AF_AFQ9H6I2F1

Computed structure model of Transcription factor SOX-17

External Resource: Annotation

Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Transcription factor SOX-17	DNA binding sequence-specific DNA binding sequence-specific double-stranded DNA binding transcription cis-regulatory region binding binding double-stranded DNA binding nucleic acid binding transcription regulatory region nucleic acid binding transcription factor binding RNA polymerase II-specific DNA-binding transcription factor binding protein binding DNA-binding transcription factor binding RNA polymerase II transcription regulatory region sequence-specific DNA binding cis-regulatory region sequence-specific DNA binding DNA binding sequence-specific DNA binding sequence-specific double-stranded DNA binding transcription cis-regulatory region binding binding double-stranded DNA binding nucleic acid binding transcription regulatory region nucleic acid binding transcription factor binding RNA polymerase II-specific DNA-binding transcription factor binding protein binding DNA-binding transcription factor binding RNA polymerase II transcription regulatory region sequence-specific DNA binding cis-regulatory region sequence-specific DNA binding RNA polymerase II cis-regulatory region sequence-specific DNA binding DNA-binding transcription factor activity, RNA polymerase II-specific transcription regulator activity DNA-binding transcription factor activity beta-catenin binding DNA-binding transcription activator activity, RNA polymerase II-specific DNA-binding transcription activator activity	developmental process heart development multicellular organismal process animal organ development endocardium development circulatory system development anatomical structure morphogenesis multicellular organism development anatomical structure development anatomical structure formation involved in morphogenesis endocardium morphogenesis endocardium formation system development heart formation developmental process heart development multicellular organismal process animal organ development endocardium development circulatory system development anatomical structure morphogenesis multicellular organism development anatomical structure development anatomical structure formation involved in morphogenesis endocardium morphogenesis endocardium formation system development heart formation heart morphogenesis animal organ morphogenesis animal organ formation regulation of protein stability biological regulation regulation of biological quality protein stabilization digestive system development foregut morphogenesis tube development embryonic morphogenesis embryo development digestive tract development tube morphogenesis embryonic foregut morphogenesis digestive tract morphogenesis protein destabilization blood vessel morphogenesis angiogenesis vasculature development blood vessel development cellular response to stimulus regulation of cellular process response to stimulus signaling negative regulation of signaling regulation of canonical Wnt signaling pathway canonical Wnt signaling pathway negative regulation of biological process regulation of signal transduction negative regulation of cell communication cell communication negative regulation of Wnt signaling pathway negative regulation of cellular process signal transduction Wnt signaling pathway regulation of biological process regulation of signaling cell surface receptor signaling pathway regulation of Wnt signaling pathway negative regulation of response to stimulus negative regulation of signal transduction negative regulation of canonical Wnt signaling pathway regulation of response to stimulus regulation of cell communication cellular process regulation of growth regulation of cellular component organization growth negative regulation of cell growth regulation of cell growth cell growth cellular component organization negative regulation of growth cellular component organization or biogenesis catabolic process positive regulation of protein metabolic process positive regulation of biological process macromolecule catabolic process regulation of primary metabolic process positive regulation of metabolic process positive regulation of macromolecule metabolic process protein metabolic process positive regulation of cellular process regulation of protein metabolic process primary metabolic process regulation of macromolecule metabolic process protein catabolic process regulation of catabolic process positive regulation of protein catabolic process positive regulation of catabolic process metabolic process macromolecule metabolic process regulation of metabolic process regulation of protein catabolic process cardiogenic plate morphogenesis epithelium development tissue development embryonic heart tube development embryonic organ development RNA metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process biosynthetic process endodermal digestive tract morphogenesis ureter development renal system development embryonic heart tube morphogenesis epithelial tube morphogenesis embryonic organ morphogenesis morphogenesis of an epithelium tissue morphogenesis regulation of RNA metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of biosynthetic process regulation of gene expression regulation of macromolecule biosynthetic process regulation of DNA-templated transcription cellular developmental process vasculogenesis cell differentiation metanephros development kidney development positive regulation of DNA-templated transcription positive regulation of macromolecule biosynthetic process positive regulation of biosynthetic process positive regulation of RNA metabolic process positive regulation of RNA biosynthetic process formation of primary germ layer gastrulation endoderm development endoderm formation cell fate determination cardiocyte differentiation cardiac cell fate determination cardiac cell fate commitment cell fate commitment endodermal cell fate specification cell fate specification cell fate commitment involved in formation of primary germ layer endodermal cell fate commitment endodermal cell differentiation response to chemical response to nitrogen compound response to alkaloid regulation of embryonic development regulation of multicellular organismal development regulation of developmental process regulation of multicellular organismal process transcription by RNA polymerase II regulation of transcription by RNA polymerase II endothelial cell differentiation endothelium development cardiac endothelial cell differentiation epithelial cell differentiation endocardial cell differentiation positive regulation of transcription by RNA polymerase II regulation of cell differentiation cardiac cell fate specification regulation of cell fate commitment regulation of cell fate specification regulation of cardiocyte differentiation regulation of cardiac cell fate specification pattern specification process heart looping determination of bilateral symmetry determination of left/right symmetry specification of symmetry determination of heart left/right asymmetry regionalization left/right pattern formation outflow tract morphogenesis	protein-containing complex transcription regulator complex membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen intracellular organelle cellular anatomical structure nucleoplasm organelle lumen organelle nuclear lumen protein-containing complex transcription regulator complex membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen intracellular organelle cellular anatomical structure nucleoplasm organelle lumen organelle nuclear lumen membraneless organelle intracellular membraneless organelle chromatin chromosome

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR033392	Sox 7/17/18, central domain	Domain
A	IPR021934	Sox, C-terminal	Domain
A	IPR050140	SRY-related HMG-box transcription factor-like	Family
A	IPR009071	High mobility group box domain	Domain
A	IPR036910	High mobility group box domain superfamily	Homologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A	: Q9H6I2	vesicoureteral reflux 3 Teratogenesis vesicoureteral reflux colorectal cancer congenital anomaly of kidney and urinary tract pancreatic intraductal papillary-mucinous neoplasm pulmonary arterial hypertension adenoma breast carcinoma colorectal carcinoma ductal breast carcinoma in situ interstitial cystitis lung cancer ovarian cancer pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia vesicoureteral reflux 3 Teratogenesis vesicoureteral reflux colorectal cancer congenital anomaly of kidney and urinary tract pancreatic intraductal papillary-mucinous neoplasm pulmonary arterial hypertension adenoma breast carcinoma colorectal carcinoma ductal breast carcinoma in situ interstitial cystitis lung cancer ovarian cancer pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia brain aneurysm breast fibroadenoma idiopathic pulmonary arterial hypertension invasive ductal breast carcinoma non-small cell lung carcinoma pancreatic intraductal papillary-mucinous carcinoma psoriasis breast cancer intellectual disability lung adenocarcinoma osteosarcoma

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.