1A6U

B1-8 FV FRAGMENT


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 1MFAPDB ENTRY 1MFA

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1CRYSTALS WERE GROWN USING AMMONIUM SULFATE AS PRECIPITANT.
Crystal Properties
Matthews coefficientSolvent content
2.3324.4

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 72.03α = 90
b = 85.78β = 90
c = 37.42γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray269IMAGE PLATEMARRESEARCH1995-08-23M
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
1213.792.30.0544.310519623.8
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
22.0561.20.1773.3

Refinement

Statistics
Diffraction IDStructure Solution MethodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTPDB ENTRY 1MFA2.16122380.19230.1
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
RMS Deviations
KeyRefinement Restraint Deviation
p_staggered_tor19.5
p_scangle_it3.4
p_planar_tor2.7
p_mcangle_it2.6
p_scbond_it2.4
p_mcbond_it1.6
p_chiral_restr0.136
p_angle_d0.058
p_bond_d0.02
p_plane_restr0.015
RMS Deviations
KeyRefinement Restraint Deviation
p_staggered_tor19.5
p_scangle_it3.4
p_planar_tor2.7
p_mcangle_it2.6
p_scbond_it2.4
p_mcbond_it1.6
p_chiral_restr0.136
p_angle_d0.058
p_bond_d0.02
p_plane_restr0.015
p_angle_deg
p_planar_d
p_hb_or_metal_coord
p_singtor_nbd
p_multtor_nbd
p_xhyhbond_nbd
p_xyhbond_nbd
p_orthonormal_tor
p_transverse_tor
p_special_tor
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1736
Nucleic Acid Atoms
Solvent Atoms156
Heterogen Atoms

Software

Software
Software NamePurpose
MOSFLMdata reduction
AGROVATA/ROTAVATAdata reduction
ALMN/CCP4model building
PROLSQrefinement
Agrovatadata scaling
ROTAVATAdata scaling
CCP4phasing