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Crystal Structure of FtsZ with F1902-0062
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2Q1X initial MR model
Crystallization Crystalization Experiments ID Method pH Temperature Details ftsz-131 VAPOR DIFFUSION, SITTING DROP 5 294 0.1 M ammonium sulfate, 15.6% (w/v) PEG 3350, 0.1 M Bis-Tris pH 5.0.
Crystal Properties Matthews coefficient Solvent content 2.62 52.97
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 88.688 α = 90 b = 88.688 β = 90 c = 178.708 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol ftsz-131 ftsz-131 x-ray 100 PIXEL DECTRIS EIGER X 9M KB 2025-04-06 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline ftsz-131 SYNCHROTRON NSLS-II BEAMLINE 17-ID-1 0.919764 NSLS-II 17-ID-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot ftsz-131 1.928 44.344 100 0.198 0.206 0.056 0.998 9.9 13.4 59771
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) ftsz-131 1.928 1.961 100 2.499 2.598 0.708 0.373 13.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.928 44.383 59764 3029 99.951 0.182 0.1806 0.1882 0.2127 0.2186 34.061
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.001 -0.001 -0.001 0.004
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 15.29 r_dihedral_angle_6_deg 14.399 r_dihedral_angle_other_2_deg 11.621 r_lrange_it 8.748 r_lrange_other 8.725 r_dihedral_angle_2_deg 8.482 r_scangle_it 7.485 r_scangle_other 7.484 r_dihedral_angle_1_deg 6.832 r_scbond_it 4.877
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 15.29 r_dihedral_angle_6_deg 14.399 r_dihedral_angle_other_2_deg 11.621 r_lrange_it 8.748 r_lrange_other 8.725 r_dihedral_angle_2_deg 8.482 r_scangle_it 7.485 r_scangle_other 7.484 r_dihedral_angle_1_deg 6.832 r_scbond_it 4.877 r_scbond_other 4.866 r_mcangle_it 4.324 r_mcangle_other 4.324 r_mcbond_it 2.959 r_mcbond_other 2.958 r_angle_refined_deg 1.737 r_angle_other_deg 0.647 r_symmetry_nbd_other 0.494 r_symmetry_xyhbond_nbd_other 0.382 r_symmetry_xyhbond_nbd_refined 0.26 r_nbd_refined 0.222 r_nbd_other 0.202 r_symmetry_nbd_refined 0.201 r_xyhbond_nbd_refined 0.187 r_nbtor_refined 0.166 r_symmetry_nbtor_other 0.119 r_chiral_restr 0.082 r_bond_refined_d 0.008 r_gen_planes_refined 0.007 r_bond_other_d 0.004 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4230 Nucleic Acid Atoms Solvent Atoms 307 Heterogen Atoms 15
Software Software Software Name Purpose REFMAC refinement autoPROC data reduction Aimless data scaling XDS data reduction DIMPLE phasing PHASER phasing Coot model building gemmi data extraction