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MONOCLONAL ANTIBODY FRAGMENT FV4155 FROM E. COLI
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1NBV PDB ENTRY 1NBV
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.5 PROTEIN WAS CRYSTALLIZED FROM 18% (W/V) PEG 8000, 200MM ZN ACETATE AND 100MM NA CACODYLATE, PH 7.5
Crystal Properties Matthews coefficient Solvent content 2.37 48.1
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 89.9 α = 90 b = 89.9 β = 90 c = 59.9 γ = 90
Symmetry Space Group P 4 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS IIC MSC DOUBLE FOCUSING MIRRORS 1996-02-18 M
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RUH2R
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 20 99.8 0.074 9.53 8.8 14834 3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.1 2.17 99.5 0.243 3.1 8.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1NBV 2.1 10 14473 13749 724 98.42 0.187 0.182 0.271 0.2521 RANDOM 21.89
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 22.008 p_staggered_tor 14.647 p_scangle_it 7.872 p_scbond_it 5.789 p_planar_tor 3.879 p_mcangle_it 2.435 p_mcbond_it 1.562 p_multtor_nbd 0.193 p_xyhbond_nbd 0.175 p_singtor_nbd 0.174
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 22.008 p_staggered_tor 14.647 p_scangle_it 7.872 p_scbond_it 5.789 p_planar_tor 3.879 p_mcangle_it 2.435 p_mcbond_it 1.562 p_multtor_nbd 0.193 p_xyhbond_nbd 0.175 p_singtor_nbd 0.174 p_chiral_restr 0.109 p_planar_d 0.039 p_angle_d 0.037 p_plane_restr 0.012 p_bond_d 0.011 p_angle_deg p_hb_or_metal_coord p_xhyhbond_nbd p_orthonormal_tor p_special_tor
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1794 Nucleic Acid Atoms Solvent Atoms 182 Heterogen Atoms 36
Software Software Software Name Purpose MOSFLM data reduction ROTAVATA data reduction AMoRE phasing PROLSQ refinement CCP4 data scaling