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Crystal Structure of FtsZ with Z26781964
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2Q1X initial MR model
Crystallization Crystalization Experiments ID Method pH Temperature Details ftsz-308 VAPOR DIFFUSION, SITTING DROP 5 294 0.1 M ammonium sulfate, 15.6% (w/v) PEG 3350, 0.1 M Bis-Tris pH 5.0.
Crystal Properties Matthews coefficient Solvent content 2.55 51.72
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 88.1 α = 90 b = 88.1 β = 90 c = 176.445 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol ftsz-308 ftsz-308 x-ray 100 PIXEL DECTRIS EIGER X 9M KB 2025-04-06 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline ftsz-308 SYNCHROTRON NSLS-II BEAMLINE 17-ID-1 0.919764 NSLS-II 17-ID-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot ftsz-308 2.205 44.05 100 0.259 0.269 0.073 0.996 8.6 13.5 38935
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) ftsz-308 2.205 2.243 100 2.507 2.605 0.705 0.313 13.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.205 44.089 38930 2027 99.949 0.171 0.1686 0.1761 0.2244 0.2243 39.47
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.012 -0.006 -0.012 0.038
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 14.93 r_dihedral_angle_6_deg 14.204 r_dihedral_angle_2_deg 13.954 r_lrange_it 10.027 r_lrange_other 9.869 r_scangle_it 7.982 r_scangle_other 7.981 r_dihedral_angle_1_deg 6.19 r_mcangle_other 4.993 r_mcangle_it 4.99
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 14.93 r_dihedral_angle_6_deg 14.204 r_dihedral_angle_2_deg 13.954 r_lrange_it 10.027 r_lrange_other 9.869 r_scangle_it 7.982 r_scangle_other 7.981 r_dihedral_angle_1_deg 6.19 r_mcangle_other 4.993 r_mcangle_it 4.99 r_scbond_it 4.864 r_scbond_other 4.863 r_mcbond_other 3.177 r_mcbond_it 3.143 r_angle_refined_deg 1.611 r_angle_other_deg 0.547 r_symmetry_xyhbond_nbd_refined 0.29 r_xyhbond_nbd_refined 0.23 r_nbd_refined 0.214 r_symmetry_nbd_other 0.195 r_symmetry_nbd_refined 0.19 r_nbd_other 0.184 r_nbtor_refined 0.17 r_symmetry_xyhbond_nbd_other 0.094 r_symmetry_nbtor_other 0.086 r_chiral_restr 0.079 r_bond_refined_d 0.007 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4230 Nucleic Acid Atoms Solvent Atoms 320 Heterogen Atoms 59
Software Software Software Name Purpose REFMAC refinement autoPROC data reduction Aimless data scaling XDS data reduction DIMPLE phasing PHASER phasing Coot model building gemmi data extraction