9UVL | pdb_00009uvl

Crystal structure of AGAP1-GDP complex

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
H	SCOP2B Superfamily	Ras-like P-loop GTPases	8102929	3002022	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Ras-like P-loop GTPases	8102929	3002022	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Ras-like P-loop GTPases	8102929	3002022	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Ras-like P-loop GTPases	8102929	3002022	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Ras-like P-loop GTPases	8102929	3002022	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Ras-like P-loop GTPases	8102929	3002022	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Ras-like P-loop GTPases	8102929	3002022	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Ras-like P-loop GTPases	8102929	3002022	SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H	PF00071	Ras family (Ras)	Ras family	Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See Pfam:PF00009 Pfam:PF00025, Pfam:PF00063. As regards Rab GTPases, these are important regulators of vesicle formation, motili ...	Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See Pfam:PF00009 Pfam:PF00025, Pfam:PF00063. As regards Rab GTPases, these are important regulators of vesicle formation, motility and fusion. They share a fold in common with all Ras GTPases: this is a six-stranded beta-sheet surrounded by five alpha-helices [1].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H	Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 1	GTPase regulator activity enzyme regulator activity enzyme activator activity GTPase activator activity molecular function activator activity nucleoside-triphosphatase regulator activity molecular function regulator activity cation binding transition metal ion binding zinc ion binding ion binding binding metal ion binding small molecule binding GTPase regulator activity enzyme regulator activity enzyme activator activity GTPase activator activity molecular function activator activity nucleoside-triphosphatase regulator activity molecular function regulator activity cation binding transition metal ion binding zinc ion binding ion binding binding metal ion binding small molecule binding phospholipid binding lipid binding guanyl nucleotide binding GTP binding nucleotide binding guanyl ribonucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding purine nucleotide binding anion binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding pyrophosphatase activity GTPase activity ribonucleoside triphosphate phosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity hydrolase activity, acting on acid anhydrides catalytic activity	localization establishment of protein localization protein transport transport macromolecule localization intracellular protein localization establishment of localization regulation of biological process regulation of cellular component organization regulation of cellular process biological regulation regulation of modification of synaptic structure cellular component organization regulation of synapse organization localization establishment of protein localization protein transport transport macromolecule localization intracellular protein localization establishment of localization regulation of biological process regulation of cellular component organization regulation of cellular process biological regulation regulation of modification of synaptic structure cellular component organization regulation of synapse organization cell junction organization cellular process regulation of synapse structure or activity regulation of modification of postsynaptic structure synapse organization cellular component organization or biogenesis regulation of biological quality modification of synaptic structure modification of postsynaptic structure	membrane-bounded organelle intracellular anatomical structure endosome synapse intracellular vesicle intracellular membrane-bounded organelle postsynaptic endosome endomembrane system intracellular organelle postsynapse cellular anatomical structure cytoplasmic vesicle organelle cell junction membrane-bounded organelle intracellular anatomical structure endosome synapse intracellular vesicle intracellular membrane-bounded organelle postsynaptic endosome endomembrane system intracellular organelle postsynapse cellular anatomical structure cytoplasmic vesicle organelle cell junction cytoplasm vesicle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H	IPR002110	Ankyrin repeat	Repeat
A, B, C, D, E A, B, C, D, E, F, G, H	IPR001806	Small GTPase	Family
A, B, C, D, E A, B, C, D, E, F, G, H	IPR001849	Pleckstrin homology domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H	IPR036770	Ankyrin repeat-containing domain superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H	IPR011993	PH-like domain superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H	IPR037278	ARFGAP/RecO-like, zinc finger superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H	IPR051282	Arf-GAP with GTPase, ANK repeat and PH domain-containing protein	Family
A, B, C, D, E A, B, C, D, E, F, G, H	IPR001164	Arf GTPase activating protein	Domain
A, B, C, D, E A, B, C, D, E, F, G, H	IPR038508	ArfGAP domain superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B, C, D, E A, B, C, D, E, F, G, H	: Q9UPQ3	astrocytic tumor Autistic Disorder Down syndrome invasive ductal breast carcinoma malignant glioma subependymal giant cell astrocytoma atypical teratoid rhabdoid tumor breast cancer exocrine pancreatic carcinoma large cell medulloblastoma malignant pancreatic neoplasm tuberculosis autism cutaneous lupus erythematosus glioblastoma astrocytic tumor Autistic Disorder Down syndrome invasive ductal breast carcinoma malignant glioma subependymal giant cell astrocytoma atypical teratoid rhabdoid tumor breast cancer exocrine pancreatic carcinoma large cell medulloblastoma malignant pancreatic neoplasm tuberculosis autism cutaneous lupus erythematosus glioblastoma malignant ependymoma primitive neuroectodermal tumor

RCSB PDB is hosted by

RCSB PDB is a member of

RCSB Partners
Nucleic Acid Knowledgebase

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.