1AKC

Structural basis for the catalytic activity of aspartate aminotransferase K258H lacking its pyridoxal-5'-phosphate-binding lysine residue


X-RAY DIFFRACTION

Crystallization

Crystal Properties
Matthews coefficientSolvent content
2.2645.61

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 69.8α = 90
b = 91.3β = 90
c = 127.8γ = 90
Symmetry
Space GroupC 2 2 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray

Refinement

Statistics
Diffraction IDStructure Solution MethodResolution (High)Resolution (Low)Cut-off Sigma (F)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTION2.3101164340.172
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
RMS Deviations
KeyRefinement Restraint Deviation
p_orthonormal_tor23.8
p_staggered_tor20.8
p_scangle_it12
p_scbond_it9.5
p_mcangle_it8.9
p_mcbond_it7.4
p_planar_tor1.9
p_multtor_nbd0.26
p_xhyhbond_nbd0.21
p_singtor_nbd0.19
RMS Deviations
KeyRefinement Restraint Deviation
p_orthonormal_tor23.8
p_staggered_tor20.8
p_scangle_it12
p_scbond_it9.5
p_mcangle_it8.9
p_mcbond_it7.4
p_planar_tor1.9
p_multtor_nbd0.26
p_xhyhbond_nbd0.21
p_singtor_nbd0.19
p_chiral_restr0.15
p_planar_d0.047
p_angle_d0.042
p_bond_d0.011
p_plane_restr0.01
p_angle_deg
p_hb_or_metal_coord
p_xyhbond_nbd
p_transverse_tor
p_special_tor
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3162
Nucleic Acid Atoms
Solvent Atoms311
Heterogen Atoms25

Software

Software
Software NamePurpose
PROLSQrefinement