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STRUCTURE OF THE PHOSPHATIDYLETHANOLAMINE-BINDING PROTEIN FROM BOVINE BRAIN
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1A44 PDB ENTRY 1A44
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 4.3 25-27% PEG8000, 100 MM PHOSPHORYLETHANOLAMINE, pH 4.3
Crystal Properties Matthews coefficient Solvent content 2.18 44
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 44.2 α = 90 b = 77.16 β = 90 c = 107.48 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MARRESEARCH 1998-05-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON LURE BEAMLINE DW32 LURE DW32
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.25 29 90.8 0.057 4.9 12.4 3.9 16450 1 24.7
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.25 2.41 88.8 0.122 10.6 7.1 3.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1A44 2.25 12.5 16289 16289 1625 90 0.208 0.279 RANDOM 24.37
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 25.8 p_staggered_tor 17 p_special_tor 15 p_planar_tor 5.2 p_scangle_it 3.831 p_mcangle_it 2.799 p_scbond_it 2.493 p_mcbond_it 1.855 p_multtor_nbd 0.258 p_singtor_nbd 0.185
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 25.8 p_staggered_tor 17 p_special_tor 15 p_planar_tor 5.2 p_scangle_it 3.831 p_mcangle_it 2.799 p_scbond_it 2.493 p_mcbond_it 1.855 p_multtor_nbd 0.258 p_singtor_nbd 0.185 p_chiral_restr 0.14 p_angle_d 0.042 p_planar_d 0.042 p_plane_restr 0.0338 p_bond_d 0.014 p_angle_deg p_hb_or_metal_coord p_xhyhbond_nbd p_xyhbond_nbd p_orthonormal_tor
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2949 Nucleic Acid Atoms Solvent Atoms 164 Heterogen Atoms 32
Software Software Software Name Purpose AMoRE phasing REFMAC refinement MOSFLM data reduction CCP4 data scaling