9UG8 | pdb_00009ug8

Cryo-EM structure of CDK2/CyclinE bound to a lysine covalent inhibitor

External Resource: Annotation

Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations
Protein Modification Annotation

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth C]	Cyclin-dependent kinase 2	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding protein serine/threonine kinase activity cyclin-dependent protein serine/threonine kinase activity catalytic activity, acting on a protein kinase activity protein kinase activity cyclin-dependent protein kinase activity transferase activity catalytic activity phosphotransferase activity, alcohol group as acceptor transferase activity, transferring phosphorus-containing groups protein binding protein domain specific binding cyclin binding protein serine kinase activity cation binding magnesium ion binding metal ion binding	cellular response to stimulus telomere maintenance in response to DNA damage response to stimulus telomere organization chromosome organization primary metabolic process DNA metabolic process nucleic acid metabolic process telomere maintenance cellular component organization nucleobase-containing compound metabolic process organelle organization cellular response to stress DNA damage response response to stress cellular response to stimulus telomere maintenance in response to DNA damage response to stimulus telomere organization chromosome organization primary metabolic process DNA metabolic process nucleic acid metabolic process telomere maintenance cellular component organization nucleobase-containing compound metabolic process organelle organization cellular response to stress DNA damage response response to stress cellular process metabolic process cellular component organization or biogenesis macromolecule metabolic process microtubule organizing center organization microtubule cytoskeleton organization centrosome duplication centrosome cycle microtubule-based process cell cycle cytoskeleton organization cell cycle process regulation of cellular process positive regulation of DNA replication positive regulation of biological process regulation of primary metabolic process positive regulation of metabolic process positive regulation of macromolecule metabolic process regulation of nucleobase-containing compound metabolic process positive regulation of cellular process regulation of biological process biological regulation regulation of macromolecule metabolic process DNA replication positive regulation of DNA metabolic process regulation of metabolic process regulation of DNA metabolic process regulation of DNA replication regulation of cell cycle phase transition DNA damage checkpoint signaling signaling negative regulation of biological process negative regulation of cell cycle cell cycle phase transition regulation of cell cycle G1/S phase transition cell cycle G1/S phase transition intracellular signal transduction mitotic cell cycle negative regulation of mitotic cell cycle cell communication regulation of mitotic cell cycle mitotic DNA integrity checkpoint signaling mitotic DNA damage checkpoint signaling negative regulation of cellular process negative regulation of cell cycle phase transition signal transduction regulation of cell cycle negative regulation of G1/S transition of mitotic cell cycle mitotic G1/S transition checkpoint signaling negative regulation of mitotic cell cycle phase transition regulation of cell cycle process negative regulation of cell cycle G1/S phase transition DNA integrity checkpoint signaling negative regulation of cell cycle process cell cycle checkpoint signaling regulation of mitotic cell cycle phase transition mitotic cell cycle checkpoint signaling mitotic G1 DNA damage checkpoint signaling mitotic cell cycle process regulation of G1/S transition of mitotic cell cycle signal transduction in response to DNA damage G1/S transition of mitotic cell cycle mitotic cell cycle phase transition cellular senescence centriole assembly organelle assembly membraneless organelle assembly cellular component biogenesis cellular component assembly centriole replication macromolecule modification protein metabolic process post-translational protein modification protein modification process protein phosphorylation phosphorylation phosphate-containing compound metabolic process peptidyl-serine phosphorylation cell cycle G2/M phase transition G2/M transition of mitotic cell cycle cellular response to nitrogen compound response to oxygen-containing compound response to nitrogen compound cellular response to oxygen-containing compound cellular response to nitric oxide cellular response to chemical stimulus response to chemical response to nitric oxide cellular response to reactive nitrogen species regulation of chromatin organization regulation of cellular component organization heterochromatin organization chromatin organization regulation of heterochromatin organization regulation of localization protein localization to chromatin regulation of protein localization negative regulation of protein localization to chromatin localization protein localization to chromosome macromolecule localization protein localization to organelle intracellular protein localization regulation of protein localization to chromatin negative regulation of protein localization small GTPase-mediated signal transduction Ras protein signal transduction intracellular signaling cassette cell population proliferation positive regulation of cell population proliferation regulation of cell population proliferation catabolic process regulation of anaphase-promoting complex-dependent catabolic process proteasome-mediated ubiquitin-dependent protein catabolic process macromolecule catabolic process regulation of ubiquitin-dependent protein catabolic process modification-dependent macromolecule catabolic process regulation of protein metabolic process proteasomal protein catabolic process protein catabolic process regulation of catabolic process regulation of proteasomal ubiquitin-dependent protein catabolic process modification-dependent protein catabolic process regulation of proteasomal protein catabolic process anaphase-promoting complex-dependent catabolic process ubiquitin-dependent protein catabolic process regulation of protein catabolic process sexual reproduction reproductive process meiotic cell cycle positive regulation of organelle organization positive regulation of heterochromatin organization regulation of heterochromatin formation negative regulation of metabolic process regulation of chromosome organization regulation of organelle organization positive regulation of chromosome organization regulation of gene expression negative regulation of gene expression biosynthetic process negative regulation of macromolecule biosynthetic process negative regulation of gene expression, epigenetic regulation of macromolecule biosynthetic process positive regulation of cellular component organization positive regulation of heterochromatin formation chromatin remodeling positive regulation of chromatin organization negative regulation of macromolecule metabolic process regulation of biosynthetic process heterochromatin formation positive regulation of cellular component biogenesis epigenetic regulation of gene expression regulation of cellular component biogenesis gene expression macromolecule biosynthetic process negative regulation of biosynthetic process	protein kinase complex transferase complex, transferring phosphorus-containing groups protein-containing complex catalytic complex serine/threonine protein kinase complex cyclin-dependent protein kinase holoenzyme complex transferase complex membrane-bounded organelle intracellular organelle organelle envelope cellular anatomical structure intracellular anatomical structure organelle nuclear envelope protein kinase complex transferase complex, transferring phosphorus-containing groups protein-containing complex catalytic complex serine/threonine protein kinase complex cyclin-dependent protein kinase holoenzyme complex transferase complex membrane-bounded organelle intracellular organelle organelle envelope cellular anatomical structure intracellular anatomical structure organelle nuclear envelope nucleus intracellular membrane-bounded organelle endomembrane system cytoplasm cytosol transcription regulator complex sex chromosome membraneless organelle intracellular membraneless organelle chromosome X chromosome Cajal body membrane-enclosed lumen intracellular organelle lumen ribonucleoprotein granule nuclear body nucleoplasm organelle lumen supramolecular complex nuclear ribonucleoprotein granule nuclear lumen Y chromosome cyclin E2-CDK2 complex chromosome, telomeric region chromosomal region cyclin A2-CDK2 complex cilium plasma membrane bounded cell projection ciliary basal body cell projection microtubule organizing center cytoskeleton microtubule cytoskeleton condensed chromosome centrosome cyclin E1-CDK2 complex endosome intracellular vesicle cytoplasmic vesicle vesicle cyclin A1-CDK2 complex
B	G1/S-specific cyclin-E1	kinase activity transferase activity catalytic activity transferase activity, transferring phosphorus-containing groups protein binding binding kinase binding enzyme binding protein kinase binding enzyme regulator activity cyclin-dependent protein serine/threonine kinase regulator activity cyclin-dependent protein kinase regulator activity molecular function regulator activity protein kinase regulator activity kinase activity transferase activity catalytic activity transferase activity, transferring phosphorus-containing groups protein binding binding kinase binding enzyme binding protein kinase binding enzyme regulator activity cyclin-dependent protein serine/threonine kinase regulator activity cyclin-dependent protein kinase regulator activity molecular function regulator activity protein kinase regulator activity kinase regulator activity	mesenchymal stem cell proliferation regulation of stem cell proliferation regulation of biological process cell population proliferation regulation of cellular process positive regulation of cell population proliferation biological regulation positive regulation of biological process positive regulation of mesenchymal stem cell proliferation regulation of mesenchymal stem cell proliferation positive regulation of stem cell proliferation stem cell proliferation regulation of cell population proliferation cellular process mesenchymal stem cell proliferation regulation of stem cell proliferation regulation of biological process cell population proliferation regulation of cellular process positive regulation of cell population proliferation biological regulation positive regulation of biological process positive regulation of mesenchymal stem cell proliferation regulation of mesenchymal stem cell proliferation positive regulation of stem cell proliferation stem cell proliferation regulation of cell population proliferation cellular process positive regulation of cellular process protein phosphorylation phosphorylation macromolecule modification phosphate-containing compound metabolic process metabolic process primary metabolic process protein metabolic process macromolecule metabolic process protein modification process mitotic cell cycle process cell cycle phase transition cell cycle G1/S transition of mitotic cell cycle cell cycle G1/S phase transition mitotic cell cycle mitotic cell cycle phase transition cell cycle process regulation of cell cycle phase transition regulation of cell cycle G1/S phase transition regulation of mitotic cell cycle positive regulation of mitotic cell cycle phase transition positive regulation of cell cycle process positive regulation of mitotic cell cycle regulation of cell cycle positive regulation of G1/S transition of mitotic cell cycle regulation of cell cycle process positive regulation of cell cycle regulation of mitotic cell cycle phase transition positive regulation of cell cycle G1/S phase transition regulation of G1/S transition of mitotic cell cycle positive regulation of cell cycle phase transition	protein kinase complex transferase complex, transferring phosphorus-containing groups protein-containing complex catalytic complex serine/threonine protein kinase complex cyclin E1-CDK2 complex cyclin-dependent protein kinase holoenzyme complex transferase complex cellular anatomical structure intracellular anatomical structure cytoplasm cytosol intracellular organelle microtubule organizing center protein kinase complex transferase complex, transferring phosphorus-containing groups protein-containing complex catalytic complex serine/threonine protein kinase complex cyclin E1-CDK2 complex cyclin-dependent protein kinase holoenzyme complex transferase complex cellular anatomical structure intracellular anatomical structure cytoplasm cytosol intracellular organelle microtubule organizing center cytoskeleton organelle membraneless organelle intracellular membraneless organelle microtubule cytoskeleton membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen nucleoplasm organelle lumen nuclear lumen

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth C]	IPR000719	Protein kinase domain	Domain
A [auth C]	IPR050108	Cyclin-dependent kinase	Family
A [auth C]	IPR017441	Protein kinase, ATP binding site	Binding Site
A [auth C]	IPR011009	Protein kinase-like domain superfamily	Homologous Superfamily
A [auth C]	IPR008271	Serine/threonine-protein kinase, active site	Active Site
B	IPR004367	Cyclin, C-terminal domain	Domain
B	IPR048258	Cyclins, cyclin-box	Conserved Site
B	IPR006671	Cyclin, N-terminal	Domain
B	IPR036915	Cyclin-like superfamily	Homologous Superfamily
B	IPR039361	Cyclin	Family
B	IPR013763	Cyclin-like domain	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A [auth C]	: P24941	melanoma glioblastoma large cell medulloblastoma malignant glioma medulloblastoma osteosarcoma primitive neuroectodermal tumor adrenal cortex carcinoma vitiligo alopecia areata atypical teratoid rhabdoid tumor Childhood Diffuse Large B-Cell Lymphoma diffuse large B-cell lymphoma malignant colon neoplasm pilocytic astrocytoma melanoma glioblastoma large cell medulloblastoma malignant glioma medulloblastoma osteosarcoma primitive neuroectodermal tumor adrenal cortex carcinoma vitiligo alopecia areata atypical teratoid rhabdoid tumor Childhood Diffuse Large B-Cell Lymphoma diffuse large B-cell lymphoma malignant colon neoplasm pilocytic astrocytoma psoriasis asthma breast disease cleft lip eye disease Hashimoto thyroiditis hypothyroidism malignant ependymoma malignant mesothelioma polycystic ovary syndrome rheumatoid arthritis allergic rhinitis attention deficit hyperactivity disorder, inattentive type cancer cutaneous melanoma gastroesophageal reflux disease hematologic disease
B	: P24864	urinary bladder cancer breast carcinoma medulloblastoma ovarian cancer medullomyoblastoma with myogenic differentiation adult medulloblastoma cancer melanotic medulloblastoma breast cancer childhood medulloblastoma Neoplasm of uncertain or unknown behavior of ovary pancreatic intraductal papillary-mucinous neoplasm adrenal cortex carcinoma desmoplastic/nodular medulloblastoma hepatocellular carcinoma urinary bladder cancer breast carcinoma medulloblastoma ovarian cancer medullomyoblastoma with myogenic differentiation adult medulloblastoma cancer melanotic medulloblastoma breast cancer childhood medulloblastoma Neoplasm of uncertain or unknown behavior of ovary pancreatic intraductal papillary-mucinous neoplasm adrenal cortex carcinoma desmoplastic/nodular medulloblastoma hepatocellular carcinoma lung cancer non-small cell lung carcinoma ovarian carcinoma psoriasis urinary bladder neoplasm osteosarcoma ovarian neoplasm lung adenocarcinoma

Protein Modification Annotation

Modified Residue(s)
Chain	Residue(s)	Description
A [auth C]	A1EPW	Parent Component: LYS
A [auth C]	TPO	Parent Component: THR : AA0038 : O-phospho-L-threonine MOD:00047