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 10SV | pdb_000010sv

Solution structure of the surface domain of the Borrelia burgdorferi outer surface lipoprotein BBA36


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
13D 1H-13C NOESY aliphatic1 mM [U-98% 13C; U-98% 15N] BBA36, 100 mM sodium chloride, 20 mM TRIS, 1 mM EDTA93% H2O/7% D2O121 mM71 atm298Bruker Bruker Ascend 700
23D 1H-15N NOESY1 mM [U-98% 13C; U-98% 15N] BBA36, 100 mM sodium chloride, 20 mM TRIS, 1 mM EDTA93% H2O/7% D2O121 mM71 atm298Bruker Bruker Ascend 700
33D C(CO)NH1 mM [U-98% 13C; U-98% 15N] BBA36, 100 mM sodium chloride, 20 mM TRIS, 1 mM EDTA93% H2O/7% D2O121 mM71 atm298Bruker Bruker Ascend 700
43D HNCACB1 mM [U-98% 13C; U-98% 15N] BBA36, 100 mM sodium chloride, 20 mM TRIS, 1 mM EDTA93% H2O/7% D2O121 mM71 atm298Bruker Bruker Ascend 700
53D CBCA(CO)NH1 mM [U-98% 13C; U-98% 15N] BBA36, 100 mM sodium chloride, 20 mM TRIS, 1 mM EDTA93% H2O/7% D2O121 mM71 atm298Bruker Bruker Ascend 700
63D HNCA1 mM [U-98% 13C; U-98% 15N] BBA36, 100 mM sodium chloride, 20 mM TRIS, 1 mM EDTA93% H2O/7% D2O121 mM71 atm298Bruker Bruker Ascend 700
123D HN(CO)CA1 mM [U-98% 13C; U-98% 15N] BBA36, 100 mM sodium chloride, 20 mM TRIS, 1 mM EDTA93% H2O/7% D2O121 mM71 atm298Bruker Bruker Ascend 700
113D HNCO1 mM [U-98% 13C; U-98% 15N] BBA36, 100 mM sodium chloride, 20 mM TRIS, 1 mM EDTA93% H2O/7% D2O121 mM71 atm298Bruker Bruker Ascend 700
103D HCACO1 mM [U-98% 13C; U-98% 15N] BBA36, 100 mM sodium chloride, 20 mM TRIS, 1 mM EDTA93% H2O/7% D2O121 mM71 atm298Bruker Bruker Ascend 700
93D 1H-15N TOCSY1 mM [U-98% 13C; U-98% 15N] BBA36, 100 mM sodium chloride, 20 mM TRIS, 1 mM EDTA93% H2O/7% D2O121 mM71 atm298Bruker Bruker Ascend 700
83D HBHA(CO)NH1 mM [U-98% 13C; U-98% 15N] BBA36, 100 mM sodium chloride, 20 mM TRIS, 1 mM EDTA93% H2O/7% D2O121 mM71 atm298Bruker Bruker Ascend 700
73D HCCH-TOCSY1 mM [U-98% 13C; U-98% 15N] BBA36, 100 mM sodium chloride, 20 mM TRIS, 1 mM EDTA93% H2O/7% D2O121 mM71 atm298Bruker Bruker Ascend 700
142D 1H-13C HSQC aliphatic1 mM [U-98% 13C; U-98% 15N] BBA36, 100 mM sodium chloride, 20 mM TRIS, 1 mM EDTA93% H2O/7% D2O121 mM71 atm298Bruker Bruker Ascend 700
132D 1H-13C HSQC aromatic1 mM [U-98% 13C; U-98% 15N] BBA36, 100 mM sodium chloride, 20 mM TRIS, 1 mM EDTA93% H2O/7% D2O121 mM71 atm298Bruker Bruker Ascend 700
152D 1H-15N HSQC1 mM [U-98% 13C; U-98% 15N] BBA36, 100 mM sodium chloride, 20 mM TRIS, 1 mM EDTA93% H2O/7% D2O121 mM71 atm298Bruker Bruker Ascend 700
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerBruker Ascend700
NMR Refinement
MethodDetailsSoftware
torsion angle dynamicsSTRUCTURE CALCULATIONS WERE PERFORMED ITERATIVELY USING CYANA (AUTOMATED NOESY ASSIGNMENTS). A TOTAL OF 20 STRUCTURES OUT OF 100 WITH LOWEST TARGET FUNCTION FROM THE FINAL CYANA CALCULATION WERE TAKEN AND REFINED BY RESTRAINED MOLECULAR DYNAMICS/ENERGY MINIMIZATION IN EXPLICIT WATER (CNS) AFTER ADDING 10% TO THE UPPER BOUNDARY LIMIT OF THE DISTANCE RESTRAINTS AND THE VDW FOR THE LOWER LIMIT. HYDROGEN BOND RESTRAINTS WERE INTRODUCED ON THE BASIS OF SLOWLY EXCHANGING AMIDE RESONANCES OBSERVED IN THE DEUTERIUM EXCHANGE EXPERIMENT AND PROXIMITY IN EARLY STRUCTURE CALCULATIONS. STERO-ASSIGNMENTS WERE MADE FOR the methyl groups of 17/22 LEU/VAL residues on the BASIS OF 1H-13C HSQC SPECTRUM FOR THE 10%-CARBON-13 LABELLED SAMPLE.CYANA
NMR Ensemble Information
Conformer Selection Criteriatarget function
Conformers Calculated Total Number100
Conformers Submitted Total Number20
Representative Model1 (target function)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1data analysisPokyManthey, Tonelli, Clos II, Rahimi, Markley and Lee
2refinementCNSBrunger, Adams, Clore, Gros, Nilges and Read
3structure calculationCYANA2.1Guntert, Mumenthaler and Wuthrich
4chemical shift assignmentPokyManthey, Tonelli, Clos II, Rahimi, Markley and Lee
5processingTopSpinBruker Biospin