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PEPTIDE DEFORMYLASE AS ZN2+ CONTAINING FORM IN COMPLEX WITH TRIPEPTIDE MET-ALA-SER
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1ICJ
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.4 SEE: D.GROCHE,A.BECKER,I.SCHLICHTING,W.KABSCH, S.SCHULTZ,A.F.V.WAGNER (1998)
BIOCHEM.BIOPHYS.RES.COMM. 246, 342, pH 7.4
Crystal Properties Matthews coefficient Solvent content 2.82 56
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 143.1 α = 90 b = 64.2 β = 123.3 c = 84.7 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 293 AREA DETECTOR SIEMENS-NICOLET X100 FRANCKS DUBBLE-MIRROR OPTICS 1998-04-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE ELLIOTT GX-18
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 20 99.2 0.08 11.98 3.6 32674 33.8
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.2 2.33 98.4 0.304 2 2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1ICJ 2.2 6 28683 2910 98.8 0.204 0.204 0.2091 0.261 RANDOM 33.1
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation x_dihedral_angle_d 26 x_scangle_it 3.6 x_improper_angle_d 2.28 x_scbond_it 2.27 x_mcangle_it 2.17 x_mcbond_it 1.32 x_angle_deg 1.3 x_bond_d 0.011 x_bond_d_na x_bond_d_prot
RMS Deviations Key Refinement Restraint Deviation x_dihedral_angle_d 26 x_scangle_it 3.6 x_improper_angle_d 2.28 x_scbond_it 2.27 x_mcangle_it 2.17 x_mcbond_it 1.32 x_angle_deg 1.3 x_bond_d 0.011 x_bond_d_na x_bond_d_prot x_angle_d x_angle_d_na x_angle_d_prot x_angle_deg_na x_angle_deg_prot x_dihedral_angle_d_na x_dihedral_angle_d_prot x_improper_angle_d_na x_improper_angle_d_prot
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4167 Nucleic Acid Atoms Solvent Atoms 160 Heterogen Atoms 18
Software Software Software Name Purpose X-PLOR model building X-PLOR refinement XDS data reduction XSCALE data scaling X-PLOR phasing