1CFS

ANTI-P24 (HIV-1) FAB FRAGMENT CB41 COMPLEXED WITH AN EPITOPE-UNRELATED PEPTIDE


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
16.515% POLYETHYLENE GLYCOL 4000, 0.1 M (NH4)2SO4, 0.2% ETHANOL, pH 6.5
Crystal Properties
Matthews coefficientSolvent content
2.755

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 85.32α = 90
b = 85.32β = 90
c = 136.77γ = 90
Symmetry
Space GroupP 43 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray288IMAGE PLATEMARRESEARCHBENT MIRROR1996-11-01MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONEMBL/DESY, HAMBURG BEAMLINE X11EMBL/DESY, HAMBURGX11

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.75721000.0622.413769231
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
2.754.1

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Cut-off Sigma (F)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2.75722129012836015091000.2320.332RANDOM
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
RMS Deviations
KeyRefinement Restraint Deviation
p_special_tor85.2
p_staggered_tor27.8
p_transverse_tor24.8
p_planar_tor8.9
p_mcangle_it2.626
p_scangle_it2.072
p_mcbond_it1.49
p_scbond_it1.178
p_chiral_restr0.78
p_multtor_nbd0.254
RMS Deviations
KeyRefinement Restraint Deviation
p_special_tor85.2
p_staggered_tor27.8
p_transverse_tor24.8
p_planar_tor8.9
p_mcangle_it2.626
p_scangle_it2.072
p_mcbond_it1.49
p_scbond_it1.178
p_chiral_restr0.78
p_multtor_nbd0.254
p_xyhbond_nbd0.208
p_singtor_nbd0.2
p_planar_d0.058
p_angle_d0.04
p_plane_restr0.023
p_bond_d0.011
p_angle_deg
p_hb_or_metal_coord
p_xhyhbond_nbd
p_orthonormal_tor
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3360
Nucleic Acid Atoms
Solvent Atoms28
Heterogen Atoms

Software

Software
Software NamePurpose
DENZOdata reduction
CCP4data reduction
AMoREphasing
CCP4refinement
CCP4data scaling