☰ Navigation Tabs
CRYSTAL STRUCTURE OF THE HISTONE HMFB FROM METHANOTHERMUS FERVIDUS
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model Other PARTIALLY REFINED ORTHORHOMBIC HMFA
Crystallization Crystal Properties Matthews coefficient Solvent content 2.5 51
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 31.3 α = 90 b = 61.58 β = 90 c = 39.65 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 293 IMAGE PLATE MAR scanner 300 mm plate SUPPER NI-COATED MIRROR SYSTEM 1995-02-26 M
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RUH2R
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 39.1 95.9 0.053 0.053 8.3 4.1 6152 22.87
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 1.97 97.2 0.196 0.196 3.7 3.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT AFTER RIGID BODY REFINEMENT PARTIALLY REFINED ORTHORHOMBIC HMFA 1.55 18 10797 520 97.4 0.2 0.198 0.1776 0.248 0.1899 RANDOM 25.34
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.398 1.398 -2.69
RMS Deviations Key Refinement Restraint Deviation p_staggered_tor 17.7 p_scangle_it 5.241 p_transverse_tor 4.5 p_planar_tor 3.9 p_scbond_it 3.426 p_mcangle_it 2.676 p_mcbond_it 1.932 p_multtor_nbd 0.3 p_xhyhbond_nbd 0.3 p_xyhbond_nbd 0.3
RMS Deviations Key Refinement Restraint Deviation p_staggered_tor 17.7 p_scangle_it 5.241 p_transverse_tor 4.5 p_planar_tor 3.9 p_scbond_it 3.426 p_mcangle_it 2.676 p_mcbond_it 1.932 p_multtor_nbd 0.3 p_xhyhbond_nbd 0.3 p_xyhbond_nbd 0.3 p_singtor_nbd 0.178 p_chiral_restr 0.161 p_planar_d 0.047 p_angle_d 0.039 p_plane_restr 0.0242 p_bond_d 0.022 p_angle_deg p_hb_or_metal_coord p_orthonormal_tor p_special_tor
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 527 Nucleic Acid Atoms Solvent Atoms 46 Heterogen Atoms 2
Software Software Software Name Purpose AMoRE phasing REFMAC refinement DENZO data reduction CCP4 data scaling SCALA data scaling