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MONOCLONAL ANTIBODY FRAGMENT FV4155 FROM E. COLI
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1NBV PDB ENTRY 1NBV
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7 PROTEIN WAS CRYSTALLIZED FROM 18% (W/V) PEG 8000, 200MM ZN ACETATE AND 100MM NA CACODYLATE, PH 7.0
Crystal Properties Matthews coefficient Solvent content 2.36 48
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 90 α = 90 b = 90 β = 90 c = 59.6 γ = 90
Symmetry Space Group P 4 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS IIC MSC/YALE MIRRORS 1996-01-18 M
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RUH2R
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 20 97.1 0.064 9.5 7.4 14295 3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.1 2.17 98.9 0.268 2.8 7.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1NBV 2.1 10 13154 12496 658 93.6 0.178 0.1758 0.247 0.2364 RANDOM 19.76
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 23.019 p_staggered_tor 16.275 p_scangle_it 6.692 p_planar_tor 5.279 p_scbond_it 4.994 p_mcangle_it 2.097 p_mcbond_it 1.346 p_multtor_nbd 0.194 p_xyhbond_nbd 0.178 p_singtor_nbd 0.175
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 23.019 p_staggered_tor 16.275 p_scangle_it 6.692 p_planar_tor 5.279 p_scbond_it 4.994 p_mcangle_it 2.097 p_mcbond_it 1.346 p_multtor_nbd 0.194 p_xyhbond_nbd 0.178 p_singtor_nbd 0.175 p_chiral_restr 0.1 p_angle_d 0.037 p_planar_d 0.037 p_plane_restr 0.012 p_bond_d 0.011 p_angle_deg p_hb_or_metal_coord p_xhyhbond_nbd p_orthonormal_tor p_special_tor
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1800 Nucleic Acid Atoms Solvent Atoms 198 Heterogen Atoms 34
Software Software Software Name Purpose MOSFLM data reduction ROTAVATA data reduction AMoRE phasing PROLSQ refinement CCP4 data scaling