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FGFR2 mutant D650V with compound 6
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5UGL
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 5.6 293 22% PEG 4,000, 200 mM Ammonium Sulfate, 100 mM Sodium Citrate pH 5.6
Crystal Properties Matthews coefficient Solvent content 2.65 53.57
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 96.743 α = 90 b = 96.743 β = 90 c = 145.622 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER2 X 16M 2025-09-16 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I03 0.97625 Diamond I03
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.98 54.966 100 0.188 0.999 9.6 20.6 55606
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.98 2.01 99.6 0.329 19.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 1.98 54.966 52790 2768 99.92 0.20617 0.20376 0.2108 0.25144 0.2543 RANDOM 51.256
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.69 0.34 0.69 -2.23
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 18.581 r_dihedral_angle_3_deg 17.486 r_long_range_B_other 9.657 r_long_range_B_refined 9.651 r_scangle_other 8.309 r_dihedral_angle_1_deg 7.427 r_scbond_it 6.074 r_scbond_other 5.891 r_mcangle_it 5.573 r_mcangle_other 5.573
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 18.581 r_dihedral_angle_3_deg 17.486 r_long_range_B_other 9.657 r_long_range_B_refined 9.651 r_scangle_other 8.309 r_dihedral_angle_1_deg 7.427 r_scbond_it 6.074 r_scbond_other 5.891 r_mcangle_it 5.573 r_mcangle_other 5.573 r_mcbond_it 3.993 r_mcbond_other 3.972 r_angle_refined_deg 2.7 r_angle_other_deg 0.862 r_chiral_restr 0.122 r_bond_refined_d 0.015 r_gen_planes_refined 0.012 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_dihedral_angle_4_deg r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4692 Nucleic Acid Atoms Solvent Atoms 65 Heterogen Atoms 99
Software Software Software Name Purpose REFMAC refinement DIALS data reduction DIALS data scaling PHASER phasing