1DU6
SOLUTION STRUCTURE OF THE TRUNCATED PBX HOMEODOMAIN
SOLUTION NMR
NMR Experiment | ||||||||
---|---|---|---|---|---|---|---|---|
Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 3D_15N-separated_NOESY | 2.5 mM PBX U-15N; 10 mM phosphate buffer; 1 mM DTT; 90% H2O, 10% D2O | 90% H2O/10% D2O | 4.8 | ambient | 303 | ||
2 | HNHA | 2.5 mM PBX U-15N; 10 mM phosphate buffer; 1 mM DTT; 90% H2O, 10% D2O | 90% H2O/10% D2O | 4.8 | ambient | 303 | ||
3 | 2D NOESY | 2 mM PBX; 1mM DTT; 90% H2O, 10% D2O | 90% H2O/10% D2O | 6.0 | ambient | 303 | ||
4 | 2D NOESY | 4 mM PBX; 20 mM phosphate buffer; 1 mM DTT; 100% D2O | 100% D2O | 6.0 | ambient | 303 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | DRX | 500 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
dynamical annealing | 1338 restraints, 1268 NOE-derived distance constraints, 48 dihedral angle restraints, 22 distance restraints from hydrogen bonds | XwinNMR |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 30 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | collection | XwinNMR | 2.0 | Bruker |
2 | processing | Gifa | 4.2 | Pons, Malliavin, Delsuc |
3 | structure solution | CNS | 0.5 | Brunger |
4 | data analysis | XEASY | 1.3.13 | Bartels, Xia, Billeter, Guntert, Wuthrich |
5 | refinement | CNS | 0.5 | Brunger |