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G12V MUTANT OF HUMAN PLACENTAL CDC42 GTPASE IN THE GDP FORM
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4Q21 4Q21 WITH ALL NON-CONSERVED RESIDUES MUTATED TO ALANINE
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 4.6 pH 4.60
Crystal Properties Matthews coefficient Solvent content 2.9 51
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 98.65 α = 90 b = 98.65 β = 90 c = 104.16 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MARRESEARCH 1997-06-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE X31 EMBL/DESY, HAMBURG X31
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 30 99.3 0.049 15.6 4.8 17611 2 46.7
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.5 2.6 99.9 0.46 3.3 4.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4Q21 WITH ALL NON-CONSERVED RESIDUES MUTATED TO ALANINE 2.5 30 2 17611 1738 95.9 0.228 0.228 0.2281 0.28 0.2814 RANDOM 57.5
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation x_dihedral_angle_d 27.5 x_scangle_it 6.98 x_mcangle_it 4.84 x_scbond_it 4.74 x_mcbond_it 3.04 x_angle_deg 1.2 x_improper_angle_d 0.67 x_bond_d 0.007 x_bond_d_na x_bond_d_prot
RMS Deviations Key Refinement Restraint Deviation x_dihedral_angle_d 27.5 x_scangle_it 6.98 x_mcangle_it 4.84 x_scbond_it 4.74 x_mcbond_it 3.04 x_angle_deg 1.2 x_improper_angle_d 0.67 x_bond_d 0.007 x_bond_d_na x_bond_d_prot x_angle_d x_angle_d_na x_angle_d_prot x_angle_deg_na x_angle_deg_prot x_dihedral_angle_d_na x_dihedral_angle_d_prot x_improper_angle_d_na x_improper_angle_d_prot
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3087 Nucleic Acid Atoms Solvent Atoms 54 Heterogen Atoms 29
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling X-PLOR model building X-PLOR refinement X-PLOR phasing