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REDUCED PLASTOCYANIN FROM SYNECHOCOCCUS SP.
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1IUZ OXIDIZED FORM
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 5 pH 5.0
Crystal Properties Matthews coefficient Solvent content 2.7 54.5
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 43.06 α = 90 b = 43.06 β = 90 c = 57.04 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 300 DIFFRACTOMETER WEISSENBERG 1997-12-26 M
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PHOTON FACTORY BEAMLINE BL-6A Photon Factory BL-6A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 30 96.2 0.061 3.6 9370
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.86 76.9 0.201
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT OXIDIZED FORM 1.8 10 8412 837 96 0.159 0.162 0.195 RANDOM 21.2
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation p_staggered_tor 17.8 p_transverse_tor 14.8 p_scangle_it 4.029 p_planar_tor 3.2 p_scbond_it 2.621 p_mcangle_it 2.398 p_mcbond_it 1.714 p_multtor_nbd 0.241 p_chiral_restr 0.198 p_singtor_nbd 0.178
RMS Deviations Key Refinement Restraint Deviation p_staggered_tor 17.8 p_transverse_tor 14.8 p_scangle_it 4.029 p_planar_tor 3.2 p_scbond_it 2.621 p_mcangle_it 2.398 p_mcbond_it 1.714 p_multtor_nbd 0.241 p_chiral_restr 0.198 p_singtor_nbd 0.178 p_planar_d 0.032 p_angle_d 0.026 p_bond_d 0.014 p_angle_deg p_hb_or_metal_coord p_plane_restr p_xhyhbond_nbd p_xyhbond_nbd p_orthonormal_tor p_special_tor
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 693 Nucleic Acid Atoms Solvent Atoms 83 Heterogen Atoms 1
Software Software Software Name Purpose AMoRE phasing REFMAC refinement DENZO data reduction SCALEPACK data scaling