9ZWE | pdb_00009zwe

Soluble ectodomain of Herpes simplex virus 2 (HSV-2) glycoprotein B (gB) in the prefusion conformation in complex with 2c and D48 Fabs

External Resource: Annotation


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
H [auth D]Ribosomal_S18e9zweD1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: Ribosomal_S18ECOD (v295)
MRibosomal_S18e9zweM1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: Ribosomal_S18ECOD (v295)
C [auth I]Ribosomal_S18e9zweI1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: Ribosomal_S18ECOD (v295)

SAbDab Antibody Annotation SAbDab Database Homepage

ChainChain ClassChain SubclassChain TypeAntigen Name(s) Provenance Source
E [auth K],
J [auth F],
O		Light ChainIGKV1 Kappaenvelope glycoprotein bSAbDab (2026-07-10)
D [auth J],
I [auth E],
N		Heavy ChainIGHV8 -envelope glycoprotein bSAbDab (2026-07-10)
C [auth I],
H [auth D],
M		Light ChainIGKV1 Kappaenvelope glycoprotein bSAbDab (2026-07-10)
B [auth H],
G [auth C],
L		Heavy ChainIGHV3 -envelope glycoprotein bSAbDab (2026-07-10)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A [auth B],
F [auth A],
K [auth G]		PF17417Herpesvirus Glycoprotein B PH-like domain (Glycoprot_B_PH2)Herpesvirus Glycoprotein B PH-like domainThis domain corresponds to the second PH-like domain in herpesvirus glycoprotein B. Domain
A [auth B],
F [auth A],
K [auth G]		PF17416Herpesvirus Glycoprotein B (Glycoprot_B_PH1)Herpesvirus Glycoprotein BThis domain has a PH-like fold. Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
E [auth K],
J [auth F],
O		Antibody 2c Light Chain---
D [auth J],
I [auth E],
N		Antibody 2c Heavy Chain---
C [auth I],
H [auth D],
M		Antibody D48 Light Chain---
B [auth H],
G [auth C],
L		Antibody D48 Heavy Chain---
A [auth B],
F [auth A],
K [auth G]		Envelope glycoprotein B-

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A [auth B],
F [auth A],
K [auth G]		IPR000234Herpesvirus Glycoprotein BFamily
A [auth B],
F [auth A],
K [auth G]		IPR035381Herpesvirus Glycoprotein B, PH-like domain 2Domain
A [auth B],
F [auth A],
K [auth G]		IPR035377Herpesvirus Glycoprotein B, PH-like domain 1Domain
A [auth B],
F [auth A],
K [auth G]		IPR055341Herpesvirus glycoprotein B ectodomain C-terminalDomain
A [auth B],
F [auth A],
K [auth G]		IPR038631Herpesvirus Glycoprotein B, PH-like domain 2 superfamilyHomologous Superfamily