9WXP | pdb_00009wxp

cryo-EM structure of a mammalian collagen fibril

External Resource: Annotation

Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Protein Modification Annotation

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth AA], DB [auth FA], GD [auth KA], JF [auth PA]	Collagen alpha-1(V) chain	structural molecule activity extracellular matrix structural constituent	-	cellular anatomical structure extracellular region
C [auth CA], FB [auth HA], ID [auth MA], LF [auth RA]	Fibrillar collagen NC1 domain-containing protein	structural molecule activity extracellular matrix structural constituent	-	cellular anatomical structure extracellular region
F [auth AC], IB [auth FC], LD [auth KC], OF [auth PC]	Collagen type XI alpha 1 chain	structural molecule activity extracellular matrix structural constituent	-	-
G [auth BC], JB [auth GC], MD [auth LC], PF [auth QC]	Collagen type XI alpha 1 chain	structural molecule activity extracellular matrix structural constituent	-	-
H [auth CC], KB [auth HC], ND [auth MC], QF [auth RC]	Collagen type XI alpha 1 chain	structural molecule activity extracellular matrix structural constituent	-	-
I [auth DC], LB [auth IC], OD [auth NC], RF [auth SC]	Fibrillar collagen NC1 domain-containing protein	structural molecule activity extracellular matrix structural constituent	-	cellular anatomical structure extracellular region
K [auth AB], NB [auth FB], QD [auth KB], TF [auth PB]	Chromaffin granule amine transporter isoform X1	structural molecule activity extracellular matrix structural constituent cation binding ion binding binding metal ion binding small molecule binding	-	cellular anatomical structure extracellular region
L [auth BB], OB [auth GB], RD [auth LB], UF [auth QB]	Collagen type V alpha 2 chain	structural molecule activity extracellular matrix structural constituent cation binding ion binding binding metal ion binding small molecule binding	-	-
AG [auth PF], EA [auth AG], FA [auth AH], GA [auth AI], HC [auth FG], AG [auth PF], EA [auth AG], FA [auth AH], GA [auth AI], HC [auth FG], IC [auth FH], JC [auth FI], KE [auth KG], LE [auth KH], ME [auth KI], NG [auth PG], OG [auth PH], P [auth AD], PG [auth PI], Q [auth AE], R [auth AF], SB [auth FD], TB [auth FE], UB [auth FF], VD [auth KD], WD [auth KE], XD [auth KF], YF [auth PD], ZF [auth PE]	Collagen type II alpha 1 chain	structural molecule activity extracellular matrix structural constituent cation binding ion binding binding metal ion binding small molecule binding	-	-
AE [auth LF], BG [auth QD], CG [auth QE], DG [auth QF], HA [auth BG], AE [auth LF], BG [auth QD], CG [auth QE], DG [auth QF], HA [auth BG], IA [auth BH], JA [auth BI], KC [auth GG], LC [auth GH], MC [auth GI], NE [auth LG], OE [auth LH], PE [auth LI], QG, RG [auth QH], S [auth BD], SG [auth QI], T [auth BE], U [auth BF], VB [auth GD], WB [auth GE], XB [auth GF], YD [auth LD], ZD [auth LE]	Collagen type II alpha 1 chain	structural molecule activity extracellular matrix structural constituent cation binding ion binding binding metal ion binding small molecule binding	-	-
AC [auth HF], BE [auth MD], CE [auth ME], DE [auth MF], EG [auth RD], AC [auth HF], BE [auth MD], CE [auth ME], DE [auth MF], EG [auth RD], FG [auth RE], GG [auth RF], KA [auth CG], LA [auth CH], MA [auth CI], NC [auth HG], OC [auth HH], PC [auth HI], QE [auth MG], RE [auth MH], SE [auth MI], TG [auth RG], UG [auth RH], V [auth CD], VG [auth RI], W [auth CE], X [auth CF], YB [auth HD], ZB [auth HE]	Collagen type II alpha 1 chain	structural molecule activity extracellular matrix structural constituent cation binding ion binding binding metal ion binding small molecule binding	-	-
AA [auth DF], BC [auth ID], CC [auth IE], DC [auth IF], EE [auth ND], AA [auth DF], BC [auth ID], CC [auth IE], DC [auth IF], EE [auth ND], FE [auth NE], GE [auth NF], HG [auth SD], IG [auth SE], JG [auth SF], NA [auth DG], OA [auth DH], PA [auth DI], QC [auth IG], RC [auth IH], SC [auth II], TE [auth NG], UE [auth NH], VE [auth NI], WG [auth SG], XG [auth SH], Y [auth DD], YG [auth SI], Z [auth DE]	Collagen type II alpha 1 chain	structural molecule activity extracellular matrix structural constituent cation binding ion binding binding metal ion binding small molecule binding	-	-
AF [auth HJ], DH [auth KJ], UA [auth BJ], XC [auth EJ]	Collagen alpha-1(IX) chain	binding carbohydrate binding identical protein binding protein binding protein homodimerization activity protein dimerization activity	developmental process anatomical structure morphogenesis anatomical structure development animal organ development animal organ morphogenesis animal gross anatomical part developmental process	solid phase of interstitial matrix protein-containing complex extracellular matrix extracellular region collagen trimer FACIT collagen complex cellular anatomical structure collagen type IX trimer external encapsulating structure complex of collagen trimers FACIT collagen trimer extracellular protein-containing complex supramolecular complex collagenous component of interstitial matrix solid phase of interstitial matrix protein-containing complex extracellular matrix extracellular region collagen trimer FACIT collagen complex cellular anatomical structure collagen type IX trimer external encapsulating structure complex of collagen trimers FACIT collagen trimer extracellular protein-containing complex supramolecular complex collagenous component of interstitial matrix interstitial matrix
CD [auth DL], FF [auth GL], IH [auth JL], ZA [auth AL]	Collagen alpha-3(IX) chain	identical protein binding protein binding binding protein homodimerization activity protein dimerization activity	-	solid phase of interstitial matrix protein-containing complex extracellular matrix extracellular region collagen trimer FACIT collagen complex cellular anatomical structure collagen type IX trimer external encapsulating structure complex of collagen trimers FACIT collagen trimer extracellular protein-containing complex supramolecular complex collagenous component of interstitial matrix solid phase of interstitial matrix protein-containing complex extracellular matrix extracellular region collagen trimer FACIT collagen complex cellular anatomical structure collagen type IX trimer external encapsulating structure complex of collagen trimers FACIT collagen trimer extracellular protein-containing complex supramolecular complex collagenous component of interstitial matrix interstitial matrix
BB [auth CL], ED [auth FL], HF [auth IL], KH [auth LL]	Collagen alpha-3(IX) chain	identical protein binding protein binding binding protein homodimerization activity protein dimerization activity	-	solid phase of interstitial matrix protein-containing complex extracellular matrix extracellular region collagen trimer FACIT collagen complex cellular anatomical structure collagen type IX trimer external encapsulating structure complex of collagen trimers FACIT collagen trimer extracellular protein-containing complex supramolecular complex collagenous component of interstitial matrix solid phase of interstitial matrix protein-containing complex extracellular matrix extracellular region collagen trimer FACIT collagen complex cellular anatomical structure collagen type IX trimer external encapsulating structure complex of collagen trimers FACIT collagen trimer extracellular protein-containing complex supramolecular complex collagenous component of interstitial matrix interstitial matrix
E [auth EA], HB [auth JA], KD [auth OA], NF [auth TA]	Fibrillar collagen NC1 domain-containing protein	structural molecule activity extracellular matrix structural constituent	-	cellular anatomical structure extracellular region
D [auth DA], GB [auth IA], JD [auth NA], MF [auth SA]	Fibrillar collagen NC1 domain-containing protein	structural molecule activity extracellular matrix structural constituent	-	cellular anatomical structure extracellular region
CB [auth AM], FD [auth BM], IF [auth CM], LH [auth DM]	Opticin	-	-	-
AB [auth BL], DD [auth EL], GF [auth HL], JH [auth KL]	Collagen alpha-3(IX) chain	-	-	-
BD [auth FK], EF [auth IK], HH [auth LK], YA [auth CK]	Collagen type IX alpha 2 chain	-	-	-
AD [auth EK], DF [auth HK], GH [auth KK], XA [auth BK]	Collagen type IX alpha 2 chain	-	-	-
CF [auth GK], FH [auth JK], WA [auth AK], ZC [auth DK]	Collagen type IX alpha 2 chain	-	-	-
BF [auth IJ], EH [auth LJ], VA [auth CJ], YC [auth FJ]	Collagen alpha-1(IX) chain	-	developmental process anatomical structure morphogenesis anatomical structure development animal organ development animal organ morphogenesis animal gross anatomical part developmental process	-
CH [auth JJ], TA [auth AJ], WC [auth DJ], ZE [auth GJ]	Collagen type IX alpha 1 chain	-	-	-
AH [auth TH], BA [auth ED], BH [auth TI], CA [auth EE], DA [auth EF], AH [auth TH], BA [auth ED], BH [auth TI], CA [auth EE], DA [auth EF], EC [auth JD], FC [auth JE], GC [auth JF], HE [auth OD], IE [auth OE], JE [auth OF], KG [auth TD], LG [auth TE], MG [auth TF], QA [auth EG], RA [auth EH], SA [auth EI], TC [auth JG], UC [auth JH], VC [auth JI], WE [auth OG], XE [auth OH], YE [auth OI], ZG [auth TG]	Collagen type II alpha 1 chain	structural molecule activity extracellular matrix structural constituent cation binding ion binding binding metal ion binding small molecule binding	-	-
B [auth BA], EB [auth GA], HD [auth LA], KF [auth QA]	Fibrillar collagen NC1 domain-containing protein	structural molecule activity extracellular matrix structural constituent	-	cellular anatomical structure extracellular region
O [auth EB], RB [auth JB], UD [auth OB], XF [auth TB]	Collagen alpha-2(V) chain preproprotein	structural molecule activity extracellular matrix structural constituent cation binding ion binding binding metal ion binding small molecule binding	-	cellular anatomical structure extracellular region
N [auth DB], QB [auth IB], TD [auth NB], WF [auth SB]	Collagen alpha-2(V) chain preproprotein	structural molecule activity extracellular matrix structural constituent cation binding ion binding binding metal ion binding small molecule binding	-	cellular anatomical structure extracellular region
M [auth CB], PB [auth HB], SD [auth MB], VF [auth RB]	Collagen type V alpha 2 chain	structural molecule activity extracellular matrix structural constituent cation binding ion binding binding metal ion binding small molecule binding	-	cellular anatomical structure extracellular region
J [auth EC], MB [auth JC], PD [auth OC], SF [auth TC]	Fibrillar collagen NC1 domain-containing protein	structural molecule activity extracellular matrix structural constituent	-	cellular anatomical structure extracellular region

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth AA], DB [auth FA], GD [auth KA], JF [auth PA]	IPR008160	Collagen triple helix repeat	Repeat
A [auth AA], DB [auth FA], GD [auth KA], JF [auth PA]	IPR013320	Concanavalin A-like lectin/glucanase domain superfamily	Homologous Superfamily
A [auth AA], DB [auth FA], GD [auth KA], JF [auth PA]	IPR001791	Laminin G domain	Domain
A [auth AA], DB [auth FA], GD [auth KA], JF [auth PA]	IPR050938	Collagen and Collagen-like Structural Proteins	Family
A [auth AA], DB [auth FA], GD [auth KA], JF [auth PA]	IPR000885	Fibrillar collagen, C-terminal	Domain
A [auth AA], DB [auth FA], GD [auth KA], JF [auth PA]	IPR048287	Thrombospondin-like, N-terminal domain	Domain
C [auth CA], FB [auth HA], ID [auth MA], LF [auth RA]	IPR008160	Collagen triple helix repeat	Repeat
C [auth CA], FB [auth HA], ID [auth MA], LF [auth RA]	IPR013320	Concanavalin A-like lectin/glucanase domain superfamily	Homologous Superfamily
C [auth CA], FB [auth HA], ID [auth MA], LF [auth RA]	IPR001791	Laminin G domain	Domain
C [auth CA], FB [auth HA], ID [auth MA], LF [auth RA]	IPR050149	Collagen_superfamily	Unknown
C [auth CA], FB [auth HA], ID [auth MA], LF [auth RA]	IPR000885	Fibrillar collagen, C-terminal	Domain
C [auth CA], FB [auth HA], ID [auth MA], LF [auth RA]	IPR048287	Thrombospondin-like, N-terminal domain	Domain
F [auth AC], IB [auth FC], LD [auth KC], OF [auth PC]	IPR008160	Collagen triple helix repeat	Repeat
F [auth AC], IB [auth FC], LD [auth KC], OF [auth PC]	IPR013320	Concanavalin A-like lectin/glucanase domain superfamily	Homologous Superfamily
F [auth AC], IB [auth FC], LD [auth KC], OF [auth PC]	IPR001791	Laminin G domain	Domain
F [auth AC], IB [auth FC], LD [auth KC], OF [auth PC]	IPR050149	Collagen_superfamily	Unknown
F [auth AC], IB [auth FC], LD [auth KC], OF [auth PC]	IPR000885	Fibrillar collagen, C-terminal	Domain
F [auth AC], IB [auth FC], LD [auth KC], OF [auth PC]	IPR048287	Thrombospondin-like, N-terminal domain	Domain
G [auth BC], JB [auth GC], MD [auth LC], PF [auth QC]	IPR008160	Collagen triple helix repeat	Repeat
G [auth BC], JB [auth GC], MD [auth LC], PF [auth QC]	IPR013320	Concanavalin A-like lectin/glucanase domain superfamily	Homologous Superfamily
G [auth BC], JB [auth GC], MD [auth LC], PF [auth QC]	IPR001791	Laminin G domain	Domain
G [auth BC], JB [auth GC], MD [auth LC], PF [auth QC]	IPR050149	Collagen_superfamily	Unknown
G [auth BC], JB [auth GC], MD [auth LC], PF [auth QC]	IPR000885	Fibrillar collagen, C-terminal	Domain
G [auth BC], JB [auth GC], MD [auth LC], PF [auth QC]	IPR048287	Thrombospondin-like, N-terminal domain	Domain
H [auth CC], KB [auth HC], ND [auth MC], QF [auth RC]	IPR008160	Collagen triple helix repeat	Repeat
H [auth CC], KB [auth HC], ND [auth MC], QF [auth RC]	IPR013320	Concanavalin A-like lectin/glucanase domain superfamily	Homologous Superfamily
H [auth CC], KB [auth HC], ND [auth MC], QF [auth RC]	IPR001791	Laminin G domain	Domain
H [auth CC], KB [auth HC], ND [auth MC], QF [auth RC]	IPR050149	Collagen_superfamily	Unknown
H [auth CC], KB [auth HC], ND [auth MC], QF [auth RC]	IPR000885	Fibrillar collagen, C-terminal	Domain
H [auth CC], KB [auth HC], ND [auth MC], QF [auth RC]	IPR048287	Thrombospondin-like, N-terminal domain	Domain
I [auth DC], LB [auth IC], OD [auth NC], RF [auth SC]	IPR008160	Collagen triple helix repeat	Repeat
I [auth DC], LB [auth IC], OD [auth NC], RF [auth SC]	IPR013320	Concanavalin A-like lectin/glucanase domain superfamily	Homologous Superfamily
I [auth DC], LB [auth IC], OD [auth NC], RF [auth SC]	IPR001791	Laminin G domain	Domain
I [auth DC], LB [auth IC], OD [auth NC], RF [auth SC]	IPR050938	Collagen and Collagen-like Structural Proteins	Family
I [auth DC], LB [auth IC], OD [auth NC], RF [auth SC]	IPR000885	Fibrillar collagen, C-terminal	Domain
I [auth DC], LB [auth IC], OD [auth NC], RF [auth SC]	IPR048287	Thrombospondin-like, N-terminal domain	Domain
K [auth AB], NB [auth FB], QD [auth KB], TF [auth PB]	IPR008160	Collagen triple helix repeat	Repeat
K [auth AB], NB [auth FB], QD [auth KB], TF [auth PB]	IPR050149	Collagen_superfamily	Unknown
K [auth AB], NB [auth FB], QD [auth KB], TF [auth PB]	IPR000885	Fibrillar collagen, C-terminal	Domain
K [auth AB], NB [auth FB], QD [auth KB], TF [auth PB]	IPR001007	VWFC domain	Domain
L [auth BB], OB [auth GB], RD [auth LB], UF [auth QB]	IPR008160	Collagen triple helix repeat	Repeat
L [auth BB], OB [auth GB], RD [auth LB], UF [auth QB]	IPR050149	Collagen_superfamily	Unknown
L [auth BB], OB [auth GB], RD [auth LB], UF [auth QB]	IPR000885	Fibrillar collagen, C-terminal	Domain
L [auth BB], OB [auth GB], RD [auth LB], UF [auth QB]	IPR001007	VWFC domain	Domain
AG [auth PF], EA [auth AG], FA [auth AH], GA [auth AI], HC [auth FG], AG [auth PF], EA [auth AG], FA [auth AH], GA [auth AI], HC [auth FG], IC [auth FH], JC [auth FI], KE [auth KG], LE [auth KH], ME [auth KI], NG [auth PG], OG [auth PH], P [auth AD], PG [auth PI], Q [auth AE], R [auth AF], SB [auth FD], TB [auth FE], UB [auth FF], VD [auth KD], WD [auth KE], XD [auth KF], YF [auth PD], ZF [auth PE]	IPR008160	Collagen triple helix repeat	Repeat
AG [auth PF], EA [auth AG], FA [auth AH], GA [auth AI], HC [auth FG], AG [auth PF], EA [auth AG], FA [auth AH], GA [auth AI], HC [auth FG], IC [auth FH], JC [auth FI], KE [auth KG], LE [auth KH], ME [auth KI], NG [auth PG], OG [auth PH], P [auth AD], PG [auth PI], Q [auth AE], R [auth AF], SB [auth FD], TB [auth FE], UB [auth FF], VD [auth KD], WD [auth KE], XD [auth KF], YF [auth PD], ZF [auth PE]	IPR050149	Collagen_superfamily	Unknown
AG [auth PF], EA [auth AG], FA [auth AH], GA [auth AI], HC [auth FG], AG [auth PF], EA [auth AG], FA [auth AH], GA [auth AI], HC [auth FG], IC [auth FH], JC [auth FI], KE [auth KG], LE [auth KH], ME [auth KI], NG [auth PG], OG [auth PH], P [auth AD], PG [auth PI], Q [auth AE], R [auth AF], SB [auth FD], TB [auth FE], UB [auth FF], VD [auth KD], WD [auth KE], XD [auth KF], YF [auth PD], ZF [auth PE]	IPR000885	Fibrillar collagen, C-terminal	Domain
AE [auth LF], BG [auth QD], CG [auth QE], DG [auth QF], HA [auth BG], AE [auth LF], BG [auth QD], CG [auth QE], DG [auth QF], HA [auth BG], IA [auth BH], JA [auth BI], KC [auth GG], LC [auth GH], MC [auth GI], NE [auth LG], OE [auth LH], PE [auth LI], QG, RG [auth QH], S [auth BD], SG [auth QI], T [auth BE], U [auth BF], VB [auth GD], WB [auth GE], XB [auth GF], YD [auth LD], ZD [auth LE]	IPR008160	Collagen triple helix repeat	Repeat
AE [auth LF], BG [auth QD], CG [auth QE], DG [auth QF], HA [auth BG], AE [auth LF], BG [auth QD], CG [auth QE], DG [auth QF], HA [auth BG], IA [auth BH], JA [auth BI], KC [auth GG], LC [auth GH], MC [auth GI], NE [auth LG], OE [auth LH], PE [auth LI], QG, RG [auth QH], S [auth BD], SG [auth QI], T [auth BE], U [auth BF], VB [auth GD], WB [auth GE], XB [auth GF], YD [auth LD], ZD [auth LE]	IPR050149	Collagen_superfamily	Unknown
AE [auth LF], BG [auth QD], CG [auth QE], DG [auth QF], HA [auth BG], AE [auth LF], BG [auth QD], CG [auth QE], DG [auth QF], HA [auth BG], IA [auth BH], JA [auth BI], KC [auth GG], LC [auth GH], MC [auth GI], NE [auth LG], OE [auth LH], PE [auth LI], QG, RG [auth QH], S [auth BD], SG [auth QI], T [auth BE], U [auth BF], VB [auth GD], WB [auth GE], XB [auth GF], YD [auth LD], ZD [auth LE]	IPR000885	Fibrillar collagen, C-terminal	Domain
AC [auth HF], BE [auth MD], CE [auth ME], DE [auth MF], EG [auth RD], AC [auth HF], BE [auth MD], CE [auth ME], DE [auth MF], EG [auth RD], FG [auth RE], GG [auth RF], KA [auth CG], LA [auth CH], MA [auth CI], NC [auth HG], OC [auth HH], PC [auth HI], QE [auth MG], RE [auth MH], SE [auth MI], TG [auth RG], UG [auth RH], V [auth CD], VG [auth RI], W [auth CE], X [auth CF], YB [auth HD], ZB [auth HE]	IPR008160	Collagen triple helix repeat	Repeat
AC [auth HF], BE [auth MD], CE [auth ME], DE [auth MF], EG [auth RD], AC [auth HF], BE [auth MD], CE [auth ME], DE [auth MF], EG [auth RD], FG [auth RE], GG [auth RF], KA [auth CG], LA [auth CH], MA [auth CI], NC [auth HG], OC [auth HH], PC [auth HI], QE [auth MG], RE [auth MH], SE [auth MI], TG [auth RG], UG [auth RH], V [auth CD], VG [auth RI], W [auth CE], X [auth CF], YB [auth HD], ZB [auth HE]	IPR050149	Collagen_superfamily	Unknown
AC [auth HF], BE [auth MD], CE [auth ME], DE [auth MF], EG [auth RD], AC [auth HF], BE [auth MD], CE [auth ME], DE [auth MF], EG [auth RD], FG [auth RE], GG [auth RF], KA [auth CG], LA [auth CH], MA [auth CI], NC [auth HG], OC [auth HH], PC [auth HI], QE [auth MG], RE [auth MH], SE [auth MI], TG [auth RG], UG [auth RH], V [auth CD], VG [auth RI], W [auth CE], X [auth CF], YB [auth HD], ZB [auth HE]	IPR000885	Fibrillar collagen, C-terminal	Domain
AA [auth DF], BC [auth ID], CC [auth IE], DC [auth IF], EE [auth ND], AA [auth DF], BC [auth ID], CC [auth IE], DC [auth IF], EE [auth ND], FE [auth NE], GE [auth NF], HG [auth SD], IG [auth SE], JG [auth SF], NA [auth DG], OA [auth DH], PA [auth DI], QC [auth IG], RC [auth IH], SC [auth II], TE [auth NG], UE [auth NH], VE [auth NI], WG [auth SG], XG [auth SH], Y [auth DD], YG [auth SI], Z [auth DE]	IPR008160	Collagen triple helix repeat	Repeat
AA [auth DF], BC [auth ID], CC [auth IE], DC [auth IF], EE [auth ND], AA [auth DF], BC [auth ID], CC [auth IE], DC [auth IF], EE [auth ND], FE [auth NE], GE [auth NF], HG [auth SD], IG [auth SE], JG [auth SF], NA [auth DG], OA [auth DH], PA [auth DI], QC [auth IG], RC [auth IH], SC [auth II], TE [auth NG], UE [auth NH], VE [auth NI], WG [auth SG], XG [auth SH], Y [auth DD], YG [auth SI], Z [auth DE]	IPR050149	Collagen_superfamily	Unknown
AA [auth DF], BC [auth ID], CC [auth IE], DC [auth IF], EE [auth ND], AA [auth DF], BC [auth ID], CC [auth IE], DC [auth IF], EE [auth ND], FE [auth NE], GE [auth NF], HG [auth SD], IG [auth SE], JG [auth SF], NA [auth DG], OA [auth DH], PA [auth DI], QC [auth IG], RC [auth IH], SC [auth II], TE [auth NG], UE [auth NH], VE [auth NI], WG [auth SG], XG [auth SH], Y [auth DD], YG [auth SI], Z [auth DE]	IPR000885	Fibrillar collagen, C-terminal	Domain
AF [auth HJ], DH [auth KJ], UA [auth BJ], XC [auth EJ]	IPR008160	Collagen triple helix repeat	Repeat
AF [auth HJ], DH [auth KJ], UA [auth BJ], XC [auth EJ]	IPR013320	Concanavalin A-like lectin/glucanase domain superfamily	Homologous Superfamily
AF [auth HJ], DH [auth KJ], UA [auth BJ], XC [auth EJ]	IPR050149	Collagen_superfamily	Unknown
AF [auth HJ], DH [auth KJ], UA [auth BJ], XC [auth EJ]	IPR048287	Thrombospondin-like, N-terminal domain	Domain
CD [auth DL], FF [auth GL], IH [auth JL], ZA [auth AL]	IPR008160	Collagen triple helix repeat	Repeat
CD [auth DL], FF [auth GL], IH [auth JL], ZA [auth AL]	IPR050149	Collagen_superfamily	Unknown
BB [auth CL], ED [auth FL], HF [auth IL], KH [auth LL]	IPR008160	Collagen triple helix repeat	Repeat
BB [auth CL], ED [auth FL], HF [auth IL], KH [auth LL]	IPR050149	Collagen_superfamily	Unknown
E [auth EA], HB [auth JA], KD [auth OA], NF [auth TA]	IPR008160	Collagen triple helix repeat	Repeat
E [auth EA], HB [auth JA], KD [auth OA], NF [auth TA]	IPR013320	Concanavalin A-like lectin/glucanase domain superfamily	Homologous Superfamily
E [auth EA], HB [auth JA], KD [auth OA], NF [auth TA]	IPR001791	Laminin G domain	Domain
E [auth EA], HB [auth JA], KD [auth OA], NF [auth TA]	IPR050149	Collagen_superfamily	Unknown
E [auth EA], HB [auth JA], KD [auth OA], NF [auth TA]	IPR000885	Fibrillar collagen, C-terminal	Domain
E [auth EA], HB [auth JA], KD [auth OA], NF [auth TA]	IPR048287	Thrombospondin-like, N-terminal domain	Domain
D [auth DA], GB [auth IA], JD [auth NA], MF [auth SA]	IPR008160	Collagen triple helix repeat	Repeat
D [auth DA], GB [auth IA], JD [auth NA], MF [auth SA]	IPR013320	Concanavalin A-like lectin/glucanase domain superfamily	Homologous Superfamily
D [auth DA], GB [auth IA], JD [auth NA], MF [auth SA]	IPR001791	Laminin G domain	Domain
D [auth DA], GB [auth IA], JD [auth NA], MF [auth SA]	IPR050938	Collagen and Collagen-like Structural Proteins	Family
D [auth DA], GB [auth IA], JD [auth NA], MF [auth SA]	IPR000885	Fibrillar collagen, C-terminal	Domain
D [auth DA], GB [auth IA], JD [auth NA], MF [auth SA]	IPR048287	Thrombospondin-like, N-terminal domain	Domain
CB [auth AM], FD [auth BM], IF [auth CM], LH [auth DM]	IPR032675	Leucine-rich repeat domain superfamily	Homologous Superfamily
CB [auth AM], FD [auth BM], IF [auth CM], LH [auth DM]	IPR001611	Leucine-rich repeat	Repeat
CB [auth AM], FD [auth BM], IF [auth CM], LH [auth DM]	IPR043547	Mimecan/Epiphycan/Opticin	Family
CB [auth AM], FD [auth BM], IF [auth CM], LH [auth DM]	IPR003591	Leucine-rich repeat, typical subtype	Repeat
AB [auth BL], DD [auth EL], GF [auth HL], JH [auth KL]	IPR008160	Collagen triple helix repeat	Repeat
AB [auth BL], DD [auth EL], GF [auth HL], JH [auth KL]	IPR050149	Collagen_superfamily	Unknown
BD [auth FK], EF [auth IK], HH [auth LK], YA [auth CK]	IPR008160	Collagen triple helix repeat	Repeat
BD [auth FK], EF [auth IK], HH [auth LK], YA [auth CK]	IPR050149	Collagen_superfamily	Unknown
AD [auth EK], DF [auth HK], GH [auth KK], XA [auth BK]	IPR008160	Collagen triple helix repeat	Repeat
AD [auth EK], DF [auth HK], GH [auth KK], XA [auth BK]	IPR050149	Collagen_superfamily	Unknown
CF [auth GK], FH [auth JK], WA [auth AK], ZC [auth DK]	IPR008160	Collagen triple helix repeat	Repeat
CF [auth GK], FH [auth JK], WA [auth AK], ZC [auth DK]	IPR050149	Collagen_superfamily	Unknown
BF [auth IJ], EH [auth LJ], VA [auth CJ], YC [auth FJ]	IPR008160	Collagen triple helix repeat	Repeat
BF [auth IJ], EH [auth LJ], VA [auth CJ], YC [auth FJ]	IPR013320	Concanavalin A-like lectin/glucanase domain superfamily	Homologous Superfamily
BF [auth IJ], EH [auth LJ], VA [auth CJ], YC [auth FJ]	IPR050149	Collagen_superfamily	Unknown
BF [auth IJ], EH [auth LJ], VA [auth CJ], YC [auth FJ]	IPR048287	Thrombospondin-like, N-terminal domain	Domain
CH [auth JJ], TA [auth AJ], WC [auth DJ], ZE [auth GJ]	IPR008160	Collagen triple helix repeat	Repeat
CH [auth JJ], TA [auth AJ], WC [auth DJ], ZE [auth GJ]	IPR050149	Collagen_superfamily	Unknown
AH [auth TH], BA [auth ED], BH [auth TI], CA [auth EE], DA [auth EF], AH [auth TH], BA [auth ED], BH [auth TI], CA [auth EE], DA [auth EF], EC [auth JD], FC [auth JE], GC [auth JF], HE [auth OD], IE [auth OE], JE [auth OF], KG [auth TD], LG [auth TE], MG [auth TF], QA [auth EG], RA [auth EH], SA [auth EI], TC [auth JG], UC [auth JH], VC [auth JI], WE [auth OG], XE [auth OH], YE [auth OI], ZG [auth TG]	IPR008160	Collagen triple helix repeat	Repeat
AH [auth TH], BA [auth ED], BH [auth TI], CA [auth EE], DA [auth EF], AH [auth TH], BA [auth ED], BH [auth TI], CA [auth EE], DA [auth EF], EC [auth JD], FC [auth JE], GC [auth JF], HE [auth OD], IE [auth OE], JE [auth OF], KG [auth TD], LG [auth TE], MG [auth TF], QA [auth EG], RA [auth EH], SA [auth EI], TC [auth JG], UC [auth JH], VC [auth JI], WE [auth OG], XE [auth OH], YE [auth OI], ZG [auth TG]	IPR050149	Collagen_superfamily	Unknown
AH [auth TH], BA [auth ED], BH [auth TI], CA [auth EE], DA [auth EF], AH [auth TH], BA [auth ED], BH [auth TI], CA [auth EE], DA [auth EF], EC [auth JD], FC [auth JE], GC [auth JF], HE [auth OD], IE [auth OE], JE [auth OF], KG [auth TD], LG [auth TE], MG [auth TF], QA [auth EG], RA [auth EH], SA [auth EI], TC [auth JG], UC [auth JH], VC [auth JI], WE [auth OG], XE [auth OH], YE [auth OI], ZG [auth TG]	IPR000885	Fibrillar collagen, C-terminal	Domain
B [auth BA], EB [auth GA], HD [auth LA], KF [auth QA]	IPR008160	Collagen triple helix repeat	Repeat
B [auth BA], EB [auth GA], HD [auth LA], KF [auth QA]	IPR013320	Concanavalin A-like lectin/glucanase domain superfamily	Homologous Superfamily
B [auth BA], EB [auth GA], HD [auth LA], KF [auth QA]	IPR001791	Laminin G domain	Domain
B [auth BA], EB [auth GA], HD [auth LA], KF [auth QA]	IPR050149	Collagen_superfamily	Unknown
B [auth BA], EB [auth GA], HD [auth LA], KF [auth QA]	IPR000885	Fibrillar collagen, C-terminal	Domain
B [auth BA], EB [auth GA], HD [auth LA], KF [auth QA]	IPR048287	Thrombospondin-like, N-terminal domain	Domain
O [auth EB], RB [auth JB], UD [auth OB], XF [auth TB]	IPR008160	Collagen triple helix repeat	Repeat
O [auth EB], RB [auth JB], UD [auth OB], XF [auth TB]	IPR050149	Collagen_superfamily	Unknown
O [auth EB], RB [auth JB], UD [auth OB], XF [auth TB]	IPR000885	Fibrillar collagen, C-terminal	Domain
O [auth EB], RB [auth JB], UD [auth OB], XF [auth TB]	IPR001007	VWFC domain	Domain
N [auth DB], QB [auth IB], TD [auth NB], WF [auth SB]	IPR008160	Collagen triple helix repeat	Repeat
N [auth DB], QB [auth IB], TD [auth NB], WF [auth SB]	IPR050149	Collagen_superfamily	Unknown
N [auth DB], QB [auth IB], TD [auth NB], WF [auth SB]	IPR000885	Fibrillar collagen, C-terminal	Domain
N [auth DB], QB [auth IB], TD [auth NB], WF [auth SB]	IPR001007	VWFC domain	Domain
M [auth CB], PB [auth HB], SD [auth MB], VF [auth RB]	IPR008160	Collagen triple helix repeat	Repeat
M [auth CB], PB [auth HB], SD [auth MB], VF [auth RB]	IPR050149	Collagen_superfamily	Unknown
M [auth CB], PB [auth HB], SD [auth MB], VF [auth RB]	IPR000885	Fibrillar collagen, C-terminal	Domain
M [auth CB], PB [auth HB], SD [auth MB], VF [auth RB]	IPR001007	VWFC domain	Domain
J [auth EC], MB [auth JC], PD [auth OC], SF [auth TC]	IPR008160	Collagen triple helix repeat	Repeat
J [auth EC], MB [auth JC], PD [auth OC], SF [auth TC]	IPR013320	Concanavalin A-like lectin/glucanase domain superfamily	Homologous Superfamily
J [auth EC], MB [auth JC], PD [auth OC], SF [auth TC]	IPR001791	Laminin G domain	Domain
J [auth EC], MB [auth JC], PD [auth OC], SF [auth TC]	IPR050938	Collagen and Collagen-like Structural Proteins	Family
J [auth EC], MB [auth JC], PD [auth OC], SF [auth TC]	IPR000885	Fibrillar collagen, C-terminal	Domain
J [auth EC], MB [auth JC], PD [auth OC], SF [auth TC]	IPR048287	Thrombospondin-like, N-terminal domain	Domain

Protein Modification Annotation

Modified Residue(s)
Chain	Residue(s)	Description
A [auth AA], DB [auth FA], GD [auth KA], JF [auth PA]	LYZ	Parent Component: LYS : AA0028 : 5-hydroxy-L-lysine MOD:00037
C [auth CA], FB [auth HA], ID [auth MA], LF [auth RA]	LYZ	Parent Component: LYS : AA0028 , AA0028 : 5-hydroxy-L-lysine MOD:00037 , 5-hydroxy-L-lysine MOD:00037
F [auth AC], IB [auth FC], LD [auth KC], OF [auth PC]	LYZ	Parent Component: LYS : AA0028 , AA0028 , AA0028 : 5-hydroxy-L-lysine MOD:00037 , 5-hydroxy-L-lysine MOD:00037 , 5-hydroxy-L-lysine MOD:00037
G [auth BC], JB [auth GC], MD [auth LC], PF [auth QC]	LYZ	Parent Component: LYS : AA0028 , AA0028 , AA0028 , AA0028 : 5-hydroxy-L-lysine MOD:00037 , 5-hydroxy-L-lysine MOD:00037 , 5-hydroxy-L-lysine MOD:00037 , 5-hydroxy-L-lysine MOD:00037
H [auth CC], KB [auth HC], ND [auth MC], QF [auth RC]	LYZ	Parent Component: LYS : AA0028 , AA0028 , AA0028 , AA0028 , AA0028 : 5-hydroxy-L-lysine MOD:00037 , 5-hydroxy-L-lysine MOD:00037 , 5-hydroxy-L-lysine MOD:00037 , 5-hydroxy-L-lysine MOD:00037 , 5-hydroxy-L-lysine MOD:00037
I [auth DC], LB [auth IC], OD [auth NC], RF [auth SC]	LYZ	Parent Component: LYS : AA0028 , AA0028 , AA0028 , AA0028 , AA0028 , AA0028 : 5-hydroxy-L-lysine MOD:00037 , 5-hydroxy-L-lysine MOD:00037 , 5-hydroxy-L-lysine MOD:00037 , 5-hydroxy-L-lysine MOD:00037 , 5-hydroxy-L-lysine MOD:00037 , 5-hydroxy-L-lysine MOD:00037
K [auth AB], NB [auth FB], QD [auth KB], TF [auth PB]	LYZ	Parent Component: LYS : AA0028 , AA0028 , AA0028 , AA0028 , AA0028 , AA0028 , AA0028 : 5-hydroxy-L-lysine MOD:00037 , 5-hydroxy-L-lysine MOD:00037 , 5-hydroxy-L-lysine MOD:00037 , 5-hydroxy-L-lysine MOD:00037 , 5-hydroxy-L-lysine MOD:00037 , 5-hydroxy-L-lysine MOD:00037 , 5-hydroxy-L-lysine MOD:00037
L [auth BB], OB [auth GB], RD [auth LB], UF [auth QB]	LYZ	Parent Component: LYS : AA0028 , AA0028 , AA0028 , AA0028 , AA0028 , AA0028 , AA0028 , AA0028 : 5-hydroxy-L-lysine MOD:00037 , 5-hydroxy-L-lysine MOD:00037 , 5-hydroxy-L-lysine MOD:00037 , 5-hydroxy-L-lysine MOD:00037 , 5-hydroxy-L-lysine MOD:00037 , 5-hydroxy-L-lysine MOD:00037 , 5-hydroxy-L-lysine MOD:00037 , 5-hydroxy-L-lysine MOD:00037
E [auth EA], HB [auth JA], KD [auth OA], NF [auth TA]	LYZ	Parent Component: LYS : AA0028 , AA0028 , AA0028 , AA0028 , AA0028 , AA0028 , AA0028 , AA0028 , AA0028 : 5-hydroxy-L-lysine MOD:00037 , 5-hydroxy-L-lysine MOD:00037 , 5-hydroxy-L-lysine MOD:00037 , 5-hydroxy-L-lysine MOD:00037 , 5-hydroxy-L-lysine MOD:00037 , 5-hydroxy-L-lysine MOD:00037 , 5-hydroxy-L-lysine MOD:00037 , 5-hydroxy-L-lysine MOD:00037 , 5-hydroxy-L-lysine MOD:00037
D [auth DA], GB [auth IA], JD [auth NA], MF [auth SA]	LYZ	Parent Component: LYS : AA0028 , AA0028 , AA0028 , AA0028 , AA0028 , AA0028 , AA0028 , AA0028 , AA0028 , AA0028 : 5-hydroxy-L-lysine MOD:00037 , 5-hydroxy-L-lysine MOD:00037 , 5-hydroxy-L-lysine MOD:00037 , 5-hydroxy-L-lysine MOD:00037 , 5-hydroxy-L-lysine MOD:00037 , 5-hydroxy-L-lysine MOD:00037 , 5-hydroxy-L-lysine MOD:00037 , 5-hydroxy-L-lysine MOD:00037 , 5-hydroxy-L-lysine MOD:00037 , 5-hydroxy-L-lysine MOD:00037
B [auth BA], EB [auth GA], HD [auth LA], KF [auth QA]	LYZ	Parent Component: LYS : AA0028 , AA0028 , AA0028 , AA0028 , AA0028 , AA0028 , AA0028 , AA0028 , AA0028 , AA0028 , AA0028 : 5-hydroxy-L-lysine MOD:00037 , 5-hydroxy-L-lysine MOD:00037 , 5-hydroxy-L-lysine MOD:00037 , 5-hydroxy-L-lysine MOD:00037 , 5-hydroxy-L-lysine MOD:00037 , 5-hydroxy-L-lysine MOD:00037 , 5-hydroxy-L-lysine MOD:00037 , 5-hydroxy-L-lysine MOD:00037 , 5-hydroxy-L-lysine MOD:00037 , 5-hydroxy-L-lysine MOD:00037 , 5-hydroxy-L-lysine MOD:00037
N [auth DB], QB [auth IB], TD [auth NB], WF [auth SB]	LYZ	Parent Component: LYS : AA0028 , AA0028 , AA0028 , AA0028 , AA0028 , AA0028 , AA0028 , AA0028 , AA0028 , AA0028 , AA0028 , AA0028 : 5-hydroxy-L-lysine MOD:00037 , 5-hydroxy-L-lysine MOD:00037 , 5-hydroxy-L-lysine MOD:00037 , 5-hydroxy-L-lysine MOD:00037 , 5-hydroxy-L-lysine MOD:00037 , 5-hydroxy-L-lysine MOD:00037 , 5-hydroxy-L-lysine MOD:00037 , 5-hydroxy-L-lysine MOD:00037 , 5-hydroxy-L-lysine MOD:00037 , 5-hydroxy-L-lysine MOD:00037 , 5-hydroxy-L-lysine MOD:00037 , 5-hydroxy-L-lysine MOD:00037
M [auth CB], PB [auth HB], SD [auth MB], VF [auth RB]	LYZ	Parent Component: LYS : AA0028 , AA0028 , AA0028 , AA0028 , AA0028 , AA0028 , AA0028 , AA0028 , AA0028 , AA0028 , AA0028 , AA0028 , AA0028 : 5-hydroxy-L-lysine MOD:00037 , 5-hydroxy-L-lysine MOD:00037 , 5-hydroxy-L-lysine MOD:00037 , 5-hydroxy-L-lysine MOD:00037 , 5-hydroxy-L-lysine MOD:00037 , 5-hydroxy-L-lysine MOD:00037 , 5-hydroxy-L-lysine MOD:00037 , 5-hydroxy-L-lysine MOD:00037 , 5-hydroxy-L-lysine MOD:00037 , 5-hydroxy-L-lysine MOD:00037 , 5-hydroxy-L-lysine MOD:00037 , 5-hydroxy-L-lysine MOD:00037 , 5-hydroxy-L-lysine MOD:00037
J [auth EC], MB [auth JC], PD [auth OC], SF [auth TC]	LYZ	Parent Component: LYS : AA0028 , AA0028 , AA0028 , AA0028 , AA0028 , AA0028 , AA0028 , AA0028 , AA0028 , AA0028 , AA0028 , AA0028 , AA0028 , AA0028 : 5-hydroxy-L-lysine MOD:00037 , 5-hydroxy-L-lysine MOD:00037 , 5-hydroxy-L-lysine MOD:00037 , 5-hydroxy-L-lysine MOD:00037 , 5-hydroxy-L-lysine MOD:00037 , 5-hydroxy-L-lysine MOD:00037 , 5-hydroxy-L-lysine MOD:00037 , 5-hydroxy-L-lysine MOD:00037 , 5-hydroxy-L-lysine MOD:00037 , 5-hydroxy-L-lysine MOD:00037 , 5-hydroxy-L-lysine MOD:00037 , 5-hydroxy-L-lysine MOD:00037 , 5-hydroxy-L-lysine MOD:00037 , 5-hydroxy-L-lysine MOD:00037

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.