNIT FROM THERMUS THERMOPHILUS
X-RAY DIFFRACTION
Crystal Data
Unit Cell | |
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Length ( Å ) | Angle ( ˚ ) |
a = 407.1 | α = 90 |
b = 407.1 | β = 90 |
c = 176.008 | γ = 90 |
Symmetry | |
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Space Group | P 41 21 2 |
Diffraction
Diffraction Experiment | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ID # | Crystal ID | Scattering Type | Data Collection Temperature | Detector | Detector Type | Details | Collection Date | Monochromator | Protocol | |||||
1 | 1 | x-ray | M | MAD | ||||||||||
2 | 1 | |||||||||||||
3 | 1 | |||||||||||||
4 | 1 | |||||||||||||
5 | 1 |
Radiation Source | |||||
---|---|---|---|---|---|
ID # | Source | Type | Wavelength List | Synchrotron Site | Beamline |
1 | SYNCHROTRON | EMBL/DESY, HAMBURG BEAMLINE BW7B | 0.850, 1.300 | EMBL/DESY, HAMBURG | BW7B |
2 | SYNCHROTRON | MPG/DESY, HAMBURG BEAMLINE BW6 | 0.850, 1.300 | MPG/DESY, HAMBURG | BW6 |
3 | SYNCHROTRON | CHESS BEAMLINE F1 | 0.850, 1.300 | CHESS | F1 |
4 | SYNCHROTRON | APS BEAMLINE 19-ID | 0.850, 1.300 | APS | 19-ID |
5 | SYNCHROTRON | ESRF BEAMLINE ID2 | 0.850, 1.300 | ESRF | ID2 |
Data Collection
Overall | |||||||||||||||||||
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ID # | Resolution (High) | Resolution (Low) | Percent Possible (Observed) | R Sym I (Observed) | Net I Over Average Sigma (I) | Redundancy | Number Reflections (All) | Number Reflections (Observed) | Observed Criterion Sigma (F) | Observed Criterion Sigma (I) | B (Isotropic) From Wilson Plot | ||||||||
1 | 4.5 | 257 | 91.1 | 12.5 | 4 | 85991 | -2.5 |
Highest Resolution Shell | |||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ID # | Resolution (High) | Resolution (Low) | Percent Possible (All) | Percent Possible (Observed) | Mean I Over Sigma (Observed) | Redundancy | Number Unique Reflections (All) | ||||||||||||
1 | 4.5 | 91.1 | 2 |
Refinement
Statistics | |||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Diffraction ID | Structure Solution Method | Resolution (High) | Resolution (Low) | Number Reflections (All) | Number Reflections (Observed) | Number Reflections (R-Free) | Percent Reflections (Observed) | R-Work | R-Free | Mean Isotropic B | |||||||||
X-RAY DIFFRACTION | MIRAS | 4.5 | 30 | 85991 | 85991 |
Temperature Factor Modeling | ||||||
---|---|---|---|---|---|---|
Anisotropic B[1][1] | Anisotropic B[1][2] | Anisotropic B[1][3] | Anisotropic B[2][2] | Anisotropic B[2][3] | Anisotropic B[3][3] | |
Non-Hydrogen Atoms Used in Refinement | |
---|---|
Non-Hydrogen Atoms | Number |
Protein Atoms | 280 |
Nucleic Acid Atoms | 3594 |
Solvent Atoms | |
Heterogen Atoms | 82 |
Software
Software | |
---|---|
Software Name | Purpose |
SHARP | phasing |
O | model building |