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Crystal Structure of FtsZ with Z108545814
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2Q1X initial MR model
Crystallization Crystalization Experiments ID Method pH Temperature Details ftsz-485 VAPOR DIFFUSION, SITTING DROP 5 294 0.1 M ammonium sulfate, 15.6% (w/v) PEG 3350, 0.1 M Bis-Tris pH 5.0.
Crystal Properties Matthews coefficient Solvent content 2.6 52.76
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 88.445 α = 90 b = 88.445 β = 90 c = 178.908 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol ftsz-485 ftsz-485 x-ray 100 PIXEL DECTRIS EIGER X 9M KB 2025-04-07 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline ftsz-485 SYNCHROTRON NSLS-II BEAMLINE 17-ID-1 0.919764 NSLS-II 17-ID-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot ftsz-485 1.759 42.93 100 0.188 0.195 0.053 0.998 9.2 13.4 78361
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) ftsz-485 1.759 1.789 100 3.962 4.115 1.11 0.351 13.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.759 42.967 78286 3986 99.898 0.182 0.1806 0.1896 0.2084 0.2177 29.017
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.004 -0.002 -0.004 0.014
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 18.414 r_dihedral_angle_3_deg 14.408 r_dihedral_angle_6_deg 14.187 r_lrange_it 8.366 r_lrange_other 8.331 r_scangle_it 7.371 r_scangle_other 7.37 r_dihedral_angle_1_deg 6.534 r_scbond_it 4.847 r_scbond_other 4.846
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 18.414 r_dihedral_angle_3_deg 14.408 r_dihedral_angle_6_deg 14.187 r_lrange_it 8.366 r_lrange_other 8.331 r_scangle_it 7.371 r_scangle_other 7.37 r_dihedral_angle_1_deg 6.534 r_scbond_it 4.847 r_scbond_other 4.846 r_mcangle_it 3.828 r_mcangle_other 3.828 r_mcbond_it 2.706 r_mcbond_other 2.703 r_angle_refined_deg 1.809 r_angle_other_deg 0.633 r_symmetry_nbd_other 0.496 r_symmetry_xyhbond_nbd_other 0.331 r_nbd_refined 0.22 r_nbd_other 0.198 r_xyhbond_nbd_refined 0.179 r_symmetry_xyhbond_nbd_refined 0.176 r_nbtor_refined 0.168 r_symmetry_nbtor_other 0.147 r_symmetry_nbd_refined 0.139 r_chiral_restr 0.086 r_bond_refined_d 0.009 r_gen_planes_refined 0.008 r_bond_other_d 0.005 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4230 Nucleic Acid Atoms Solvent Atoms 312 Heterogen Atoms 39
Software Software Software Name Purpose REFMAC refinement autoPROC data reduction Aimless data scaling XDS data reduction DIMPLE phasing PHASER phasing Coot model building gemmi data extraction