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STAPHOPAIN, CYSTEINE PROTEINASE FROM STAPHYLOCOCCUS AUREUS V8
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6 5 M AMMONIUM ACETATE, 2MM DTT, 5MM E-64, 50 MM MES/TRIS BUFFER PH 6.0 5MM E-64
Crystal Properties Matthews coefficient Solvent content 2.62 53
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 61.139 α = 90 b = 61.139 β = 90 c = 195.063 γ = 120
Symmetry Space Group P 65 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 283 IMAGE PLATE MARRESEARCH MIRRORS 1994-02-26 M
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON MPG/DESY, HAMBURG BEAMLINE BW6 MPG/DESY, HAMBURG BW6
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.72 46.6 82.3 0.062 20.8 2 19765 16.85
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.72 1.8 63 0.07 10 1.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MIR AT LAST STEPS OF REFINEMENT 1.75 50 18172 981 82.5 0.183 0.2 0.239 RANDOM 20.66
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 34.4 p_staggered_tor 15.6 p_planar_tor 4.5 p_scangle_it 3.9 p_mcangle_it 2.7 p_scbond_it 2.6 p_mcbond_it 1.9 p_multtor_nbd 0.255 p_chiral_restr 0.18 p_singtor_nbd 0.179
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 34.4 p_staggered_tor 15.6 p_planar_tor 4.5 p_scangle_it 3.9 p_mcangle_it 2.7 p_scbond_it 2.6 p_mcbond_it 1.9 p_multtor_nbd 0.255 p_chiral_restr 0.18 p_singtor_nbd 0.179 p_xyhbond_nbd 0.118 p_planar_d 0.041 p_angle_d 0.033 p_plane_restr 0.024 p_bond_d 0.021 p_angle_deg p_hb_or_metal_coord p_xhyhbond_nbd p_orthonormal_tor p_special_tor
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1387 Nucleic Acid Atoms Solvent Atoms 121 Heterogen Atoms 29
Software Software Software Name Purpose CCP4 model building REFMAC refinement DENZO data reduction SCALEPACK data scaling CCP4 phasing