1BQR

REDUCED PSEUDOAZURIN


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 1PZAPDB ENTRY 1PZA

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
16pH 6.0
Crystal Properties
Matthews coefficientSolvent content
1.940

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 56.65α = 90
b = 61.67β = 90
c = 30.42γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray293IMAGE PLATERIGAKU RAXIS IIC1995-10-13M
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODERIGAKU RUH3R

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.63090.40.04410.54.413287116.97
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1.61.6670.80.1412.5

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 1PZA1.681244968090.50.1730.1840.211RANDOM18.2
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
RMS Deviations
KeyRefinement Restraint Deviation
p_transverse_tor22.4
p_staggered_tor16.8
p_special_tor10.6
p_planar_tor4.2
p_scangle_it3.469
p_scbond_it2.224
p_mcangle_it2.094
p_mcbond_it1.414
p_multtor_nbd0.244
p_singtor_nbd0.173
RMS Deviations
KeyRefinement Restraint Deviation
p_transverse_tor22.4
p_staggered_tor16.8
p_special_tor10.6
p_planar_tor4.2
p_scangle_it3.469
p_scbond_it2.224
p_mcangle_it2.094
p_mcbond_it1.414
p_multtor_nbd0.244
p_singtor_nbd0.173
p_xyhbond_nbd0.14
p_chiral_restr0.138
p_planar_d0.03
p_angle_d0.026
p_plane_restr0.0236
p_bond_d0.01
p_angle_deg
p_hb_or_metal_coord
p_xhyhbond_nbd
p_orthonormal_tor
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms913
Nucleic Acid Atoms
Solvent Atoms96
Heterogen Atoms1

Software

Software
Software NamePurpose
MERLOTphasing
REFMACrefinement
DENZOdata reduction
SCALEPACKdata scaling