9V7J | pdb_00009v7j

Phycobilisome core from Gloeobacter violaceus PCC 7421


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
BA [auth d]SCOP2B SuperfamilyGlobin-like 8064854 3000554 SCOP2B (2022-06-29)
BB [auth 4]SCOP2B SuperfamilyGlobin-like 8064854 3000554 SCOP2B (2022-06-29)
D [auth N]SCOP2B SuperfamilyGlobin-like 8064854 3000554 SCOP2B (2022-06-29)
DA [auth f]SCOP2B SuperfamilyGlobin-like 8064854 3000554 SCOP2B (2022-06-29)
DB [auth 6]SCOP2B SuperfamilyGlobin-like 8064854 3000554 SCOP2B (2022-06-29)
DC [auth AV]SCOP2B SuperfamilyGlobin-like 8064854 3000554 SCOP2B (2022-06-29)
F [auth P]SCOP2B SuperfamilyGlobin-like 8064854 3000554 SCOP2B (2022-06-29)
FA [auth h]SCOP2B SuperfamilyGlobin-like 8064854 3000554 SCOP2B (2022-06-29)
FB [auth 8]SCOP2B SuperfamilyGlobin-like 8064854 3000554 SCOP2B (2022-06-29)
FC [auth AX]SCOP2B SuperfamilyGlobin-like 8064854 3000554 SCOP2B (2022-06-29)
H [auth F]SCOP2B SuperfamilyGlobin-like 8064854 3000554 SCOP2B (2022-06-29)
HA [auth j]SCOP2B SuperfamilyGlobin-like 8064854 3000554 SCOP2B (2022-06-29)
HB [auth 0]SCOP2B SuperfamilyGlobin-like 8064854 3000554 SCOP2B (2022-06-29)
J [auth H]SCOP2B SuperfamilyGlobin-like 8064854 3000554 SCOP2B (2022-06-29)
JA [auth l]SCOP2B SuperfamilyGlobin-like 8064854 3000554 SCOP2B (2022-06-29)
L [auth J]SCOP2B SuperfamilyGlobin-like 8064854 3000554 SCOP2B (2022-06-29)
LA [auth n]SCOP2B SuperfamilyGlobin-like 8064854 3000554 SCOP2B (2022-06-29)
LB [auth AD]SCOP2B SuperfamilyGlobin-like 8064854 3000554 SCOP2B (2022-06-29)
N [auth L]SCOP2B SuperfamilyGlobin-like 8064854 3000554 SCOP2B (2022-06-29)
NA [auth p]SCOP2B SuperfamilyGlobin-like 8064854 3000554 SCOP2B (2022-06-29)
NB [auth AF]SCOP2B SuperfamilyGlobin-like 8064854 3000554 SCOP2B (2022-06-29)
OA [auth q]SCOP2B SuperfamilyGlobin-like 8064854 3000554 SCOP2B (2022-06-29)
PB [auth AH]SCOP2B SuperfamilyGlobin-like 8064854 3000554 SCOP2B (2022-06-29)
RB [auth AJ]SCOP2B SuperfamilyGlobin-like 8064854 3000554 SCOP2B (2022-06-29)
TA [auth v]SCOP2B SuperfamilyGlobin-like 8064854 3000554 SCOP2B (2022-06-29)
TB [auth AL]SCOP2B SuperfamilyGlobin-like 8064854 3000554 SCOP2B (2022-06-29)
V [auth X]SCOP2B SuperfamilyGlobin-like 8064854 3000554 SCOP2B (2022-06-29)
VA [auth x]SCOP2B SuperfamilyGlobin-like 8064854 3000554 SCOP2B (2022-06-29)
VB [auth AN]SCOP2B SuperfamilyGlobin-like 8064854 3000554 SCOP2B (2022-06-29)
XB [auth AP]SCOP2B SuperfamilyGlobin-like 8064854 3000554 SCOP2B (2022-06-29)
Z [auth b]SCOP2B SuperfamilyGlobin-like 8064854 3000554 SCOP2B (2022-06-29)
ZA [auth 2]SCOP2B SuperfamilyGlobin-like 8064854 3000554 SCOP2B (2022-06-29)
ZB [auth AR]SCOP2B SuperfamilyGlobin-like 8064854 3000554 SCOP2B (2022-06-29)
XA [auth z]SCOP2B SuperfamilyGlobin-like 8064854 3000554 SCOP2B (2022-06-29)
X [auth Z]SCOP2B SuperfamilyGlobin-like 8064854 3000554 SCOP2B (2022-06-29)
T [auth V]SCOP2B SuperfamilyGlobin-like 8064854 3000554 SCOP2B (2022-06-29)
R [auth T]SCOP2B SuperfamilyGlobin-like 8064854 3000554 SCOP2B (2022-06-29)
P [auth R]SCOP2B SuperfamilyGlobin-like 8064854 3000554 SCOP2B (2022-06-29)
JB [auth AB]SCOP2B SuperfamilyGlobin-like 8064854 3000554 SCOP2B (2022-06-29)
BC [auth AT]SCOP2B SuperfamilyGlobin-like 8064854 3000554 SCOP2B (2022-06-29)
AA [auth c]SCOP2B SuperfamilyGlobin-like 8064866 3000554 SCOP2B (2022-06-29)
AB [auth 3]SCOP2B SuperfamilyGlobin-like 8064866 3000554 SCOP2B (2022-06-29)
AC [auth AS]SCOP2B SuperfamilyGlobin-like 8064866 3000554 SCOP2B (2022-06-29)
C [auth M]SCOP2B SuperfamilyGlobin-like 8064866 3000554 SCOP2B (2022-06-29)
CA [auth e]SCOP2B SuperfamilyGlobin-like 8064866 3000554 SCOP2B (2022-06-29)
CB [auth 5]SCOP2B SuperfamilyGlobin-like 8064866 3000554 SCOP2B (2022-06-29)
CC [auth AU]SCOP2B SuperfamilyGlobin-like 8064866 3000554 SCOP2B (2022-06-29)
E [auth O]SCOP2B SuperfamilyGlobin-like 8064866 3000554 SCOP2B (2022-06-29)
EA [auth g]SCOP2B SuperfamilyGlobin-like 8064866 3000554 SCOP2B (2022-06-29)
EB [auth 7]SCOP2B SuperfamilyGlobin-like 8064866 3000554 SCOP2B (2022-06-29)
EC [auth AW]SCOP2B SuperfamilyGlobin-like 8064866 3000554 SCOP2B (2022-06-29)
GB [auth 9]SCOP2B SuperfamilyGlobin-like 8064866 3000554 SCOP2B (2022-06-29)
I [auth G]SCOP2B SuperfamilyGlobin-like 8064866 3000554 SCOP2B (2022-06-29)
IA [auth k]SCOP2B SuperfamilyGlobin-like 8064866 3000554 SCOP2B (2022-06-29)
IB [auth AA]SCOP2B SuperfamilyGlobin-like 8064866 3000554 SCOP2B (2022-06-29)
K [auth I]SCOP2B SuperfamilyGlobin-like 8064866 3000554 SCOP2B (2022-06-29)
KA [auth m]SCOP2B SuperfamilyGlobin-like 8064866 3000554 SCOP2B (2022-06-29)
KB [auth AC]SCOP2B SuperfamilyGlobin-like 8064866 3000554 SCOP2B (2022-06-29)
O [auth Q]SCOP2B SuperfamilyGlobin-like 8064866 3000554 SCOP2B (2022-06-29)
OB [auth AG]SCOP2B SuperfamilyGlobin-like 8064866 3000554 SCOP2B (2022-06-29)
QB [auth AI]SCOP2B SuperfamilyGlobin-like 8064866 3000554 SCOP2B (2022-06-29)
RA [auth t]SCOP2B SuperfamilyGlobin-like 8064866 3000554 SCOP2B (2022-06-29)
SB [auth AK]SCOP2B SuperfamilyGlobin-like 8064866 3000554 SCOP2B (2022-06-29)
U [auth W]SCOP2B SuperfamilyGlobin-like 8064866 3000554 SCOP2B (2022-06-29)
UA [auth w]SCOP2B SuperfamilyGlobin-like 8064866 3000554 SCOP2B (2022-06-29)
UB [auth AM]SCOP2B SuperfamilyGlobin-like 8064866 3000554 SCOP2B (2022-06-29)
W [auth Y]SCOP2B SuperfamilyGlobin-like 8064866 3000554 SCOP2B (2022-06-29)
WA [auth y]SCOP2B SuperfamilyGlobin-like 8064866 3000554 SCOP2B (2022-06-29)
WB [auth AO]SCOP2B SuperfamilyGlobin-like 8064866 3000554 SCOP2B (2022-06-29)
Y [auth a]SCOP2B SuperfamilyGlobin-like 8064866 3000554 SCOP2B (2022-06-29)
YB [auth AQ]SCOP2B SuperfamilyGlobin-like 8064866 3000554 SCOP2B (2022-06-29)
YA [auth 1]SCOP2B SuperfamilyGlobin-like 8064866 3000554 SCOP2B (2022-06-29)
S [auth U]SCOP2B SuperfamilyGlobin-like 8064866 3000554 SCOP2B (2022-06-29)
Q [auth S]SCOP2B SuperfamilyGlobin-like 8064866 3000554 SCOP2B (2022-06-29)
PA [auth r]SCOP2B SuperfamilyGlobin-like 8064866 3000554 SCOP2B (2022-06-29)
MB [auth AE]SCOP2B SuperfamilyGlobin-like 8064866 3000554 SCOP2B (2022-06-29)
MA [auth o]SCOP2B SuperfamilyGlobin-like 8064866 3000554 SCOP2B (2022-06-29)
M [auth K]SCOP2B SuperfamilyGlobin-like 8064866 3000554 SCOP2B (2022-06-29)
GA [auth i]SCOP2B SuperfamilyGlobin-like 8064866 3000554 SCOP2B (2022-06-29)
G [auth E]SCOP2B SuperfamilyGlobin-like 8064866 3000554 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
BA [auth d]RVPe9v7jd1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: RVPECOD (v294.2)
BB [auth 4]RVPe9v7j41 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: RVPECOD (v294.2)
D [auth N]RVPe9v7jN1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: RVPECOD (v294.2)
DA [auth f]RVPe9v7jf1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: RVPECOD (v294.2)
DB [auth 6]RVPe9v7j61 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: RVPECOD (v294.2)
DC [auth AV]RVPe9v7jAV1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: RVPECOD (v294.2)
F [auth P]RVPe9v7jP1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: RVPECOD (v294.2)
FA [auth h]RVPe9v7jh1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: RVPECOD (v294.2)
FB [auth 8]RVPe9v7j81 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: RVPECOD (v294.2)
FC [auth AX]RVPe9v7jAX1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: RVPECOD (v294.2)
H [auth F]RVPe9v7jF1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: RVPECOD (v294.2)
HA [auth j]RVPe9v7jj1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: RVPECOD (v294.2)
HB [auth 0]RVPe9v7j01 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: RVPECOD (v294.2)
J [auth H]RVPe9v7jH1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: RVPECOD (v294.2)
JA [auth l]RVPe9v7jl1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: RVPECOD (v294.2)
L [auth J]RVPe9v7jJ1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: RVPECOD (v294.2)
LA [auth n]RVPe9v7jn1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: RVPECOD (v294.2)
LB [auth AD]RVPe9v7jAD1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: RVPECOD (v294.2)
N [auth L]RVPe9v7jL1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: RVPECOD (v294.2)
NA [auth p]RVPe9v7jp1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: RVPECOD (v294.2)
NB [auth AF]RVPe9v7jAF1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: RVPECOD (v294.2)
OA [auth q]RVPe9v7jq1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: RVPECOD (v294.2)
PB [auth AH]RVPe9v7jAH1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: RVPECOD (v294.2)
RB [auth AJ]RVPe9v7jAJ1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: RVPECOD (v294.2)
TA [auth v]RVPe9v7jv1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: RVPECOD (v294.2)
TB [auth AL]RVPe9v7jAL1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: RVPECOD (v294.2)
V [auth X]RVPe9v7jX1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: RVPECOD (v294.2)
VA [auth x]RVPe9v7jx1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: RVPECOD (v294.2)
VB [auth AN]RVPe9v7jAN1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: RVPECOD (v294.2)
XB [auth AP]RVPe9v7jAP1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: RVPECOD (v294.2)
Z [auth b]RVPe9v7jb1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: RVPECOD (v294.2)
ZA [auth 2]RVPe9v7j21 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: RVPECOD (v294.2)
ZB [auth AR]RVPe9v7jAR1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: RVPECOD (v294.2)
XA [auth z]RVPe9v7jz1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: RVPECOD (v294.2)
X [auth Z]RVPe9v7jZ1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: RVPECOD (v294.2)
T [auth V]RVPe9v7jV1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: RVPECOD (v294.2)
R [auth T]RVPe9v7jT1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: RVPECOD (v294.2)
P [auth R]RVPe9v7jR1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: RVPECOD (v294.2)
JB [auth AB]RVPe9v7jAB1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: RVPECOD (v294.2)
BC [auth AT]RVPe9v7jAT1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: RVPECOD (v294.2)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF01383CpcD/allophycocyanin linker domain (CpcD)CpcD/allophycocyanin linker domainDomain
PF00502Phycobilisome protein (Phycobilisome)Phycobilisome proteinDomain
PF01383CpcD/allophycocyanin linker domain (CpcD)CpcD/allophycocyanin linker domainDomain
PF00502Phycobilisome protein (Phycobilisome)Phycobilisome proteinDomain
PF01383CpcD/allophycocyanin linker domain (CpcD)CpcD/allophycocyanin linker domainDomain
A,
B [auth C]
PF00502Phycobilisome protein (Phycobilisome)Phycobilisome proteinDomain
A,
B [auth C]
PF00427Phycobilisome Linker polypeptide (PBS_linker_poly)Phycobilisome Linker polypeptide- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Phycobilisome 7.8 kDa linker polypeptide, allophycocyanin-associated, core-
QA [auth s],
SA [auth u]
Phycobilisome core component-
Allophycocyanin beta subunit-
Allophycocyanin alpha subunit-
A,
B [auth C]
Phycobiliprotein ApcE

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR011064Allophycocyanin linker chainHomologous Superfamily
IPR011134Allophycocyanin linker proteinFamily
IPR008213CpcD-like domainDomain
QA [auth s],
SA [auth u]
IPR038719Phycobilisome, alpha/beta subunit superfamilyHomologous Superfamily
QA [auth s],
SA [auth u]
IPR009050Globin-like superfamilyHomologous Superfamily
QA [auth s],
SA [auth u]
IPR012128Phycobilisome, alpha/beta subunitFamily
IPR038719Phycobilisome, alpha/beta subunit superfamilyHomologous Superfamily
IPR006245Allophycocyanin, beta subunitFamily
IPR009050Globin-like superfamilyHomologous Superfamily
IPR012128Phycobilisome, alpha/beta subunitFamily
IPR038719Phycobilisome, alpha/beta subunit superfamilyHomologous Superfamily
IPR009050Globin-like superfamilyHomologous Superfamily
IPR012128Phycobilisome, alpha/beta subunitFamily
A,
B [auth C]
IPR038719Phycobilisome, alpha/beta subunit superfamilyHomologous Superfamily
A,
B [auth C]
IPR001297Phycobilisome linker domainDomain
A,
B [auth C]
IPR009050Globin-like superfamilyHomologous Superfamily
A,
B [auth C]
IPR038255Phycobilisome linker domain superfamilyHomologous Superfamily
A,
B [auth C]
IPR012128Phycobilisome, alpha/beta subunitFamily