9TQD | pdb_00009tqd

CD163 bound to haemoglobin

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
G	SCOP2B Superfamily	Globin-like	8039838	3000554	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Globin-like	8039838	3000554	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Globin-like	8039836	3000554	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Globin-like	8039836	3000554	SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
E, G	PF00042	Globin (Globin)	Globin		Domain
D, F	PF00042	Globin (Globin)	Globin		Domain
A, B, C	PF00530	Scavenger receptor cysteine-rich domain (SRCR)	Scavenger receptor cysteine-rich domain	These domains are disulphide rich extracellular domains. These domains are found in several extracellular receptors and may be involved in protein-protein interactions.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
E, G	Spinorphin	hemoglobin binding protein binding binding oxygen binding small molecule binding hemoglobin alpha binding oxygen carrier activity molecular carrier activity tetrapyrrole binding heme binding cation binding ion binding metal ion binding	regulation of biosynthetic process regulation of nitric oxide biosynthetic process regulation of biological process regulation of cellular process biological regulation positive regulation of biological process reactive nitrogen species metabolic process nitric oxide metabolic process positive regulation of metabolic process nitric oxide biosynthetic process biosynthetic process positive regulation of biosynthetic process cellular process metabolic process regulation of biosynthetic process regulation of nitric oxide biosynthetic process regulation of biological process regulation of cellular process biological regulation positive regulation of biological process reactive nitrogen species metabolic process nitric oxide metabolic process positive regulation of metabolic process nitric oxide biosynthetic process biosynthetic process positive regulation of biosynthetic process cellular process metabolic process regulation of nitric oxide metabolic process positive regulation of nitric oxide biosynthetic process regulation of metabolic process positive regulation of cellular process catabolic process hydrogen peroxide metabolic process reactive oxygen species metabolic process hydrogen peroxide catabolic process multicellular organismal process system process circulatory system process regulation of blood pressure regulation of biological quality blood circulation developmental process erythrocyte development cellular developmental process homeostatic process hemopoiesis cell development erythrocyte differentiation multicellular organismal-level homeostasis myeloid cell differentiation immune system process cell differentiation anatomical structure development myeloid cell development homeostasis of number of cells myeloid cell homeostasis erythrocyte homeostasis regulation of body fluid levels wound healing response to stimulus homotypic cell-cell adhesion cell activation hemostasis platelet aggregation blood coagulation cell adhesion cell-cell adhesion response to stress coagulation response to wounding platelet activation oxygen transport localization transport gas transport establishment of localization one-carbon compound transport carbon dioxide transport renal system process renal absorption nitric oxide transport nitrogen compound transport defense response inflammatory response regulation of tube diameter regulation of tube size vascular process in circulatory system blood vessel diameter maintenance regulation of anatomical structure size response to hydrogen peroxide response to oxidative stress response to chemical response to oxygen-containing compound response to reactive oxygen species cellular response to stimulus cellular detoxification cellular response to chemical stimulus detoxification cellular oxidant detoxification cellular response to toxic substance response to toxic substance	protein-containing complex cellular anatomical structure intracellular anatomical structure hemoglobin complex cytoplasm cytosol haptoglobin-hemoglobin complex extracellular exosome membrane-bounded organelle extracellular vesicle extracellular organelle extracellular region organelle vesicle protein-containing complex cellular anatomical structure intracellular anatomical structure hemoglobin complex cytoplasm cytosol haptoglobin-hemoglobin complex extracellular exosome membrane-bounded organelle extracellular vesicle extracellular organelle extracellular region organelle vesicle extracellular membrane-bounded organelle membrane-enclosed lumen intracellular vesicle ficolin-1-rich granule intracellular membrane-bounded organelle endomembrane system intracellular organelle lumen intracellular organelle organelle lumen cytoplasmic vesicle ficolin-1-rich granule lumen secretory granule secretory vesicle blood microparticle tertiary granule lumen tertiary granule endocytic vesicle lumen endocytic vesicle
D, F	Hemopressin	oxygen binding binding small molecule binding oxygen carrier activity molecular carrier activity tetrapyrrole binding heme binding cation binding transition metal ion binding iron ion binding ion binding metal ion binding	catabolic process hydrogen peroxide metabolic process reactive oxygen species metabolic process metabolic process cellular process hydrogen peroxide catabolic process developmental process multicellular organismal process erythrocyte development cellular developmental process homeostatic process hemopoiesis cell development erythrocyte differentiation catabolic process hydrogen peroxide metabolic process reactive oxygen species metabolic process metabolic process cellular process hydrogen peroxide catabolic process developmental process multicellular organismal process erythrocyte development cellular developmental process homeostatic process hemopoiesis cell development erythrocyte differentiation multicellular organismal-level homeostasis myeloid cell differentiation immune system process cell differentiation anatomical structure development myeloid cell development homeostasis of number of cells myeloid cell homeostasis erythrocyte homeostasis oxygen transport localization transport gas transport establishment of localization one-carbon compound transport carbon dioxide transport nitric oxide transport nitrogen compound transport response to stimulus defense response response to stress inflammatory response response to hydrogen peroxide response to oxidative stress response to chemical response to oxygen-containing compound response to reactive oxygen species cellular response to stimulus cellular detoxification cellular response to chemical stimulus detoxification cellular oxidant detoxification cellular response to toxic substance response to toxic substance	protein-containing complex cellular anatomical structure intracellular anatomical structure hemoglobin complex cytoplasm cytosol haptoglobin-hemoglobin complex membrane extracellular exosome membrane-bounded organelle extracellular vesicle extracellular organelle extracellular region organelle protein-containing complex cellular anatomical structure intracellular anatomical structure hemoglobin complex cytoplasm cytosol haptoglobin-hemoglobin complex membrane extracellular exosome membrane-bounded organelle extracellular vesicle extracellular organelle extracellular region organelle vesicle extracellular membrane-bounded organelle blood microparticle intracellular vesicle membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen intracellular organelle cytoplasmic vesicle organelle lumen endocytic vesicle lumen endocytic vesicle
A, B, C	Scavenger receptor cysteine-rich type 1 protein M130	scaffold protein binding protein binding binding cargo receptor activity scavenger receptor activity	acute-phase response response to stimulus defense response response to stress inflammatory response acute inflammatory response	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol membrane-bounded organelle membrane intracellular vesicle intracellular membrane-bounded organelle intracellular organelle cytoplasmic vesicle membrane bounding membrane of organelle cytoplasmic vesicle vesicle membrane organelle cellular anatomical structure intracellular anatomical structure cytoplasm cytosol membrane-bounded organelle membrane intracellular vesicle intracellular membrane-bounded organelle intracellular organelle cytoplasmic vesicle membrane bounding membrane of organelle cytoplasmic vesicle vesicle membrane organelle endocytic vesicle membrane vesicle organelle membrane endocytic vesicle cell periphery plasma membrane cell surface external side of plasma membrane side of membrane extracellular region

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
E, G	IPR009050	Globin-like superfamily	Homologous Superfamily
E, G	IPR012292	Globin/Protoglobin	Homologous Superfamily
E, G	IPR000971	Globin	Domain
E, G	IPR050056	Hemoglobin and related oxygen transporters	Family
E, G	IPR002337	Hemoglobin, beta-type	Family
D, F	IPR002338	Hemoglobin, alpha-type	Family
D, F	IPR002339	Hemoglobin, pi	Family
D, F	IPR009050	Globin-like superfamily	Homologous Superfamily
D, F	IPR012292	Globin/Protoglobin	Homologous Superfamily
D, F	IPR000971	Globin	Domain
D, F	IPR050056	Hemoglobin and related oxygen transporters	Family
A, B, C	IPR036772	SRCR-like domain superfamily	Homologous Superfamily
A, B, C	IPR001190	SRCR domain	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
E, G	: P68871	sickle cell anemia beta thalassemia dominant beta-thalassemia Heinz body anemia polycythemia methemoglobinemia alpha thalassemia echinococcosis acquired polycythemia vera malaria hemoglobin C disease Plasmodium falciparum malaria Cyanosis hemoglobin D disease inherited hemoglobinopathy sickle cell anemia beta thalassemia dominant beta-thalassemia Heinz body anemia polycythemia methemoglobinemia alpha thalassemia echinococcosis acquired polycythemia vera malaria hemoglobin C disease Plasmodium falciparum malaria Cyanosis hemoglobin D disease inherited hemoglobinopathy congenital dyserythropoietic anemia familial hemolytic anemia beta-thalassemia HBB/LCRB hemoglobin E disease hemoglobin E-beta-thalassemia syndrome juvenile dermatomyositis lung adenocarcinoma delta-beta-thalassemia lymphoplasmacytic lymphoma malignant ependymoma MALT lymphoma myopathy anemia gastric cancer pancreatic ductal adenocarcinoma atypical teratoid rhabdoid tumor pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia hemoglobin M disease beta-thalassemia major hereditary persistence of fetal hemoglobin cerebrovascular disorder sickle cell-hemoglobin E disease syndrome large cell medulloblastoma thalassemia minor lung cancer diabetes mellitus Duchenne muscular dystrophy malignant glioma medulloblastoma acute myeloid leukemia non-small cell lung carcinoma gastric carcinoma pancreatic intraductal papillary-mucinous carcinoma B-cell chronic lymphocytic leukemia periodontitis hemolytic anemia breast cancer hereditary persistence of fetal hemoglobin-beta-thalassemia syndrome sickle cell-hemoglobin c disease syndrome invasive ductal breast carcinoma thalassemia limb-girdle muscular dystrophy tuberculosis lung carcinoma malignant colon neoplasm ductal breast carcinoma in situ malignant pancreatic neoplasm exocrine pancreatic carcinoma familial polycythemia ovarian cancer atopic eczema head and neck cancer pancreatic intraductal papillary-mucinous neoplasm hemoglobin C-beta-thalassemia syndrome beta-thalassemia intermedia hepatocellular carcinoma breast carcinoma hypophosphatemic bone disease sickle cell-hemoglobin d disease syndrome congenital anemia
D, F	: P69905	alpha thalassemia Heinz body anemia acquired polycythemia vera methemoglobinemia hemoglobin H disease polycythemia familial hemolytic anemia alpha thalassemia-intellectual disability syndrome type 1 sarcomatoid carcinoma carcinoma Mammary Neoplasms, Experimental type 2 diabetes mellitus cerebral infarction hemolytic anemia inborn carbohydrate metabolic disorder alpha thalassemia Heinz body anemia acquired polycythemia vera methemoglobinemia hemoglobin H disease polycythemia familial hemolytic anemia alpha thalassemia-intellectual disability syndrome type 1 sarcomatoid carcinoma carcinoma Mammary Neoplasms, Experimental type 2 diabetes mellitus cerebral infarction hemolytic anemia inborn carbohydrate metabolic disorder mammary neoplasms, animal thalassemia congenital anemia facioscapulohumeral muscular dystrophy familial polycythemia hydrops fetalis lung adenocarcinoma beta thalassemia sickle cell anemia Hb Bart's hydrops fetalis hemoglobin M disease maturity-onset diabetes of the young breast carcinoma undifferentiated carcinoma diabetes mellitus
A, B, C	: Q86VB7	IgA glomerulonephritis Liver Cirrhosis, Experimental carotid artery disease glioblastoma invasive ductal breast carcinoma limb-girdle muscular dystrophy lung cancer malignant ependymoma B-cell chronic lymphocytic leukemia nasopharyngeal carcinoma pancreatic intraductal papillary-mucinous carcinoma breast cancer pilocytic astrocytoma Sjogren syndrome cutaneous lupus erythematosus IgA glomerulonephritis Liver Cirrhosis, Experimental carotid artery disease glioblastoma invasive ductal breast carcinoma limb-girdle muscular dystrophy lung cancer malignant ependymoma B-cell chronic lymphocytic leukemia nasopharyngeal carcinoma pancreatic intraductal papillary-mucinous carcinoma breast cancer pilocytic astrocytoma Sjogren syndrome cutaneous lupus erythematosus type 2 diabetes mellitus Duchenne muscular dystrophy head and neck cancer juvenile dermatomyositis lung carcinoma astrocytic tumor medulloblastoma ovarian cancer Becker muscular dystrophy pancreatic intraductal papillary-mucinous neoplasm cancer pituitary cancer chronic obstructive pulmonary disease dermatomyositis ulcerative colitis hepatocellular carcinoma interstitial cystitis large cell medulloblastoma lung adenocarcinoma adrenal cortex carcinoma malignant colon neoplasm atopic eczema myopathy pancreatic ductal adenocarcinoma brain aneurysm pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia schizophrenia congestive heart failure tuberculosis diabetes mellitus

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.