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Crystal Structure of FtsZ with Z104492884
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2Q1X initial MR model
Crystallization Crystalization Experiments ID Method pH Temperature Details ftsz-321 VAPOR DIFFUSION, SITTING DROP 5 294 0.1 M ammonium sulfate, 15.6% (w/v) PEG 3350, 0.1 M Bis-Tris pH 5.0.
Crystal Properties Matthews coefficient Solvent content 2.61 52.9
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 88.679 α = 90 b = 88.679 β = 90 c = 178.502 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol ftsz-321 ftsz-321 x-ray 100 PIXEL DECTRIS EIGER X 9M KB 2025-04-06 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline ftsz-321 SYNCHROTRON NSLS-II BEAMLINE 17-ID-1 0.919764 NSLS-II 17-ID-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot ftsz-321 2.182 44.34 100 0.416 0.433 0.118 0.992 6.3 13.5 41234
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) ftsz-321 2.182 2.22 100 3.611 3.752 1.017 0.343 13.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.182 44.379 41176 2133 99.833 0.182 0.1792 0.185 0.2241 0.2264 34.727
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.022 0.011 0.022 -0.071
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 15.101 r_dihedral_angle_6_deg 14.268 r_lrange_it 9.262 r_lrange_other 9.16 r_dihedral_angle_2_deg 8.632 r_scangle_it 7.355 r_scangle_other 7.354 r_dihedral_angle_1_deg 6.44 r_mcangle_other 4.82 r_mcangle_it 4.819
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 15.101 r_dihedral_angle_6_deg 14.268 r_lrange_it 9.262 r_lrange_other 9.16 r_dihedral_angle_2_deg 8.632 r_scangle_it 7.355 r_scangle_other 7.354 r_dihedral_angle_1_deg 6.44 r_mcangle_other 4.82 r_mcangle_it 4.819 r_scbond_it 4.613 r_scbond_other 4.612 r_mcbond_other 2.983 r_mcbond_it 2.961 r_angle_refined_deg 1.696 r_angle_other_deg 0.569 r_symmetry_xyhbond_nbd_refined 0.338 r_symmetry_nbd_other 0.262 r_dihedral_angle_other_2_deg 0.251 r_nbd_refined 0.216 r_xyhbond_nbd_refined 0.208 r_nbd_other 0.2 r_xyhbond_nbd_other 0.198 r_nbtor_refined 0.172 r_symmetry_nbd_refined 0.166 r_symmetry_nbtor_other 0.096 r_chiral_restr 0.077 r_symmetry_xyhbond_nbd_other 0.064 r_bond_refined_d 0.007 r_gen_planes_refined 0.006 r_bond_other_d 0.003 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4230 Nucleic Acid Atoms Solvent Atoms 307 Heterogen Atoms 39
Software Software Software Name Purpose REFMAC refinement autoPROC data reduction Aimless data scaling XDS data reduction DIMPLE phasing PHASER phasing Coot model building gemmi data extraction