☰ Navigation Tabs
GLUCOSE OXIDASE FROM APERGILLUS NIGER
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1GAL PDB ENTRY 1GAL
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 5.6 pH 5.6
Crystal Properties Matthews coefficient Solvent content 2.2 43.2
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 67.54 α = 90 b = 67.54 β = 90 c = 215.38 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 290 IMAGE PLATE MARRESEARCH MIRRORS M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON MPG/DESY, HAMBURG BEAMLINE BW6 MPG/DESY, HAMBURG BW6
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 20 87.7 0.054 21.5 2.5 40401 20.24
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 1.99 78.7 0.122 6.9 1.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1GAL 1.9 20 40394 2026 87.7 0.19 0.19 0.1628 0.24 0.2086 RANDOM 24.22
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 34.6 p_special_tor 15 p_staggered_tor 14 p_planar_tor 3.9 p_scangle_it 2.116 p_mcangle_it 1.745 p_scbond_it 1.351 p_mcbond_it 1.134 p_multtor_nbd 0.25 p_singtor_nbd 0.178
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 34.6 p_special_tor 15 p_staggered_tor 14 p_planar_tor 3.9 p_scangle_it 2.116 p_mcangle_it 1.745 p_scbond_it 1.351 p_mcbond_it 1.134 p_multtor_nbd 0.25 p_singtor_nbd 0.178 p_xyhbond_nbd 0.136 p_chiral_restr 0.099 p_planar_d 0.024 p_angle_d 0.023 p_plane_restr 0.0184 p_bond_d 0.008 p_angle_deg p_hb_or_metal_coord p_xhyhbond_nbd p_orthonormal_tor
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4452 Nucleic Acid Atoms Solvent Atoms 309 Heterogen Atoms 156
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement