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 9WFZ | pdb_00009wfz

Cryo-EM structure of PSII PsbA3-S264V from Thermosynechococcus vestitus BP-1 (local refinement)


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
I [auth D]SCOP2B SuperfamilyBacterial photosystem II reaction centre, L and M subunits 8032750 3000736 SCOP2B (2022-06-29)
E [auth Y]SCOP2B SuperfamilyPhotosystem II reaction center protein Ycf12 8093136 3002680 SCOP2B (2022-06-29)
D [auth V]SCOP2B SuperfamilyCytochrome c 8036565 3000815 SCOP2B (2022-06-29)
C [auth T]SCOP2B SuperfamilyPhotosystem II reaction center protein T, PsbT 8032769 3001561 SCOP2B (2022-06-29)
B [auth K]SCOP2B SuperfamilyPhotosystem II reaction center protein K, PsbK 8032757 3001585 SCOP2B (2022-06-29)
P [auth U]SCOP2B SuperfamilyPsbU/PolX domain-like 8032768 3000893 SCOP2B (2022-06-29)
L [auth J]SCOP2B SuperfamilyPhotosystem II reaction center protein J, PsbJ 8032755 3001534 SCOP2B (2022-06-29)
K [auth F]SCOP2B SuperfamilyCytochrome b559 subunits 8032752 3001602 SCOP2B (2022-06-29)
A [auth I]SCOP2B SuperfamilyPhotosystem II reaction center protein I, PsbI 8032754 3001590 SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
I [auth D]PF00124Photosynthetic reaction centre protein (Photo_RC)Photosynthetic reaction centre protein- Family
H [auth C]PF00421Photosystem II protein (PSII)Photosystem II protein- Family
F [auth A]PF00124Photosynthetic reaction centre protein (Photo_RC)Photosynthetic reaction centre protein- Family
C [auth T]PF01405Photosystem II reaction centre T protein (PsbT)Photosystem II reaction centre T proteinThe exact function of this protein is unknown. It probably consists of a single transmembrane spanning helix. The Swiss:P37256 protein, appears to be (i) a novel photosystem II subunit and (ii) required for maintaining optimal photosystem II activity ...The exact function of this protein is unknown. It probably consists of a single transmembrane spanning helix. The Swiss:P37256 protein, appears to be (i) a novel photosystem II subunit and (ii) required for maintaining optimal photosystem II activity under adverse growth conditions [1].
Domain
R [auth Z]PF01737YCF9 (Ycf9)YCF9- Family
P [auth U]PF06514Photosystem II 12 kDa extrinsic protein (PsbU) (PsbU)Photosystem II 12 kDa extrinsic protein (PsbU)- Family
N [auth M]PF05151Photosystem II reaction centre M protein (PsbM) (PsbM)Photosystem II reaction centre M protein (PsbM)- Family
J [auth E]PF00283Cytochrome b559, alpha (gene psbE) and beta (gene psbF)subunits (Cytochrom_B559)Cytochrome b559, alpha (gene psbE) and beta (gene psbF)subunits- Family
A [auth I]PF02532Photosystem II reaction centre I protein (PSII 4.8 kDa protein) (PsbI)Photosystem II reaction centre I protein (PSII 4.8 kDa protein)- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
I [auth D]Photosystem II D2 protein
H [auth C]Photosystem II CP43 reaction center protein
G [auth B],
S [auth b]
Photosystem II CP47 reaction center protein
F [auth A]Photosystem II protein D1 3
E [auth Y]Photosystem II reaction center protein Psb30-
D [auth V]Photosystem II extrinsic protein V
C [auth T]Photosystem II reaction center protein T-
B [auth K]Photosystem II reaction center protein K-
R [auth Z]Photosystem II reaction center protein Z-
Q [auth X]Photosystem II reaction center protein X-
P [auth U]Photosystem II extrinsic protein U-
Photosystem II extrinsic protein O
N [auth M]Photosystem II reaction center protein M-
M [auth L]Photosystem II reaction center protein L-
L [auth J]Photosystem II reaction center protein J-
K [auth F]Cytochrome b559 subunit beta
J [auth E]Cytochrome b559 subunit alpha
A [auth I]Photosystem II reaction center protein I-

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
I [auth D]IPR005868Photosystem II D2Family
I [auth D]IPR036854Photosystem II protein D1/D2 superfamilyHomologous Superfamily
I [auth D]IPR000484Photosynthetic reaction centre, L/MFamily
I [auth D]IPR055265Photosynthetic reaction centre, L/M, conserved siteConserved Site
I [auth D]IPR055266Photosystem II protein D1/D2Family
H [auth C]IPR036001Photosystem antenna protein-like superfamilyHomologous Superfamily
H [auth C]IPR000932Photosystem antenna protein-likeFamily
H [auth C]IPR005869Photosystem II CP43 reaction centre proteinFamily
H [auth C]IPR044900Photosystem II CP43 reaction centre protein superfamilyHomologous Superfamily
G [auth B],
S [auth b]
IPR036001Photosystem antenna protein-like superfamilyHomologous Superfamily
G [auth B],
S [auth b]
IPR000932Photosystem antenna protein-likeFamily
G [auth B],
S [auth b]
IPR017486Photosystem II CP47 reaction centre proteinFamily
F [auth A]IPR005867Photosystem II protein D1Family
F [auth A]IPR036854Photosystem II protein D1/D2 superfamilyHomologous Superfamily
F [auth A]IPR000484Photosynthetic reaction centre, L/MFamily
F [auth A]IPR055265Photosynthetic reaction centre, L/M, conserved siteConserved Site
F [auth A]IPR055266Photosystem II protein D1/D2Family
E [auth Y]IPR010284Photosystem II reaction center protein Ycf12Family
D [auth V]IPR017851Photosystem II extrinsic protein V, cytochrome c-550 precursorFamily
D [auth V]IPR016003Photosystem II extrinsic protein V, cytochrome c-550 precursor-likeFamily
D [auth V]IPR036909Cytochrome c-like domain superfamilyHomologous Superfamily
D [auth V]IPR009056Cytochrome c-like domainDomain
D [auth V]IPR029490Cytochrome c-550 domainDomain
C [auth T]IPR001743Photosystem II PsbTFamily
C [auth T]IPR037268Photosystem II PsbT superfamilyHomologous Superfamily
B [auth K]IPR037270Photosystem II PsbK superfamilyHomologous Superfamily
B [auth K]IPR003687Photosystem II PsbKFamily
R [auth Z]IPR036512Photosystem II PsbZ superfamilyHomologous Superfamily
R [auth Z]IPR002644Photosystem II PsbZ, reaction centreFamily
Q [auth X]IPR009518Photosystem II PsbXFamily
Q [auth X]IPR023431Photosystem II PsbX, type 1 subfamilyFamily
P [auth U]IPR010527Photosystem II PsbU, oxygen evolving complexFamily
IPR011250Outer membrane protein/outer membrane enzyme PagP-like, beta-barrel superfamilyHomologous Superfamily
IPR002628Photosystem II extrinsic protein OFamily
N [auth M]IPR007826Photosystem II PsbMFamily
N [auth M]IPR037269Photosystem II PsbM superfamilyHomologous Superfamily
M [auth L]IPR003372Photosystem II PsbLFamily
M [auth L]IPR037266Photosystem II PsbL superfamilyHomologous Superfamily
L [auth J]IPR002682Photosystem II PsbJFamily
L [auth J]IPR037267Photosystem II PsbJ superfamilyHomologous Superfamily
K [auth F]IPR006241Photosystem II cytochrome b559, beta subunitFamily
K [auth F]IPR013081Photosystem II cytochrome b559, N-terminalDomain
K [auth F]IPR006216Photosystem II cytochrome b559, conserved siteConserved Site
J [auth E]IPR013081Photosystem II cytochrome b559, N-terminalDomain
J [auth E]IPR006217Photosystem II cytochrome b559, alpha subunitFamily
J [auth E]IPR013082Photosystem II cytochrome b559, alpha subunit, lumenal regionDomain
J [auth E]IPR037025Photosystem II cytochrome b559, alpha subunit superfamilyHomologous Superfamily
J [auth E]IPR006216Photosystem II cytochrome b559, conserved siteConserved Site
A [auth I]IPR037271Photosystem II PsbI superfamilyHomologous Superfamily
A [auth I]IPR003686Photosystem II PsbIFamily