9UB7 | pdb_00009ub7

Structure of glycosylphosphatidylinositol transamidase,state 1

External Resource: Annotation

Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
D	PF10510	Phosphatidylinositol-glycan biosynthesis class S protein (PIG-S)	Phosphatidylinositol-glycan biosynthesis class S protein	-	Family
C	PF01650	Peptidase C13 family (Peptidase_C13)	Peptidase C13 family	Members of this family are asparaginyl peptidases [1]. The blood fluke parasite Schistosoma mansoni has at least five Clan CA cysteine peptidases in its digestive tract including cathepsins B (2 isoforms), C, F and L. All have been recombinantly expr ...	Members of this family are asparaginyl peptidases [1]. The blood fluke parasite Schistosoma mansoni has at least five Clan CA cysteine peptidases in its digestive tract including cathepsins B (2 isoforms), C, F and L. All have been recombinantly expressed as active enzymes, albeit in various stages of activation [2]. In addition, a Clan CD peptidase, termed asparaginyl endopeptidase or 'legumain' has been identified. This has formerly been characterised as a 'haemoglobinase', but this term is probably incorrect [2]. Two cDNAs have been described for Schistosoma mansoni legumain; one encodes an active enzyme whereas the active site cysteine residue encoded by the second cDNA is substituted by an asparagine residue. Both forms have been recombinantly expressed [3].	Domain
B	PF06728	GPI transamidase subunit PIG-U (PIG-U)	GPI transamidase subunit PIG-U	-	Family
A	PF04114	Gaa1-like, GPI transamidase component (Gaa1)	Gaa1-like, GPI transamidase component	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
E	GPI transamidase component GPI16	-	fungal-type cell wall organization cellular component organization fungal-type cell wall organization or biogenesis cell wall organization or biogenesis cell wall organization cellular process cellular component organization or biogenesis external encapsulating structure organization glycolipid metabolic process glycerophospholipid metabolic process carbohydrate derivative metabolic process lipid biosynthetic process GPI anchor biosynthetic process GPI anchor metabolic process fungal-type cell wall organization cellular component organization fungal-type cell wall organization or biogenesis cell wall organization or biogenesis cell wall organization cellular process cellular component organization or biogenesis external encapsulating structure organization glycolipid metabolic process glycerophospholipid metabolic process carbohydrate derivative metabolic process lipid biosynthetic process GPI anchor biosynthetic process GPI anchor metabolic process protein maturation phospholipid metabolic process GPI anchored protein biosynthesis protein metabolic process phosphorus metabolic process carbohydrate derivative biosynthetic process glycerophospholipid biosynthetic process liposaccharide metabolic process primary metabolic process glycolipid biosynthetic process gene expression macromolecule biosynthetic process phospholipid biosynthetic process biosynthetic process glycerolipid biosynthetic process organophosphate metabolic process organophosphate biosynthetic process glycerolipid metabolic process metabolic process macromolecule metabolic process lipid metabolic process attachment of GPI anchor to protein	membrane-bounded organelle protein-containing complex intracellular anatomical structure caspase complex membrane protein complex GPI-anchor transamidase complex transferase complex endomembrane system endoplasmic reticulum subcompartment intracellular organelle cellular anatomical structure nuclear outer membrane-endoplasmic reticulum membrane network endopeptidase complex endoplasmic reticulum protein-containing complex membrane-bounded organelle protein-containing complex intracellular anatomical structure caspase complex membrane protein complex GPI-anchor transamidase complex transferase complex endomembrane system endoplasmic reticulum subcompartment intracellular organelle cellular anatomical structure nuclear outer membrane-endoplasmic reticulum membrane network endopeptidase complex endoplasmic reticulum protein-containing complex endoplasmic reticulum membrane catalytic complex organelle subcompartment peptidase complex membrane intracellular membrane-bounded organelle organelle endoplasmic reticulum cytoplasm organelle membrane
D	GPI transamidase component GPI17	-	fungal-type cell wall organization cellular component organization fungal-type cell wall organization or biogenesis cell wall organization or biogenesis cell wall organization cellular process cellular component organization or biogenesis external encapsulating structure organization glycolipid metabolic process glycerophospholipid metabolic process carbohydrate derivative metabolic process lipid biosynthetic process GPI anchor biosynthetic process GPI anchor metabolic process fungal-type cell wall organization cellular component organization fungal-type cell wall organization or biogenesis cell wall organization or biogenesis cell wall organization cellular process cellular component organization or biogenesis external encapsulating structure organization glycolipid metabolic process glycerophospholipid metabolic process carbohydrate derivative metabolic process lipid biosynthetic process GPI anchor biosynthetic process GPI anchor metabolic process protein maturation phospholipid metabolic process GPI anchored protein biosynthesis protein metabolic process phosphorus metabolic process carbohydrate derivative biosynthetic process glycerophospholipid biosynthetic process liposaccharide metabolic process primary metabolic process glycolipid biosynthetic process gene expression macromolecule biosynthetic process phospholipid biosynthetic process biosynthetic process glycerolipid biosynthetic process organophosphate metabolic process organophosphate biosynthetic process glycerolipid metabolic process metabolic process macromolecule metabolic process lipid metabolic process attachment of GPI anchor to protein	membrane-bounded organelle intracellular anatomical structure organelle inner membrane nuclear membrane membrane nucleus intracellular membrane-bounded organelle endomembrane system intracellular organelle organelle envelope cellular anatomical structure organelle nuclear inner membrane nuclear envelope membrane-bounded organelle intracellular anatomical structure organelle inner membrane nuclear membrane membrane nucleus intracellular membrane-bounded organelle endomembrane system intracellular organelle organelle envelope cellular anatomical structure organelle nuclear inner membrane nuclear envelope organelle membrane protein-containing complex caspase complex membrane protein complex GPI-anchor transamidase complex transferase complex endoplasmic reticulum subcompartment nuclear outer membrane-endoplasmic reticulum membrane network endopeptidase complex endoplasmic reticulum protein-containing complex endoplasmic reticulum membrane catalytic complex organelle subcompartment peptidase complex endoplasmic reticulum cytoplasm
C	GPI-anchor transamidase	cysteine-type peptidase activity transferase activity, transferring nitrogenous groups peptidase activity catalytic activity, acting on a protein cysteine-type endopeptidase activity hydrolase activity transferase activity catalytic activity GPI-anchor transamidase activity endopeptidase activity	fungal-type cell wall organization cellular component organization fungal-type cell wall organization or biogenesis cell wall organization or biogenesis cell wall organization cellular process cellular component organization or biogenesis external encapsulating structure organization proteolysis metabolic process primary metabolic process protein metabolic process macromolecule metabolic process glycolipid metabolic process fungal-type cell wall organization cellular component organization fungal-type cell wall organization or biogenesis cell wall organization or biogenesis cell wall organization cellular process cellular component organization or biogenesis external encapsulating structure organization proteolysis metabolic process primary metabolic process protein metabolic process macromolecule metabolic process glycolipid metabolic process glycerophospholipid metabolic process carbohydrate derivative metabolic process lipid biosynthetic process GPI anchor biosynthetic process GPI anchor metabolic process protein maturation phospholipid metabolic process GPI anchored protein biosynthesis phosphorus metabolic process carbohydrate derivative biosynthetic process glycerophospholipid biosynthetic process liposaccharide metabolic process glycolipid biosynthetic process gene expression macromolecule biosynthetic process phospholipid biosynthetic process biosynthetic process glycerolipid biosynthetic process organophosphate metabolic process organophosphate biosynthetic process glycerolipid metabolic process lipid metabolic process attachment of GPI anchor to protein	membrane-bounded organelle protein-containing complex intracellular anatomical structure caspase complex membrane protein complex GPI-anchor transamidase complex transferase complex endomembrane system endoplasmic reticulum subcompartment intracellular organelle cellular anatomical structure nuclear outer membrane-endoplasmic reticulum membrane network endopeptidase complex endoplasmic reticulum protein-containing complex membrane-bounded organelle protein-containing complex intracellular anatomical structure caspase complex membrane protein complex GPI-anchor transamidase complex transferase complex endomembrane system endoplasmic reticulum subcompartment intracellular organelle cellular anatomical structure nuclear outer membrane-endoplasmic reticulum membrane network endopeptidase complex endoplasmic reticulum protein-containing complex endoplasmic reticulum membrane catalytic complex organelle subcompartment peptidase complex membrane intracellular membrane-bounded organelle organelle endoplasmic reticulum cytoplasm organelle membrane
B	GPI transamidase component GAB1	cysteine-type peptidase activity transferase activity, transferring nitrogenous groups peptidase activity catalytic activity, acting on a protein cysteine-type endopeptidase activity hydrolase activity transferase activity catalytic activity GPI-anchor transamidase activity endopeptidase activity	fungal-type cell wall organization cellular component organization fungal-type cell wall organization or biogenesis cell wall organization or biogenesis cell wall organization cellular process cellular component organization or biogenesis external encapsulating structure organization glycolipid metabolic process glycerophospholipid metabolic process carbohydrate derivative metabolic process lipid biosynthetic process GPI anchor biosynthetic process GPI anchor metabolic process fungal-type cell wall organization cellular component organization fungal-type cell wall organization or biogenesis cell wall organization or biogenesis cell wall organization cellular process cellular component organization or biogenesis external encapsulating structure organization glycolipid metabolic process glycerophospholipid metabolic process carbohydrate derivative metabolic process lipid biosynthetic process GPI anchor biosynthetic process GPI anchor metabolic process protein maturation phospholipid metabolic process GPI anchored protein biosynthesis protein metabolic process phosphorus metabolic process carbohydrate derivative biosynthetic process glycerophospholipid biosynthetic process liposaccharide metabolic process primary metabolic process glycolipid biosynthetic process gene expression macromolecule biosynthetic process phospholipid biosynthetic process biosynthetic process glycerolipid biosynthetic process organophosphate metabolic process organophosphate biosynthetic process glycerolipid metabolic process metabolic process macromolecule metabolic process lipid metabolic process cell division attachment of GPI anchor to protein	membrane-bounded organelle protein-containing complex intracellular anatomical structure caspase complex membrane protein complex GPI-anchor transamidase complex transferase complex endomembrane system endoplasmic reticulum subcompartment intracellular organelle cellular anatomical structure nuclear outer membrane-endoplasmic reticulum membrane network endopeptidase complex endoplasmic reticulum protein-containing complex membrane-bounded organelle protein-containing complex intracellular anatomical structure caspase complex membrane protein complex GPI-anchor transamidase complex transferase complex endomembrane system endoplasmic reticulum subcompartment intracellular organelle cellular anatomical structure nuclear outer membrane-endoplasmic reticulum membrane network endopeptidase complex endoplasmic reticulum protein-containing complex endoplasmic reticulum membrane catalytic complex organelle subcompartment peptidase complex membrane intracellular membrane-bounded organelle organelle endoplasmic reticulum cytoplasm organelle membrane
A	GPI transamidase component GAA1	-	fungal-type cell wall organization cellular component organization fungal-type cell wall organization or biogenesis cell wall organization or biogenesis cell wall organization cellular process cellular component organization or biogenesis external encapsulating structure organization glycolipid metabolic process glycerophospholipid metabolic process carbohydrate derivative metabolic process lipid biosynthetic process GPI anchor biosynthetic process GPI anchor metabolic process fungal-type cell wall organization cellular component organization fungal-type cell wall organization or biogenesis cell wall organization or biogenesis cell wall organization cellular process cellular component organization or biogenesis external encapsulating structure organization glycolipid metabolic process glycerophospholipid metabolic process carbohydrate derivative metabolic process lipid biosynthetic process GPI anchor biosynthetic process GPI anchor metabolic process protein maturation phospholipid metabolic process GPI anchored protein biosynthesis protein metabolic process phosphorus metabolic process carbohydrate derivative biosynthetic process glycerophospholipid biosynthetic process liposaccharide metabolic process primary metabolic process glycolipid biosynthetic process gene expression macromolecule biosynthetic process phospholipid biosynthetic process biosynthetic process glycerolipid biosynthetic process organophosphate metabolic process organophosphate biosynthetic process glycerolipid metabolic process metabolic process macromolecule metabolic process lipid metabolic process attachment of GPI anchor to protein	membrane-bounded organelle protein-containing complex intracellular anatomical structure caspase complex membrane protein complex GPI-anchor transamidase complex transferase complex endomembrane system endoplasmic reticulum subcompartment intracellular organelle cellular anatomical structure nuclear outer membrane-endoplasmic reticulum membrane network endopeptidase complex endoplasmic reticulum protein-containing complex membrane-bounded organelle protein-containing complex intracellular anatomical structure caspase complex membrane protein complex GPI-anchor transamidase complex transferase complex endomembrane system endoplasmic reticulum subcompartment intracellular organelle cellular anatomical structure nuclear outer membrane-endoplasmic reticulum membrane network endopeptidase complex endoplasmic reticulum protein-containing complex endoplasmic reticulum membrane catalytic complex organelle subcompartment peptidase complex membrane intracellular membrane-bounded organelle organelle endoplasmic reticulum cytoplasm organelle membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
E	IPR007245	GPI transamidase component PIG-T	Family
D	IPR019540	Phosphatidylinositol-glycan biosynthesis class S protein	Family
C	IPR028361	GPI-anchor transamidase	Family
C	IPR001096	Peptidase C13, legumain	Family
B	IPR009600	GPI transamidase subunit PIG-U	Family
A	IPR007246	GPI transamidase component Gaa1	Family

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.