9W2X | pdb_00009w2x

Cryo-EM structure of complex III on the bovine heart submitochondrial particles, III-1


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
TSCOP2B SuperfamilyNon-globular alpha+beta subunits of globular proteins 8041511 3001542 SCOP2B (2022-06-29)
ISCOP2B SuperfamilyNon-globular alpha+beta subunits of globular proteins 8041511 3001542 SCOP2B (2022-06-29)
SSCOP2B SuperfamilyNon-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 8038275 3000806 SCOP2B (2022-06-29)
HSCOP2B SuperfamilyNon-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 8038275 3000806 SCOP2B (2022-06-29)
RSCOP2B SuperfamilyUbiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 8038274 3000770 SCOP2B (2022-06-29)
GSCOP2B SuperfamilyUbiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 8038274 3000770 SCOP2B (2022-06-29)
QSCOP2B Superfamily14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 8038272 3000797 SCOP2B (2022-06-29)
FSCOP2B Superfamily14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 8038272 3000797 SCOP2B (2022-06-29)
PSCOP2B SuperfamilyISP transmembrane anchor 8038269 3000753 SCOP2B (2022-06-29)
PSCOP2B SuperfamilyISP domain 8038267 3000233 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyISP domain 8038267 3000233 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyISP transmembrane anchor 8038269 3000753 SCOP2B (2022-06-29)
OSCOP2B SuperfamilyCytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor 8038268 3000762 SCOP2B (2022-06-29)
OSCOP2B SuperfamilyCytochrome c 8038266 3000815 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyCytochrome c 8038266 3000815 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyCytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor 8038268 3000762 SCOP2B (2022-06-29)
NSCOP2B Superfamilya domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 8038264 3000966 SCOP2B (2022-06-29)
NSCOP2B SuperfamilyTransmembrane di-heme cytochromes 8038265 3000517 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyTransmembrane di-heme cytochromes 8038265 3000517 SCOP2B (2022-06-29)
CSCOP2B Superfamilya domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 8038264 3000966 SCOP2B (2022-06-29)
MSCOP2B SuperfamilyLuxS/MPP-like metallohydrolase 8038263 3001831 SCOP2B (2022-06-29)
MSCOP2B SuperfamilyLuxS/MPP-like metallohydrolase 8038260 3001831 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyLuxS/MPP-like metallohydrolase 8038263 3001831 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyLuxS/MPP-like metallohydrolase 8038260 3001831 SCOP2B (2022-06-29)
VSCOP2B SuperfamilySubunit XI (6.4 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 8032884 3000787 SCOP2B (2022-06-29)
KSCOP2B SuperfamilySubunit XI (6.4 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 8032884 3000787 SCOP2B (2022-06-29)
USCOP2B SuperfamilySubunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 8037844 3000779 SCOP2B (2022-06-29)
JSCOP2B SuperfamilySubunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 8037844 3000779 SCOP2B (2022-06-29)
LSCOP2B SuperfamilyLuxS/MPP-like metallohydrolase 8038259 3001831 SCOP2B (2022-06-29)
LSCOP2B SuperfamilyLuxS/MPP-like metallohydrolase 8038258 3001831 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyLuxS/MPP-like metallohydrolase 8038259 3001831 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyLuxS/MPP-like metallohydrolase 8038258 3001831 SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
I, T
PF09165Ubiquinol-cytochrome c reductase 8 kDa, N-terminal (Ubiq-Cytc-red_N)Ubiquinol-cytochrome c reductase 8 kDa, N-terminalMembers of this family adopt a structure consisting of many antiparallel beta sheets, with few alpha helices, in a non-globular arrangement. They are required for proper functioning of the respiratory chain [1]. Domain
H, S
PF02320Ubiquinol-cytochrome C reductase hinge protein (UCR_hinge)Ubiquinol-cytochrome C reductase hinge proteinThe ubiquinol-cytochrome C reductase complex (cytochrome bc1 complex) is a respiratory multienzyme complex [1]. This Pfam family represents the 'hinge' protein of the complex which is thought to mediate formation of the cytochrome c1 and cytochrome c ...The ubiquinol-cytochrome C reductase complex (cytochrome bc1 complex) is a respiratory multienzyme complex [1]. This Pfam family represents the 'hinge' protein of the complex which is thought to mediate formation of the cytochrome c1 and cytochrome c complex.
Domain
G, R
PF02939UcrQ family (UcrQ)UcrQ family- Family
F, Q
PF02271Ubiquinol-cytochrome C reductase complex 14kD subunit (UCR_14kD)Ubiquinol-cytochrome C reductase complex 14kD subunit- Family
E, P
PF02921Ubiquinol cytochrome reductase transmembrane region (UCR_TM)Ubiquinol cytochrome reductase transmembrane region- Family
E, P
PF00355Rieske [2Fe-2S] domain (Rieske)Rieske [2Fe-2S] domainThe rieske domain has a [2Fe-2S] centre. Two conserved cysteines coordinate one Fe ion, while the other Fe ion is coordinated by two conserved histidines. In hyperthermophilic archaea there is a SKTPCX(2-3)C motif at the C-terminus. The cysteines in ...The rieske domain has a [2Fe-2S] centre. Two conserved cysteines coordinate one Fe ion, while the other Fe ion is coordinated by two conserved histidines. In hyperthermophilic archaea there is a SKTPCX(2-3)C motif at the C-terminus. The cysteines in this motif form a disulphide bridge, which stabilises the protein [4].
Domain
D, O
PF02167Cytochrome C1 family (Cytochrom_C1)Cytochrome C1 family- Family
C, N
PF00032Cytochrome b(C-terminal)/b6/petD (Cytochrom_B_C)Cytochrome b(C-terminal)/b6/petDDomain
C, N
PF00033Cytochrome b/b6/petB (Cytochrome_B)Cytochrome b/b6/petBDomain
B, M
PF05193Peptidase M16 inactive domain (Peptidase_M16_C)Peptidase M16 inactive domainPeptidase M16 consists of two structurally related domains. One is the active peptidase, whereas the other is inactive. The two domains hold the substrate like a clamp [1]. Domain
B, M
PF00675Insulinase (Peptidase family M16) (Peptidase_M16)Insulinase (Peptidase family M16)- Family
K, V
PF08997Ubiquinol-cytochrome C reductase complex, 6.4kD protein (UCR_6-4kD)Ubiquinol-cytochrome C reductase complex, 6.4kD proteinThe ubiquinol-cytochrome C reductase complex (cytochrome bc1 complex) is an essential component of the mitochondrial cellular respiratory chain. This family represents the 6.4kD protein, which may be closely linked to the iron-sulphur protein in the ...The ubiquinol-cytochrome C reductase complex (cytochrome bc1 complex) is an essential component of the mitochondrial cellular respiratory chain. This family represents the 6.4kD protein, which may be closely linked to the iron-sulphur protein in the complex and function as an iron-sulphur protein binding factor [1].
Domain
J, U
PF05365Cytochrome b-c1 complex subunit 9 (UCR_UQCRX_QCR9)Cytochrome b-c1 complex subunit 9- Family
A, L
PF05193Peptidase M16 inactive domain (Peptidase_M16_C)Peptidase M16 inactive domainPeptidase M16 consists of two structurally related domains. One is the active peptidase, whereas the other is inactive. The two domains hold the substrate like a clamp [1]. Domain
A, L
PF00675Insulinase (Peptidase family M16) (Peptidase_M16)Insulinase (Peptidase family M16)- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
I, T
Cytochrome b-c1 complex subunit 9
H, S
Cytochrome b-c1 complex subunit 6, mitochondrial-
G, R
Cytochrome b-c1 complex subunit 8-
F, Q
Cytochrome b-c1 complex subunit 7-
E, P
Cytochrome b-c1 complex subunit Rieske, mitochondrial
D, O
Cytochrome c1, heme protein, mitochondrial
C, N
Cytochrome b
B, M
Cytochrome b-c1 complex subunit 2, mitochondrial
K, V
Cytochrome b-c1 complex subunit 10-
J, U
Cytochrome b-c1 complex subunit 9-
A, L
Cytochrome b-c1 complex subunit 1, mitochondrial -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
I, T
IPR036922Rieske [2Fe-2S] iron-sulphur domain superfamilyHomologous Superfamily
I, T
IPR014349Rieske iron-sulphur proteinFamily
I, T
IPR011070Globular protein, non-globular alpha/beta subunitHomologous Superfamily
I, T
IPR004192Cytochrome b-c1 complex subunit Rieske, transmembrane domainDomain
I, T
IPR015248Ubiquinol-cytochrome c reductase iron-sulphur subunit, N-terminalDomain
I, T
IPR017941Rieske [2Fe-2S] iron-sulphur domainDomain
I, T
IPR005805Rieske iron-sulphur protein, C-terminalDomain
I, T
IPR037008Cytochrome bc1 complex subunit Rieske, transmembrane domain superfamilyHomologous Superfamily
I, T
IPR006317Ubiquinol-cytochrome c reductase, iron-sulphur subunitDomain
H, S
IPR003422Cytochrome b-c1 complex, subunit 6Family
H, S
IPR023184Ubiquinol-cytochrome C reductase hinge domainDomain
H, S
IPR036811Ubiquinol-cytochrome C reductase hinge domain superfamilyHomologous Superfamily
G, R
IPR004205Cytochrome b-c1 complex subunit 8Family
G, R
IPR036642Cytochrome b-c1 complex subunit 8 superfamilyHomologous Superfamily
F, Q
IPR003197Cytochrome b-c1 complex subunit 7Family
F, Q
IPR036544Cytochrome b-c1 complex subunit 7 superfamilyHomologous Superfamily
E, P
IPR036922Rieske [2Fe-2S] iron-sulphur domain superfamilyHomologous Superfamily
E, P
IPR014349Rieske iron-sulphur proteinFamily
E, P
IPR011070Globular protein, non-globular alpha/beta subunitHomologous Superfamily
E, P
IPR004192Cytochrome b-c1 complex subunit Rieske, transmembrane domainDomain
E, P
IPR015248Ubiquinol-cytochrome c reductase iron-sulphur subunit, N-terminalDomain
E, P
IPR017941Rieske [2Fe-2S] iron-sulphur domainDomain
E, P
IPR005805Rieske iron-sulphur protein, C-terminalDomain
E, P
IPR037008Cytochrome bc1 complex subunit Rieske, transmembrane domain superfamilyHomologous Superfamily
E, P
IPR006317Ubiquinol-cytochrome c reductase, iron-sulphur subunitDomain
D, O
IPR036909Cytochrome c-like domain superfamilyHomologous Superfamily
D, O
IPR002326Cytochrome c1Family
D, O
IPR009056Cytochrome c-like domainDomain
D, O
IPR021157Cytochrome c1, transmembrane anchor, C-terminalHomologous Superfamily
C, N
IPR036150Cytochrome b/b6, C-terminal domain superfamilyHomologous Superfamily
C, N
IPR027387Cytochrome b/b6-like domain superfamilyHomologous Superfamily
C, N
IPR048260Cytochrome b/b6, C-terminal domain, eukaryotic/bacterialDomain
C, N
IPR016174Di-haem cytochrome, transmembraneHomologous Superfamily
C, N
IPR005798Cytochrome b/b6, C-terminalDomain
C, N
IPR048259Cytochrome b/b6, N-terminal domain, eukaryotic/bacterialDomain
C, N
IPR030689Cytochrome bFamily
C, N
IPR005797Cytochrome b/b6, N-terminal domainDomain
B, M
IPR007863Peptidase M16, C-terminalDomain
B, M
IPR011765Peptidase M16, N-terminalDomain
B, M
IPR011249Metalloenzyme, LuxS/M16 peptidase-likeHomologous Superfamily
B, M
IPR050361Mitochondrial Processing Peptidase/Ubiquinol-cytochrome c Reductase ComplexFamily
B, M
IPR001431Peptidase M16, zinc-binding siteBinding Site
K, V
IPR029027Single alpha-helix domain superfamilyHomologous Superfamily
K, V
IPR015089Cytochrome b-c1 complex subunit 10Family
J, U
IPR008027Cytochrome b-c1 complex subunit 9Family
J, U
IPR036656Cytochrome b-c1 complex subunit 9 superfamilyHomologous Superfamily
A, L
IPR007863Peptidase M16, C-terminalDomain
A, L
IPR011765Peptidase M16, N-terminalDomain
A, L
IPR011249Metalloenzyme, LuxS/M16 peptidase-likeHomologous Superfamily
A, L
IPR050361Mitochondrial Processing Peptidase/Ubiquinol-cytochrome c Reductase ComplexFamily