9WD5 | pdb_00009wd5

Cryo-EM structure of PSI-CpcL

External Resource: Annotation


Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
GA [auth J],
I [auth T],
SA [auth j],
U [auth t]		PF01701Photosystem I reaction centre subunit IX / PsaJ (PSI_PsaJ)Photosystem I reaction centre subunit IX / PsaJ- Family
FA [auth F],
H [auth S],
RA [auth f],
T [auth s]		PF02507Photosystem I reaction centre subunit III (PSI_PsaF)Photosystem I reaction centre subunit III- Family
EA [auth E],
G [auth R],
QA [auth e],
S [auth r]		PF02427Photosystem I reaction centre subunit IV / PsaE (PSI_PsaE)Photosystem I reaction centre subunit IV / PsaEPsaE is a 69 amino acid polypeptide from photosystem I present on the stromal side of the thylakoid membrane [1]. The structure is comprised of a well-defined five-stranded beta-sheet similar to SH3 domains [1]. Domain
DA [auth D],
F [auth Q],
PA [auth d],
R [auth q]		PF02531PsaD (PsaD)PsaD- Family
CA [auth C],
E [auth P],
OA [auth c],
Q [auth p]		PF128384Fe-4S dicluster domain (Fer4_7)4Fe-4S dicluster domainSuperfamily includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Domain contai ...Superfamily includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Domain contains two 4Fe4S clusters.
Domain
BA [auth B],
D [auth N],
NA [auth b],
P [auth n]		PF00223Photosystem I psaA/psaB protein (PsaA_PsaB)Photosystem I psaA/psaB protein- Family
B [auth G],
LA [auth a],
N [auth g],
Z [auth A]		PF00223Photosystem I psaA/psaB protein (PsaA_PsaB)Photosystem I psaA/psaB protein- Family
KA [auth M],
M [auth Y],
WA [auth m],
Y [auth y]		PF07465Photosystem I protein M (PsaM) (PsaM)Photosystem I protein M (PsaM)- Family
JA [auth L],
L [auth W],
VA [auth l],
X [auth w]		PF02605Photosystem I reaction centre subunit XI (PsaL)Photosystem I reaction centre subunit XI- Family
IA [auth I],
K [auth V],
UA [auth i],
W [auth v]		PF00796Photosystem I reaction centre subunit VIII (PSI_8)Photosystem I reaction centre subunit VIII- Family
HA [auth K],
J [auth U],
TA [auth k],
V [auth u]		PF01241Photosystem I psaG / psaK (PSI_PSAK)Photosystem I psaG / psaK- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
GA [auth J],
I [auth T],
SA [auth j],
U [auth t]		Photosystem I reaction center subunit IX-
FA [auth F],
H [auth S],
RA [auth f],
T [auth s]		Photosystem I reaction center subunit III-
EA [auth E],
G [auth R],
QA [auth e],
S [auth r]		Photosystem I reaction center subunit IV-
DA [auth D],
F [auth Q],
PA [auth d],
R [auth q]		Photosystem I reaction center subunit II-
CA [auth C],
E [auth P],
OA [auth c],
Q [auth p]		Photosystem I iron-sulfur center
BA [auth B],
D [auth N],
NA [auth b],
P [auth n]		Photosystem I P700 chlorophyll a apoprotein A2 1
AA [auth X],
C [auth H],
MA [auth x],
O [auth h]		Photosystem I 4.8 kDa protein-
B [auth G],
LA [auth a],
N [auth g],
Z [auth A]		Photosystem I P700 chlorophyll a apoprotein A1
KA [auth M],
M [auth Y],
WA [auth m],
Y [auth y]		Photosystem I reaction center subunit XII-
JA [auth L],
L [auth W],
VA [auth l],
X [auth w]		Photosystem I reaction center subunit XI-
IA [auth I],
K [auth V],
UA [auth i],
W [auth v]		Photosystem I reaction center subunit VIII-
HA [auth K],
J [auth U],
TA [auth k],
V [auth u]		Photosystem I reaction center subunit PsaK 1-
A [auth 1]Photosystem I-associated linker protein CpcL-

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
GA [auth J],
I [auth T],
SA [auth j],
U [auth t]		IPR002615Photosystem I PsaJ, reaction centre subunit IXFamily
GA [auth J],
I [auth T],
SA [auth j],
U [auth t]		IPR036062Photosystem I PsaJ, reaction centre subunit IX superfamilyHomologous Superfamily
FA [auth F],
H [auth S],
RA [auth f],
T [auth s]		IPR036577Photosystem I PsaF, reaction centre subunit III superfamilyHomologous Superfamily
FA [auth F],
H [auth S],
RA [auth f],
T [auth s]		IPR003666Photosystem I PsaF, reaction centre subunit IIIFamily
EA [auth E],
G [auth R],
QA [auth e],
S [auth r]		IPR008990Electron transport accessory-like domain superfamilyHomologous Superfamily
EA [auth E],
G [auth R],
QA [auth e],
S [auth r]		IPR003375Photosystem I PsaE, reaction centre subunit IVFamily
DA [auth D],
F [auth Q],
PA [auth d],
R [auth q]		IPR003685Photosystem I PsaDFamily
DA [auth D],
F [auth Q],
PA [auth d],
R [auth q]		IPR036579Photosystem I, reaction centre subunit PsaD superfamilyHomologous Superfamily
CA [auth C],
E [auth P],
OA [auth c],
Q [auth p]		IPR0179004Fe-4S ferredoxin, iron-sulphur binding, conserved siteConserved Site
CA [auth C],
E [auth P],
OA [auth c],
Q [auth p]		IPR050157Photosystem I iron-sulfur centerFamily
CA [auth C],
E [auth P],
OA [auth c],
Q [auth p]		IPR0178964Fe-4S ferredoxin-type, iron-sulphur binding domainDomain
CA [auth C],
E [auth P],
OA [auth c],
Q [auth p]		IPR017491Photosystem I protein PsaCFamily
BA [auth B],
D [auth N],
NA [auth b],
P [auth n]		IPR036408Photosystem I PsaA/PsaB superfamilyHomologous Superfamily
BA [auth B],
D [auth N],
NA [auth b],
P [auth n]		IPR001280Photosystem I PsaA/PsaBFamily
BA [auth B],
D [auth N],
NA [auth b],
P [auth n]		IPR006244Photosystem I PsaBFamily
BA [auth B],
D [auth N],
NA [auth b],
P [auth n]		IPR020586Photosystem I PsaA/PsaB, conserved siteConserved Site
AA [auth X],
C [auth H],
MA [auth x],
O [auth h]		IPR036243Photosystem I PsaX superfamilyHomologous Superfamily
AA [auth X],
C [auth H],
MA [auth x],
O [auth h]		IPR012986Photosystem I PsaXFamily
B [auth G],
LA [auth a],
N [auth g],
Z [auth A]		IPR006243Photosystem I PsaAFamily
B [auth G],
LA [auth a],
N [auth g],
Z [auth A]		IPR036408Photosystem I PsaA/PsaB superfamilyHomologous Superfamily
B [auth G],
LA [auth a],
N [auth g],
Z [auth A]		IPR001280Photosystem I PsaA/PsaBFamily
B [auth G],
LA [auth a],
N [auth g],
Z [auth A]		IPR020586Photosystem I PsaA/PsaB, conserved siteConserved Site
KA [auth M],
M [auth Y],
WA [auth m],
Y [auth y]		IPR010010Photosystem I PsaM, reaction centreFamily
KA [auth M],
M [auth Y],
WA [auth m],
Y [auth y]		IPR037279Photosystem I PsaM, reaction centre superfamilyHomologous Superfamily
JA [auth L],
L [auth W],
VA [auth l],
X [auth w]		IPR003757Photosystem I PsaL, reaction centre subunit XIDomain
JA [auth L],
L [auth W],
VA [auth l],
X [auth w]		IPR022980Photosystem I, reaction centre subunit XIFamily
JA [auth L],
L [auth W],
VA [auth l],
X [auth w]		IPR036592Photosystem I PsaL, reaction centre subunit XI superfamilyHomologous Superfamily
IA [auth I],
K [auth V],
UA [auth i],
W [auth v]		IPR036357Photosystem I reaction centre subunit VIII superfamilyHomologous Superfamily
IA [auth I],
K [auth V],
UA [auth i],
W [auth v]		IPR001302Photosystem I reaction centre subunit VIIIFamily
HA [auth K],
J [auth U],
TA [auth k],
V [auth u]		IPR037101Photosystem I reaction centre subunit PsaKHomologous Superfamily
HA [auth K],
J [auth U],
TA [auth k],
V [auth u]		IPR000549Photosystem I reaction center subunit V/PsaKFamily
HA [auth K],
J [auth U],
TA [auth k],
V [auth u]		IPR035982Photosystem I reaction centre subunit PsaK superfamilyHomologous Superfamily
HA [auth K],
J [auth U],
TA [auth k],
V [auth u]		IPR017492Photosystem I reaction center subunit PsaKFamily
A [auth 1]IPR016470Phycobilisome linker proteinFamily
A [auth 1]IPR001297Phycobilisome linker domainDomain
A [auth 1]IPR038255Phycobilisome linker domain superfamilyHomologous Superfamily