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Crystal Structure of FtsZ with F3222-5456
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2Q1X initial MR model
Crystallization Crystalization Experiments ID Method pH Temperature Details ftsz-294 VAPOR DIFFUSION, SITTING DROP 5 294 0.1 M ammonium sulfate, 15.6% (w/v) PEG 3350, 0.1 M Bis-Tris pH 5.0.
Crystal Properties Matthews coefficient Solvent content 2.58 52.35
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 88.356 α = 90 b = 88.356 β = 90 c = 177.715 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol ftsz-294 ftsz-294 x-ray 100 PIXEL DECTRIS EIGER X 9M KB 2025-04-07 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline ftsz-294 SYNCHROTRON NSLS-II BEAMLINE 17-ID-1 0.919764 NSLS-II 17-ID-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot ftsz-294 1.979 44.178 100 0.239 0.248 0.067 0.997 9 13.3 54575
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) ftsz-294 1.979 2.013 100 2.544 2.645 0.716 0.388 13.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.979 44.217 54559 2742 99.932 0.18 0.1788 0.1864 0.2112 0.2145 32.9
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.002 0.001 0.002 -0.008
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 15.018 r_dihedral_angle_6_deg 14.211 r_lrange_it 8.777 r_lrange_other 8.722 r_dihedral_angle_2_deg 7.625 r_scangle_it 7.248 r_scangle_other 7.247 r_dihedral_angle_1_deg 6.47 r_scbond_it 4.666 r_scbond_other 4.665
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 15.018 r_dihedral_angle_6_deg 14.211 r_lrange_it 8.777 r_lrange_other 8.722 r_dihedral_angle_2_deg 7.625 r_scangle_it 7.248 r_scangle_other 7.247 r_dihedral_angle_1_deg 6.47 r_scbond_it 4.666 r_scbond_other 4.665 r_mcangle_it 4.313 r_mcangle_other 4.312 r_mcbond_it 2.898 r_mcbond_other 2.895 r_angle_refined_deg 1.707 r_angle_other_deg 0.637 r_symmetry_nbd_other 0.55 r_nbd_refined 0.222 r_nbd_other 0.207 r_symmetry_xyhbond_nbd_refined 0.204 r_xyhbond_nbd_refined 0.193 r_symmetry_nbd_refined 0.18 r_nbtor_refined 0.168 r_symmetry_nbtor_other 0.12 r_chiral_restr 0.08 r_symmetry_xyhbond_nbd_other 0.049 r_bond_refined_d 0.008 r_gen_planes_refined 0.007 r_bond_other_d 0.005 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4230 Nucleic Acid Atoms Solvent Atoms 309 Heterogen Atoms 23
Software Software Software Name Purpose REFMAC refinement autoPROC data reduction Aimless data scaling XDS data reduction DIMPLE phasing PHASER phasing Coot model building gemmi data extraction