Annotations: 9V7I

Phycobilisome rod R3 from Gloeobacter violaceus PCC 7421

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
Z [auth a]	SCOP2B Superfamily	Globin-like	8064884	3000554	SCOP2B (2022-06-29)
X	SCOP2B Superfamily	Globin-like	8064884	3000554	SCOP2B (2022-06-29)
V	SCOP2B Superfamily	Globin-like	8064884	3000554	SCOP2B (2022-06-29)
T	SCOP2B Superfamily	Globin-like	8064884	3000554	SCOP2B (2022-06-29)
R	SCOP2B Superfamily	Globin-like	8064884	3000554	SCOP2B (2022-06-29)
P	SCOP2B Superfamily	Globin-like	8064884	3000554	SCOP2B (2022-06-29)
N	SCOP2B Superfamily	Globin-like	8064884	3000554	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	Globin-like	8064884	3000554	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	Globin-like	8064884	3000554	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Globin-like	8064884	3000554	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Globin-like	8064884	3000554	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Globin-like	8064884	3000554	SCOP2B (2022-06-29)
Y	SCOP2B Superfamily	Globin-like	8064828	3000554	SCOP2B (2022-06-29)
W	SCOP2B Superfamily	Globin-like	8064828	3000554	SCOP2B (2022-06-29)
U	SCOP2B Superfamily	Globin-like	8064828	3000554	SCOP2B (2022-06-29)
S	SCOP2B Superfamily	Globin-like	8064828	3000554	SCOP2B (2022-06-29)
Q	SCOP2B Superfamily	Globin-like	8064828	3000554	SCOP2B (2022-06-29)
O	SCOP2B Superfamily	Globin-like	8064828	3000554	SCOP2B (2022-06-29)
L	SCOP2B Superfamily	Globin-like	8064828	3000554	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	Globin-like	8064828	3000554	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	Globin-like	8064828	3000554	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Globin-like	8064828	3000554	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Globin-like	8064828	3000554	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Globin-like	8064828	3000554	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
Z [auth a]	RVP	e9v7ia1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: RVP	ECOD (v294.2)
X	RVP	e9v7iX1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: RVP	ECOD (v294.2)
V	RVP	e9v7iV1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: RVP	ECOD (v294.2)
T	RVP	e9v7iT1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: RVP	ECOD (v294.2)
R	RVP	e9v7iR1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: RVP	ECOD (v294.2)
P	RVP	e9v7iP1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: RVP	ECOD (v294.2)
N	RVP	e9v7iN1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: RVP	ECOD (v294.2)
K	RVP	e9v7iK1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: RVP	ECOD (v294.2)
I	RVP	e9v7iI1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: RVP	ECOD (v294.2)
G	RVP	e9v7iG1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: RVP	ECOD (v294.2)
E	RVP	e9v7iE1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: RVP	ECOD (v294.2)
C	RVP	e9v7iC1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: RVP	ECOD (v294.2)
Y	RVP	e9v7iY1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: RVP	ECOD (v294.2)
W	RVP	e9v7iW1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: RVP	ECOD (v294.2)
U	RVP	e9v7iU1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: RVP	ECOD (v294.2)
S	RVP	e9v7iS1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: RVP	ECOD (v294.2)
Q	RVP	e9v7iQ1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: RVP	ECOD (v294.2)
O	RVP	e9v7iO1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: RVP	ECOD (v294.2)
L	RVP	e9v7iL1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: RVP	ECOD (v294.2)
J	RVP	e9v7iJ1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: RVP	ECOD (v294.2)
H	RVP	e9v7iH1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: RVP	ECOD (v294.2)
F	RVP	e9v7iF1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: RVP	ECOD (v294.2)
D	RVP	e9v7iD1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: RVP	ECOD (v294.2)
B	RVP	e9v7iB1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: RVP	ECOD (v294.2)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
AA [auth Z]	PF00427	Phycobilisome Linker polypeptide (PBS_linker_poly)	Phycobilisome Linker polypeptide	-	Family
C, E, G, I, K, C, E, G, I, K, N, P, R, T, V, X, Z [auth a]	PF00502	Phycobilisome protein (Phycobilisome)	Phycobilisome protein		Domain
B, D, F, H, J B, D, F, H, J, L, O, Q, S, U, W, Y	PF00502	Phycobilisome protein (Phycobilisome)	Phycobilisome protein		Domain
A	PF00502	Phycobilisome protein (Phycobilisome)	Phycobilisome protein		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
AA [auth Z]	Glr1262 protein	-	photosynthesis metabolic process cellular process	intracellular anatomical structure plasma membrane-derived chromatophore membrane membrane plasma membrane intracellular membraneless organelle plasma membrane-derived chromatophore thylakoid membrane intracellular organelle cell periphery cellular anatomical structure plasma membrane-derived thylakoid membrane organelle membraneless organelle plasma membrane region intracellular anatomical structure plasma membrane-derived chromatophore membrane membrane plasma membrane intracellular membraneless organelle plasma membrane-derived chromatophore thylakoid membrane intracellular organelle cell periphery cellular anatomical structure plasma membrane-derived thylakoid membrane organelle membraneless organelle plasma membrane region bacterial thylakoid cytoplasm photosynthetic membrane thylakoid protein-containing complex membrane protein complex light-harvesting complex phycobilisome
M	Phycobilisome rod linker polypeptide CpcC2	-	-	-
C, E, G, I, K, C, E, G, I, K, N, P, R, T, V, X, Z [auth a]	Phycocyanin alpha chain	-	photosynthesis metabolic process cellular process	intracellular anatomical structure plasma membrane-derived chromatophore membrane membrane plasma membrane intracellular membraneless organelle plasma membrane-derived chromatophore thylakoid membrane intracellular organelle cell periphery cellular anatomical structure plasma membrane-derived thylakoid membrane organelle membraneless organelle plasma membrane region intracellular anatomical structure plasma membrane-derived chromatophore membrane membrane plasma membrane intracellular membraneless organelle plasma membrane-derived chromatophore thylakoid membrane intracellular organelle cell periphery cellular anatomical structure plasma membrane-derived thylakoid membrane organelle membraneless organelle plasma membrane region bacterial thylakoid cytoplasm photosynthetic membrane thylakoid protein-containing complex membrane protein complex light-harvesting complex phycobilisome
B, D, F, H, J B, D, F, H, J, L, O, Q, S, U, W, Y	Phycocyanin beta chain	-	photosynthesis metabolic process cellular process	intracellular anatomical structure plasma membrane-derived chromatophore membrane membrane plasma membrane intracellular membraneless organelle plasma membrane-derived chromatophore thylakoid membrane intracellular organelle cell periphery cellular anatomical structure plasma membrane-derived thylakoid membrane organelle membraneless organelle plasma membrane region intracellular anatomical structure plasma membrane-derived chromatophore membrane membrane plasma membrane intracellular membraneless organelle plasma membrane-derived chromatophore thylakoid membrane intracellular organelle cell periphery cellular anatomical structure plasma membrane-derived thylakoid membrane organelle membraneless organelle plasma membrane region bacterial thylakoid cytoplasm photosynthetic membrane thylakoid protein-containing complex membrane protein complex light-harvesting complex phycobilisome
A	Phycobilisome rod linker polypeptide CpcC1	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
AA [auth Z]	IPR001297	Phycobilisome linker domain	Domain
AA [auth Z]	IPR038255	Phycobilisome linker domain superfamily	Homologous Superfamily
C, E, G, I, K, C, E, G, I, K, N, P, R, T, V, X, Z [auth a]	IPR038719	Phycobilisome, alpha/beta subunit superfamily	Homologous Superfamily
C, E, G, I, K, C, E, G, I, K, N, P, R, T, V, X, Z [auth a]	IPR009050	Globin-like superfamily	Homologous Superfamily
C, E, G, I, K, C, E, G, I, K, N, P, R, T, V, X, Z [auth a]	IPR012128	Phycobilisome, alpha/beta subunit	Family
B, D, F, H, J B, D, F, H, J, L, O, Q, S, U, W, Y	IPR038719	Phycobilisome, alpha/beta subunit superfamily	Homologous Superfamily
B, D, F, H, J B, D, F, H, J, L, O, Q, S, U, W, Y	IPR009050	Globin-like superfamily	Homologous Superfamily
B, D, F, H, J B, D, F, H, J, L, O, Q, S, U, W, Y	IPR012128	Phycobilisome, alpha/beta subunit	Family

9V7I | pdb_00009v7i

Phycobilisome rod R3 from Gloeobacter violaceus PCC 7421

External Resource: Annotation

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Domain Annotation: ECOD Classification ECOD Database Homepage

Protein Family Annotation Pfam Database Homepage

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

InterPro: Protein Family Classification InterPro Database Homepage