Annotations: 9TSZ

Human condensin II bound to ADP-BeF3 in autoinhibited conformation

External Resource: Annotation

Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF02463	RecF/RecN/SMC N terminal domain (SMC_N)	RecF/RecN/SMC N terminal domain	This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. Th ...	This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics [1]. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.	Domain
B [auth D]	PF12717	non-SMC mitotic condensation complex subunit 1 (Cnd1)	non-SMC mitotic condensation complex subunit 1	-	Repeat
D [auth G]	PF12422	Condensin II non structural maintenance of chromosomes subunit (Condensin2nSMC)	Condensin II non structural maintenance of chromosomes subunit	-	Family
E [auth B]	PF02463	RecF/RecN/SMC N terminal domain (SMC_N)	RecF/RecN/SMC N terminal domain	This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. Th ...	This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics [1]. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Structural maintenance of chromosomes protein 2	chromatin binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding chromatin binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding pyrophosphatase activity ATP hydrolysis activity ribonucleoside triphosphate phosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity hydrolase activity, acting on acid anhydrides catalytic activity ATP-dependent activity DNA binding single-stranded DNA binding nucleic acid binding	regulation of chromosome segregation regulation of biological process regulation of cellular process regulation of cell cycle process biological regulation positive regulation of biological process positive regulation of cell cycle chromosome separation positive regulation of chromosome separation positive regulation of cell cycle process cellular process regulation of chromosome separation cell cycle regulation of cell cycle regulation of chromosome segregation regulation of biological process regulation of cellular process regulation of cell cycle process biological regulation positive regulation of biological process positive regulation of cell cycle chromosome separation positive regulation of chromosome separation positive regulation of cell cycle process cellular process regulation of chromosome separation cell cycle regulation of cell cycle chromosome segregation positive regulation of cellular process cell cycle process developmental process multicellular organismal process cellular developmental process hemopoiesis B cell activation cell activation cell development mononuclear cell differentiation lymphocyte differentiation lymphocyte activation leukocyte activation B cell differentiation cell differentiation immune system process anatomical structure development leukocyte differentiation immune system development immunoglobulin production somatic cell DNA recombination nucleobase-containing compound metabolic process multicellular organism development somatic recombination of immunoglobulin gene segments V(D)J recombination immunoglobulin heavy chain V-D-J recombination somatic diversification of immune receptors system development production of molecular mediator of immune response DNA recombination primary metabolic process DNA metabolic process gene expression macromolecule biosynthetic process nucleic acid metabolic process somatic diversification of immunoglobulins immunoglobulin V(D)J recombination biosynthetic process somatic diversification of immune receptors via germline recombination within a single locus metabolic process macromolecule metabolic process animal gross anatomical part developmental process mitotic nuclear division mitotic chromosome condensation organelle fission chromosome organization sister chromatid segregation mitotic cell cycle cellular component organization organelle organization nuclear division mitotic cell cycle process chromosome condensation mitotic sister chromatid segregation nuclear chromosome segregation cellular component organization or biogenesis positive regulation of chromosome segregation positive regulation of organelle organization regulation of cellular component organization positive regulation of cellular component organization regulation of chromosome condensation regulation of chromosome organization regulation of organelle organization positive regulation of chromosome organization positive regulation of chromosome condensation head development forebrain development animal organ development brain development nervous system development pallium development cerebral cortex development central nervous system development telencephalon development	membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membraneless organelle intracellular membrane-bounded organelle nucleolus intracellular organelle lumen intracellular organelle cellular anatomical structure organelle lumen organelle membraneless organelle nuclear lumen membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membraneless organelle intracellular membrane-bounded organelle nucleolus intracellular organelle lumen intracellular organelle cellular anatomical structure organelle lumen organelle membraneless organelle nuclear lumen chromosome condensed chromosome condensed nuclear chromosome nuclear chromosome extracellular exosome extracellular vesicle extracellular organelle extracellular region vesicle extracellular membrane-bounded organelle cytoplasm cytosol protein-containing complex condensin complex nucleoplasm chromatin
B [auth D]	Condensin-2 complex subunit D3	protein binding binding histone binding histone reader activity histone H4 reader activity chromatin-protein adaptor activity protein-macromolecule adaptor activity molecular adaptor activity histone H4K20me1 reader activity	mitotic nuclear division mitotic chromosome condensation organelle fission chromosome organization sister chromatid segregation mitotic cell cycle cellular component organization organelle organization nuclear division mitotic cell cycle process chromosome condensation mitotic sister chromatid segregation nuclear chromosome segregation cellular process mitotic nuclear division mitotic chromosome condensation organelle fission chromosome organization sister chromatid segregation mitotic cell cycle cellular component organization organelle organization nuclear division mitotic cell cycle process chromosome condensation mitotic sister chromatid segregation nuclear chromosome segregation cellular process cell cycle cellular component organization or biogenesis chromosome segregation cell cycle process	cellular anatomical structure membrane intracellular anatomical structure intracellular membraneless organelle chromosome chromosomal region intracellular organelle organelle membraneless organelle chromosome, centromeric region condensed chromosome, centromeric region condensed chromosome protein-containing complex condensin complex cellular anatomical structure membrane intracellular anatomical structure intracellular membraneless organelle chromosome chromosomal region intracellular organelle organelle membraneless organelle chromosome, centromeric region condensed chromosome, centromeric region condensed chromosome protein-containing complex condensin complex membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen nucleoplasm organelle lumen nuclear lumen pericentric heterochromatin chromatin heterochromatin
C [auth H]	Condensin-2 complex subunit H2	chromatin binding binding	mitotic nuclear division organelle fission chromosome organization sister chromatid segregation mitotic cell cycle cellular component organization organelle organization nuclear division mitotic cell cycle process chromosome separation mitotic sister chromatid segregation nuclear chromosome segregation cellular process mitotic sister chromatid separation mitotic nuclear division organelle fission chromosome organization sister chromatid segregation mitotic cell cycle cellular component organization organelle organization nuclear division mitotic cell cycle process chromosome separation mitotic sister chromatid segregation nuclear chromosome segregation cellular process mitotic sister chromatid separation cell cycle cellular component organization or biogenesis chromosome segregation cell cycle process mitotic chromosome condensation chromosome condensation meiotic chromosome condensation sexual reproduction reproductive process meiotic cell cycle meiotic cell cycle process chromosome organization involved in meiotic cell cycle	cellular anatomical structure membrane intracellular organelle intracellular anatomical structure organelle membraneless organelle intracellular membraneless organelle chromosome protein-containing complex condensin complex membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membrane-bounded organelle cellular anatomical structure membrane intracellular organelle intracellular anatomical structure organelle membraneless organelle intracellular membraneless organelle chromosome protein-containing complex condensin complex membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen nucleoplasm organelle lumen nuclear lumen
D [auth G]	Condensin-2 complex subunit G2	histone reader activity histone H4 reader activity chromatin-protein adaptor activity protein-macromolecule adaptor activity molecular adaptor activity histone H4K20me1 reader activity transcription factor binding protein binding binding bHLH transcription factor binding DNA-binding transcription factor binding	regulation of chromosome segregation regulation of biological process regulation of cellular process regulation of cell cycle process biological regulation positive regulation of biological process positive regulation of cell cycle chromosome separation positive regulation of chromosome separation positive regulation of cell cycle process cellular process regulation of chromosome separation cell cycle regulation of cell cycle regulation of chromosome segregation regulation of biological process regulation of cellular process regulation of cell cycle process biological regulation positive regulation of biological process positive regulation of cell cycle chromosome separation positive regulation of chromosome separation positive regulation of cell cycle process cellular process regulation of chromosome separation cell cycle regulation of cell cycle chromosome segregation positive regulation of cellular process cell cycle process developmental process multicellular organismal process head development forebrain development animal organ development brain development nervous system development pallium development cerebral cortex development multicellular organism development central nervous system development anatomical structure development telencephalon development animal gross anatomical part developmental process system development mitotic nuclear division mitotic chromosome condensation organelle fission chromosome organization sister chromatid segregation mitotic cell cycle cellular component organization organelle organization nuclear division mitotic cell cycle process chromosome condensation mitotic sister chromatid segregation nuclear chromosome segregation cellular component organization or biogenesis positive regulation of chromosome segregation	cellular anatomical structure membrane membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membraneless organelle intracellular membrane-bounded organelle intracellular organelle lumen nuclear speck ribonucleoprotein granule intracellular organelle nuclear body nucleoplasm cellular anatomical structure membrane membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membraneless organelle intracellular membrane-bounded organelle intracellular organelle lumen nuclear speck ribonucleoprotein granule intracellular organelle nuclear body nucleoplasm organelle lumen organelle membraneless organelle supramolecular complex nuclear ribonucleoprotein granule nuclear lumen condensed nuclear chromosome nuclear chromosome chromosome condensed chromosome protein-containing complex condensin complex
E [auth B]	Structural maintenance of chromosomes protein 4	chromatin binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding chromatin binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding pyrophosphatase activity ATP hydrolysis activity ribonucleoside triphosphate phosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity hydrolase activity, acting on acid anhydrides catalytic activity ATP-dependent activity DNA binding single-stranded DNA binding nucleic acid binding	regulation of chromosome segregation regulation of biological process regulation of cellular process regulation of cell cycle process biological regulation positive regulation of biological process positive regulation of cell cycle chromosome separation positive regulation of chromosome separation positive regulation of cell cycle process cellular process regulation of chromosome separation cell cycle regulation of cell cycle regulation of chromosome segregation regulation of biological process regulation of cellular process regulation of cell cycle process biological regulation positive regulation of biological process positive regulation of cell cycle chromosome separation positive regulation of chromosome separation positive regulation of cell cycle process cellular process regulation of chromosome separation cell cycle regulation of cell cycle chromosome segregation positive regulation of cellular process cell cycle process developmental process multicellular organismal process cellular developmental process hemopoiesis B cell activation cell activation cell development mononuclear cell differentiation lymphocyte differentiation lymphocyte activation leukocyte activation B cell differentiation cell differentiation immune system process anatomical structure development leukocyte differentiation immune system development immunoglobulin production somatic cell DNA recombination nucleobase-containing compound metabolic process multicellular organism development somatic recombination of immunoglobulin gene segments V(D)J recombination immunoglobulin heavy chain V-D-J recombination somatic diversification of immune receptors system development production of molecular mediator of immune response DNA recombination primary metabolic process DNA metabolic process gene expression macromolecule biosynthetic process nucleic acid metabolic process somatic diversification of immunoglobulins immunoglobulin V(D)J recombination biosynthetic process somatic diversification of immune receptors via germline recombination within a single locus metabolic process macromolecule metabolic process animal gross anatomical part developmental process mitotic nuclear division mitotic chromosome condensation organelle fission chromosome organization sister chromatid segregation mitotic cell cycle cellular component organization organelle organization nuclear division mitotic cell cycle process chromosome condensation mitotic sister chromatid segregation nuclear chromosome segregation cellular component organization or biogenesis positive regulation of chromosome segregation positive regulation of organelle organization regulation of cellular component organization positive regulation of cellular component organization regulation of chromosome condensation regulation of chromosome organization regulation of organelle organization positive regulation of chromosome organization positive regulation of chromosome condensation head development forebrain development animal organ development brain development nervous system development pallium development cerebral cortex development central nervous system development telencephalon development meiotic chromosome segregation sexual reproduction reproductive process meiotic cell cycle meiotic cell cycle process meiotic nuclear division	membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membraneless organelle intracellular membrane-bounded organelle intracellular organelle lumen nuclear speck ribonucleoprotein granule intracellular organelle nuclear body cellular anatomical structure nucleoplasm organelle lumen membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membraneless organelle intracellular membrane-bounded organelle intracellular organelle lumen nuclear speck ribonucleoprotein granule intracellular organelle nuclear body cellular anatomical structure nucleoplasm organelle lumen organelle membraneless organelle supramolecular complex nuclear ribonucleoprotein granule nuclear lumen condensed nuclear chromosome nuclear chromosome chromosome condensed chromosome cytoplasm cytosol chromosome, centromeric region chromosomal region protein-containing complex condensin complex

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR027120	Smc2, ATP-binding cassette domain	Domain
A	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily
A	IPR010935	SMCs flexible hinge	Domain
A	IPR036277	SMCs flexible hinge superfamily	Homologous Superfamily
A	IPR003395	RecF/RecN/SMC, N-terminal	Domain
A	IPR024704	Structural maintenance of chromosomes protein	Family
B [auth D]	IPR016024	Armadillo-type fold	Homologous Superfamily
B [auth D]	IPR026971	Condensin subunit 1/Condensin-2 complex subunit D3	Family
B [auth D]	IPR012371	Condensin-2 complex subunit D3	Family
B [auth D]	IPR032682	Condensin complex subunit 1, C-terminal	Domain
B [auth D]	IPR011989	Armadillo-like helical	Homologous Superfamily
B [auth D]	IPR060186	Condensin-2 complex subunit D3-like, N-terminal domain	Domain
C [auth H]	IPR031739	Condensin-2 complex subunit H2	Family
C [auth H]	IPR031719	Condensin II complex subunit H2, middle domain	Domain
C [auth H]	IPR009378	Condensin II complex subunit H2, N-terminal	Domain
C [auth H]	IPR031737	Condensin-2 complex subunit H2, C-terminal	Domain
D [auth G]	IPR016024	Armadillo-type fold	Homologous Superfamily
D [auth G]	IPR011989	Armadillo-like helical	Homologous Superfamily
D [auth G]	IPR024741	Condensin-2 complex subunit G2	Family
E [auth B]	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily
E [auth B]	IPR010935	SMCs flexible hinge	Domain
E [auth B]	IPR036277	SMCs flexible hinge superfamily	Homologous Superfamily
E [auth B]	IPR003395	RecF/RecN/SMC, N-terminal	Domain
E [auth B]	IPR024704	Structural maintenance of chromosomes protein	Family

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A	: O95347	Liver Cirrhosis, Experimental ovarian cancer peripheral nervous system disease primitive neuroectodermal tumor skin basal cell carcinoma adrenal cortex carcinoma breast carcinoma invasive ductal breast carcinoma lung benign neoplasm malignant ependymoma medulloblastoma non-small cell lung carcinoma pancreatic intraductal papillary-mucinous carcinoma peripheral neuropathy progressive supranuclear palsy Liver Cirrhosis, Experimental ovarian cancer peripheral nervous system disease primitive neuroectodermal tumor skin basal cell carcinoma adrenal cortex carcinoma breast carcinoma invasive ductal breast carcinoma lung benign neoplasm malignant ependymoma medulloblastoma non-small cell lung carcinoma pancreatic intraductal papillary-mucinous carcinoma peripheral neuropathy progressive supranuclear palsy atypical teratoid rhabdoid tumor glioblastoma large cell medulloblastoma lung cancer malignant glioma nasopharyngeal carcinoma osteosarcoma pancreatic intraductal papillary-mucinous neoplasm Pick disease psoriasis breast cancer head and neck cancer neurofibromatosis type 1
B [auth D]	: P42695	microcephaly atypical teratoid rhabdoid tumor lung adenocarcinoma malignant mesothelioma microcephaly 22, primary, autosomal recessive primitive neuroectodermal tumor glioblastoma lung cancer medulloblastoma non-small cell lung carcinoma large cell medulloblastoma malignant colon neoplasm ovarian cancer
C [auth H]	: Q6IBW4	B-cell chronic lymphocytic leukemia X-linked mixed deafness with perilymphatic gusher diffuse large B-cell lymphoma osteosarcoma
D [auth G]	: Q86XI2	adrenal cortex carcinoma endometriosis invasive ductal breast carcinoma malignant colon neoplasm medulloblastoma pancreatic intraductal papillary-mucinous carcinoma psoriasis atypical teratoid rhabdoid tumor gastric carcinoma large cell medulloblastoma malignant ependymoma non-small cell lung carcinoma pancreatic intraductal papillary-mucinous neoplasm testicular germ cell tumor breast cancer adrenal cortex carcinoma endometriosis invasive ductal breast carcinoma malignant colon neoplasm medulloblastoma pancreatic intraductal papillary-mucinous carcinoma psoriasis atypical teratoid rhabdoid tumor gastric carcinoma large cell medulloblastoma malignant ependymoma non-small cell lung carcinoma pancreatic intraductal papillary-mucinous neoplasm testicular germ cell tumor breast cancer glioblastoma lung cancer malignant glioma osteosarcoma primitive neuroectodermal tumor
E [auth B]	: Q9NTJ3	oligodendroglioma pancreatic intraductal papillary-mucinous neoplasm progressive supranuclear palsy adrenal cortex carcinoma atypical teratoid rhabdoid tumor ductal breast carcinoma in situ invasive ductal breast carcinoma lung cancer malignant glioma nasopharyngeal carcinoma ovarian cancer pilocytic astrocytoma Sjogren syndrome astrocytic tumor breast cancer oligodendroglioma pancreatic intraductal papillary-mucinous neoplasm progressive supranuclear palsy adrenal cortex carcinoma atypical teratoid rhabdoid tumor ductal breast carcinoma in situ invasive ductal breast carcinoma lung cancer malignant glioma nasopharyngeal carcinoma ovarian cancer pilocytic astrocytoma Sjogren syndrome astrocytic tumor breast cancer glioblastoma large cell medulloblastoma lymphoplasmacytic lymphoma malignant mesothelioma non-small cell lung carcinoma pancreatic intraductal papillary-mucinous carcinoma primitive neuroectodermal tumor atopic eczema breast carcinoma IgA glomerulonephritis lung adenocarcinoma malignant ependymoma medulloblastoma