Starting Model(s)
| Initial Refinement Model(s) |
|---|
| Type | Source | Accession Code | Details |
|---|
|
experimental model | PDB | 1B80 | |
Crystallization
| Crystalization Experiments |
|---|
| ID | Method | pH | Temperature | Details |
|---|
| 1 | | 4 | | pH 4.0 |
| Crystal Properties |
|---|
| Matthews coefficient | Solvent content |
|---|
| 2.6 | 53 |
Crystal Data
| Unit Cell |
|---|
| Length ( Å ) | Angle ( ˚ ) |
|---|
| a = 73.4 | α = 90 |
| b = 94.4 | β = 90 |
| c = 230.99 | γ = 90 |
| Symmetry |
|---|
| Space Group | C 2 2 21 |
|---|
Diffraction
| Diffraction Experiment |
|---|
| ID # | Crystal ID | Scattering Type | Data Collection Temperature | Detector | Detector Type | Details | Collection Date | Monochromator | Protocol |
|---|
| 1 | 1 | x-ray | 293 | IMAGE PLATE | MARRESEARCH | | 1998-11-15 | M | SINGLE WAVELENGTH |
| Radiation Source |
|---|
| ID # | Source | Type | Wavelength List | Synchrotron Site | Beamline |
|---|
| 1 | SYNCHROTRON | ESRF BEAMLINE BM1A | | ESRF | BM1A |
Data Collection
| Overall |
|---|
| ID # | Resolution (High) | Resolution (Low) | Percent Possible (Observed) | R Merge I (Observed) | Net I Over Average Sigma (I) | Redundancy | Number Reflections (All) | Number Reflections (Observed) | Observed Criterion Sigma (F) | Observed Criterion Sigma (I) | B (Isotropic) From Wilson Plot |
|---|
| 1 | 1.85 | 12 | 91.4 | 0.056 | 14.7 | 6.3 | | 62663 | | | 15.3 |
| Highest Resolution Shell |
|---|
| ID # | Resolution (High) | Resolution (Low) | Percent Possible (All) | Percent Possible (Observed) | R Merge I (Observed) | Mean I Over Sigma (Observed) | Redundancy | Number Unique Reflections (All) |
|---|
| 1.85 | 1.88 | 89.6 | | 0.245 | 4.4 | | |
Refinement
| Statistics |
|---|
| Diffraction ID | Structure Solution Method | Cross Validation method | Starting model | Resolution (High) | Resolution (Low) | Number Reflections (All) | Number Reflections (Observed) | Number Reflections (R-Free) | Percent Reflections (Observed) | R-Work (Depositor) | R-Free (Depositor) | R-Free Selection Details | Mean Isotropic B |
|---|
| X-RAY DIFFRACTION | MOLECULAR REPLACEMENT | THROUGHOUT | 1B80 | 1.85 | 12 | 62658 | 62658 | | 91.1 | 0.142 | 0.181 | RANDOM | 21.6 |
| Temperature Factor Modeling |
|---|
| Anisotropic B[1][1] | Anisotropic B[1][2] | Anisotropic B[1][3] | Anisotropic B[2][2] | Anisotropic B[2][3] | Anisotropic B[3][3] |
|---|
| | | | | |
| RMS Deviations |
|---|
| Key | Refinement Restraint Deviation |
|---|
| p_transverse_tor | 33.9 |
| p_staggered_tor | 12.9 |
| p_planar_tor | 3.8 |
| p_scangle_it | 3.49 |
| p_mcangle_it | 2.27 |
| p_scbond_it | 2.25 |
| p_mcbond_it | 1.61 |
| p_multtor_nbd | 0.26 |
| p_singtor_nbd | 0.17 |
| p_chiral_restr | 0.154 |
| RMS Deviations |
|---|
| Key | Refinement Restraint Deviation |
|---|
| p_transverse_tor | 33.9 |
| p_staggered_tor | 12.9 |
| p_planar_tor | 3.8 |
| p_scangle_it | 3.49 |
| p_mcangle_it | 2.27 |
| p_scbond_it | 2.25 |
| p_mcbond_it | 1.61 |
| p_multtor_nbd | 0.26 |
| p_singtor_nbd | 0.17 |
| p_chiral_restr | 0.154 |
| p_xyhbond_nbd | 0.138 |
| p_planar_d | 0.036 |
| p_angle_d | 0.03 |
| p_plane_restr | 0.023 |
| p_bond_d | 0.015 |
| p_angle_deg | |
| p_hb_or_metal_coord | |
| p_xhyhbond_nbd | |
| p_orthonormal_tor | |
| p_special_tor | |
| Non-Hydrogen Atoms Used in Refinement |
|---|
| Non-Hydrogen Atoms | Number |
|---|
| Protein Atoms | 5210 |
| Nucleic Acid Atoms | |
| Solvent Atoms | 636 |
| Heterogen Atoms | 92 |
Software
| Software |
|---|
| Software Name | Purpose |
|---|
| DENZO | data reduction |
| SCALEPACK | data scaling |
| REFMAC | refinement |
