Find PDB structures and Computed Structure Models (CSM) by combining queries from tools in this suite: Attribute Search, Sequence Similarity, Sequence Motif, 3D Similarity, and 3D Motif with 'AND' logic.
NMR STRUCTURES OF B-DNA D(CTACTGCTTTAG).D(CTAAAGCAGTAG)
SOLUTION NMR
NMR Experiment
Experiment
Type
Sample Contents
Solvent
Ionic Strength
pH
Pressure
Temperature (K)
Spectrometer
1
2D NOESY
4 MM DNA DUPLEX, 0.4 ML POTASSIUM DIHYDROGEN PHOSPHATE DISODIUM HYDROGEM
PHOSPHATE BUFFER; 100% D2O
0.1
6.9
AMBIENT
308
2
P-COSY
4 MM DNA DUPLEX, 0.4 ML POTASSIUM DIHYDROGEN PHOSPHATE DISODIUM HYDROGEM
PHOSPHATE BUFFER; 100% D2O
0.1
6.9
AMBIENT
308
3
2D_31P/1H HETEROTOCSY
4 MM DNA DUPLEX, 0.4 ML POTASSIUM DIHYDROGEN PHOSPHATE DISODIUM HYDROGEM
PHOSPHATE BUFFER; 100% D2O
0.1
6.9
AMBIENT
308
4
2D NOESY
4 MM DNA DUPLEX, 0.4 ML POTASSIUM DIHYDROGEN PHOSPHATE DISODIUM HYDROGEM
PHOSPHATE BUFFER; 90% H2O, 10%D2O
0.1
6.9
AMBIENT
283
NMR Spectrometer Information
Spectrometer
Manufacturer
Model
Field Strength
1
Bruker
AMX
500
2
Bruker
AMX
500
NMR Refinement
Method
Details
Software
MOLECULAR DYNAMICS, MATRIX RELAXATION
MODEL 1: AVERAGE OF THE EIGHT STRUCTURES OBTAINED WITH JUMNA AND AMBER94 AS
FORCE FIELD. MODEL 2: AVERAGE OF THE EIGHT STRUCTURES OBTAINED WITH JUMNA AND
FLEX AS FORCE FIELD. MODEL 3: AVERAGE OF THE SIX STRUCTURES OBTAINED WITH X-
PLOR.
JUMNA
NMR Ensemble Information
Conformer Selection Criteria
back calculated data agree with experimental NOESY spectrum