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EIAV DUTPASE DUDP/STRONTIUM COMPLEX
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1DUP PDB ENTRY 1DUP
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7 DROP: 3.0 MG/ML PROTEIN, 0.05 M IMIDAZOL MALATE BUFFER, PH 7.0, 21% PEG 400, 20 MM SRCL2, 5 MM DUDP; WELL: 0.1 M IMIDAZOLE MALATE BUFFER, PH 7.0, 42% PEG 400
Crystal Properties Matthews coefficient Solvent content 3.43 64
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 106.7 α = 90 b = 106.7 β = 90 c = 106.7 γ = 90
Symmetry Space Group P 41 3 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 277 IMAGE PLATE MARRESEARCH MIRRORS 1995-10-26 M
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE BW7B EMBL/DESY, HAMBURG BW7B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.05 25 100 0.124 0.124 17.7 10.5 13598 -3 22.9
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.05 2.09 100 0.686 0.686 3.8 10
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R PDB ENTRY 1DUP 2.05 20 13538 668 100 0.168 0.167 0.1573 0.201 RANDOM 27.9
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 27.9 27.9 27.9
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 26.7 p_staggered_tor 13.4 p_scangle_it 7.8 p_scbond_it 6.1 p_planar_tor 6.1 p_mcangle_it 3.8 p_mcbond_it 2.9 p_multtor_nbd 0.26 p_chiral_restr 0.216 p_singtor_nbd 0.19
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 26.7 p_staggered_tor 13.4 p_scangle_it 7.8 p_scbond_it 6.1 p_planar_tor 6.1 p_mcangle_it 3.8 p_mcbond_it 2.9 p_multtor_nbd 0.26 p_chiral_restr 0.216 p_singtor_nbd 0.19 p_xyhbond_nbd 0.15 p_planar_d 0.041 p_angle_d 0.04 p_bond_d 0.019 p_plane_restr 0.011 p_angle_deg p_hb_or_metal_coord p_xhyhbond_nbd p_orthonormal_tor p_special_tor
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 919 Nucleic Acid Atoms Solvent Atoms 80 Heterogen Atoms 25
Software Software Software Name Purpose AMoRE phasing REFMAC refinement DENZO data reduction SCALEPACK data scaling