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 9TKQ | pdb_00009tkq

E. coli 70S initiation complex bound to compact IF2-GDP (70S IC-II)


Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
I [auth AI]PF00338Ribosomal protein S10p/S20e (Ribosomal_S10)Ribosomal protein S10p/S20eThis family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes. Domain
H [auth AH]PF00380Ribosomal protein S9/S16 (Ribosomal_S9)Ribosomal protein S9/S16- Family
G [auth AG]PF00410Ribosomal protein S8 (Ribosomal_S8)Ribosomal protein S8Domain
F [auth AF]PF00177Ribosomal protein S7p/S5e (Ribosomal_S7)Ribosomal protein S7p/S5eThis family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes. Domain
DB [auth F2]PF00009Elongation factor Tu GTP binding domain (GTP_EFTU)Elongation factor Tu GTP binding domainThis domain contains a P-loop motif, also found in several other families such as Pfam:PF00071, Pfam:PF00025 and Pfam:PF00063. Elongation factor Tu consists of three structural domains, this plus two C-terminal beta barrel domains. Domain
DB [auth F2]PF22042Elongation factor G domain 2 (EF-G_D2)Elongation factor G domain 2Elongation factor G (EF-G) catalyzes the translocation step of translation. It consists of five structural domains, this entry represents the second domain [1]. This domain adopts a beta barrel structure. This family also includes domains found in ot ...Elongation factor G (EF-G) catalyzes the translocation step of translation. It consists of five structural domains, this entry represents the second domain [1]. This domain adopts a beta barrel structure. This family also includes domains found in other translation factors such as translation initiation factor IF-2, peptide chain release factor, etc.
Domain
DB [auth F2]PF03144Elongation factor Tu domain 2 (GTP_EFTU_D2)Elongation factor Tu domain 2Elongation factor Tu consists of three structural domains, this is the second domain. This domain adopts a beta barrel structure. This the second domain is involved in binding to charged tRNA [1]. This domain is also found in other proteins such as e ...Elongation factor Tu consists of three structural domains, this is the second domain. This domain adopts a beta barrel structure. This the second domain is involved in binding to charged tRNA [1]. This domain is also found in other proteins such as elongation factor G and translation initiation factor IF-2. This domain is structurally related to Pfam:PF03143, and in fact has weak sequence matches to this domain.
Domain
DB [auth F2]PF11987Translation-initiation factor 2 (IF-2)Translation-initiation factor 2IF-2 is a translation initiator in each of the three main phylogenetic domains (Eukaryotes [1], Bacteria [2] and Archaea [3]). IF2 interacts with formylmethionine-tRNA, GTP, IF1, IF3 and both ribosomal subunits [2]. Through these interactions, IF2 pr ...IF-2 is a translation initiator in each of the three main phylogenetic domains (Eukaryotes [1], Bacteria [2] and Archaea [3]). IF2 interacts with formylmethionine-tRNA, GTP, IF1, IF3 and both ribosomal subunits [2]. Through these interactions, IF2 promotes the binding of the initiator tRNA to the A site in the smaller ribosomal subunit and catalyses the hydrolysis of GTP following initiation-complex formation [2].
Domain
XA [auth BY]PF01386Ribosomal L25p family (Ribosomal_L25p)Ribosomal L25p familyRibosomal protein L25 is an RNA binding protein, that binds 5S rRNA. This family includes Ctc from B. subtilis Swiss:P14194, which is induced by stress. Domain
E [auth AE]PF01250Ribosomal protein S6 (Ribosomal_S6)Ribosomal protein S6Domain
WA [auth BX]PF17136Large ribosomal subunit protein uL24, C-terminal domain (ribosomal_L24)Large ribosomal subunit protein uL24, C-terminal domainThis entry describes the C-terminal domain in large ribosomal subunit protein uL24 (also known as RPL26). RPL26 is one of the proteins from the large ribosomal subunit. In their mature form, these proteins have 103 to 150 amino-acid residues. RPL26 m ...This entry describes the C-terminal domain in large ribosomal subunit protein uL24 (also known as RPL26). RPL26 is one of the proteins from the large ribosomal subunit. In their mature form, these proteins have 103 to 150 amino-acid residues. RPL26 makes very minor contributions to the biogenesis structure, and function of 60s ribosomal subunits [1]. However, RPL24 is essential to generate the first intermediate during 50s ribosomal subunits assembly [2]. RPL26 have an extra-ribosomal function to enhances p53 translation after DNA damage [3].
Domain
WA [auth BX]PF00467KOW motif (KOW)KOW motif- Family
VA [auth BW]PF00276Ribosomal protein L23 (Ribosomal_L23)Ribosomal protein L23- Family
UA [auth BV]PF00237Ribosomal protein L22p/L17e (Ribosomal_L22)Ribosomal protein L22p/L17eThis family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes. Domain
TA [auth BU]PF00829Ribosomal prokaryotic L21 protein (Ribosomal_L21p)Ribosomal prokaryotic L21 protein- Family
SA [auth BT]PF00453Ribosomal protein L20 (Ribosomal_L20)Ribosomal protein L20- Family
RA [auth BS]PF01245Ribosomal protein L19 (Ribosomal_L19)Ribosomal protein L19- Family
PA [auth BQ]PF01196Ribosomal protein L17 (Ribosomal_L17)Ribosomal protein L17- Family
OA [auth BP]PF00252Ribosomal protein L16p/L10e (Ribosomal_L16)Ribosomal protein L16p/L10eDomain
NA [auth BO]PF00828Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A)Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27AThis family includes higher eukaryotic ribosomal 60S L27A, archaeal 50S L18e, prokaryotic 50S L15, fungal mitochondrial L10, plant L27A, mitochondrial L15 and chloroplast L18-3 proteins. Domain
D [auth AD]PF03719Ribosomal protein S5, C-terminal domain (Ribosomal_S5_C)Ribosomal protein S5, C-terminal domainDomain
D [auth AD]PF00333Ribosomal protein S5, N-terminal domain (Ribosomal_S5)Ribosomal protein S5, N-terminal domainDomain
MA [auth BN]PF00238Ribosomal protein L14p/L23e (Ribosomal_L14)Ribosomal protein L14p/L23eDomain
LA [auth BM]PF00572Ribosomal protein L13 (Ribosomal_L13)Ribosomal protein L13- Family
KA [auth BK]PF03946Ribosomal protein L11, N-terminal domain (Ribosomal_L11_N)Ribosomal protein L11, N-terminal domainThe N-terminal domain of Ribosomal protein L11 adopts an alpha/beta fold and is followed by the RNA binding C-terminal domain. Domain
KA [auth BK]PF00298Ribosomal protein L11, RNA binding domain (Ribosomal_L11)Ribosomal protein L11, RNA binding domainDomain
JA [auth BI]PF01281Ribosomal protein L9, N-terminal domain (Ribosomal_L9_N)Ribosomal protein L9, N-terminal domainDomain
JA [auth BI]PF03948Ribosomal protein L9, C-terminal domain (Ribosomal_L9_C)Ribosomal protein L9, C-terminal domainDomain
IA [auth BF]PF00347Ribosomal protein L6 (Ribosomal_L6)Ribosomal protein L6Domain
HA [auth BE]PF00281Ribosomal protein L5 (Ribosomal_L5)Ribosomal protein L5Domain
HA [auth BE]PF00673ribosomal L5P family C-terminus (Ribosomal_L5_C)ribosomal L5P family C-terminusThis region is found associated with Pfam:PF00281. Domain
GA [auth BD]PF00573Ribosomal protein L4/L1 family (Ribosomal_L4)Ribosomal protein L4/L1 family- Family
FA [auth BC]PF00297Ribosomal protein L3 (Ribosomal_L3)Ribosomal protein L3- Family
EA [auth BB]PF03947Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C)Ribosomal Proteins L2, C-terminal domainDomain
EA [auth BB]PF00181Ribosomal Proteins L2, RNA binding N-terminal domain (Ribosomal_L2_N)Ribosomal Proteins L2, RNA binding N-terminal domainDomain
DA [auth BA]PF00687Ribosomal protein L1p/L10e family (Ribosomal_L1)Ribosomal protein L1p/L10e familyThis family includes prokaryotic L1 and eukaryotic L10. Domain
C [auth AC]PF00163Ribosomal protein S4/S9 N-terminal domain (Ribosomal_S4)Ribosomal protein S4/S9 N-terminal domain- Family
C [auth AC]PF01479S4 domain (S4)S4 domainThe S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ...The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA.
Domain
CA [auth B9]PF00444Ribosomal protein L36 (Ribosomal_L36)Ribosomal protein L36Domain
BA [auth B8]PF01632Ribosomal protein L35 (Ribosomal_L35p)Ribosomal protein L35- Family
AA [auth B7]PF00468Ribosomal protein L34 (Ribosomal_L34)Ribosomal protein L34- Family
Z [auth B6]PF00471Ribosomal protein L33 (Ribosomal_L33)Ribosomal protein L33- Family
Y [auth B5]PF01783Ribosomal L32p protein family (Ribosomal_L32p)Ribosomal L32p protein family- Family
X [auth B3]PF00327Ribosomal protein L30p/L7e (Ribosomal_L30)Ribosomal protein L30p/L7eThis family includes prokaryotic L30 and eukaryotic L7. Domain
W [auth B2]PF00831Ribosomal L29 protein (Ribosomal_L29)Ribosomal L29 protein- Family
V [auth B1]PF00830Ribosomal L28 family (Ribosomal_L28)Ribosomal L28 family- Family
B [auth AB]PF07650KH domain (KH_2)KH domainDomain
B [auth AB]PF00189Ribosomal protein S3, C-terminal domain (Ribosomal_S3_C)Ribosomal protein S3, C-terminal domainThis family contains a central domain Pfam:PF00013, hence the amino and carboxyl terminal domains are stored separately. This is a minimal carboxyl-terminal domain. Some are much longer. Domain
R [auth AR]PF00203Ribosomal protein S19 (Ribosomal_S19)Ribosomal protein S19Domain
Q [auth AQ]PF01084Ribosomal protein S18 (Ribosomal_S18)Ribosomal protein S18- Family
P [auth AP]PF00366Ribosomal protein S17 (Ribosomal_S17)Ribosomal protein S17Domain
O [auth AO]PF00886Ribosomal protein S16 (Ribosomal_S16)Ribosomal protein S16- Family
N [auth AN]PF00312Ribosomal protein S15 (Ribosomal_S15)Ribosomal protein S15Domain
M [auth AM]PF00253Ribosomal protein S14p/S29e (Ribosomal_S14)Ribosomal protein S14p/S29e- Family
L [auth AL]PF00416Ribosomal protein S13/S18 (Ribosomal_S13)Ribosomal protein S13/S18- Family
K [auth AK]PF00164Ribosomal protein S12/S23 (Ribosom_S12_S23)Ribosomal protein S12/S23This protein is known as S12 in bacteria and archaea and S23 in eukaryotes. Domain
J [auth AJ]PF00411Ribosomal protein S11 (Ribosomal_S11)Ribosomal protein S11- Family
A [auth AA]PF00318Ribosomal protein S2 (Ribosomal_S2)Ribosomal protein S2- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
I [auth AI]Small ribosomal subunit protein uS10
H [auth AH]Small ribosomal subunit protein uS9
G [auth AG]Small ribosomal subunit protein uS8
F [auth AF]Small ribosomal subunit protein uS7
DB [auth F2]Translation initiation factor IF-2
CB [auth D5]tRNAfMet---
BB [auth D4]mRNA---
AB [auth D3]5S Ribosomal RNA---
ZA [auth D2]23S Ribosomal RNA---
YA [auth D1]16S Ribosomal RNA---
XA [auth BY]Large ribosomal subunit protein bL25
E [auth AE]Small ribosomal subunit protein bS6, fully modified isoform
WA [auth BX]Large ribosomal subunit protein uL24
VA [auth BW]Large ribosomal subunit protein uL23
UA [auth BV]Large ribosomal subunit protein uL22
TA [auth BU]Large ribosomal subunit protein bL21
SA [auth BT]Large ribosomal subunit protein bL20
RA [auth BS]Large ribosomal subunit protein bL19
QA [auth BR]Large ribosomal subunit protein uL18
PA [auth BQ]Large ribosomal subunit protein bL17
OA [auth BP]50S ribosomal protein L16
NA [auth BO]Large ribosomal subunit protein uL15
D [auth AD]Small ribosomal subunit protein uS5
MA [auth BN]Large ribosomal subunit protein uL14
LA [auth BM]Large ribosomal subunit protein uL13
KA [auth BK]50S ribosomal protein L11
JA [auth BI]Large ribosomal subunit protein bL9
IA [auth BF]Large ribosomal subunit protein uL6
HA [auth BE]Large ribosomal subunit protein uL5
GA [auth BD]Large ribosomal subunit protein uL4
FA [auth BC]50S ribosomal protein L3
EA [auth BB]Large ribosomal subunit protein uL2
DA [auth BA]Large ribosomal subunit protein uL1
C [auth AC]Small ribosomal subunit protein uS4
CA [auth B9]Large ribosomal subunit protein bL36A
BA [auth B8]Large ribosomal subunit protein bL35
AA [auth B7]Large ribosomal subunit protein bL34
Z [auth B6]Large ribosomal subunit protein bL33
Y [auth B5]Large ribosomal subunit protein bL32
X [auth B3]Large ribosomal subunit protein uL30
W [auth B2]Large ribosomal subunit protein uL29
V [auth B1]Large ribosomal subunit protein bL28
U [auth B0]Large ribosomal subunit protein bL27
T [auth AT]Small ribosomal subunit protein bS21
B [auth AB]Small ribosomal subunit protein uS3
S [auth AS]Small ribosomal subunit protein bS20
R [auth AR]Small ribosomal subunit protein uS19
Q [auth AQ]Small ribosomal subunit protein bS18
P [auth AP]Small ribosomal subunit protein uS17
O [auth AO]Small ribosomal subunit protein bS16
N [auth AN]Small ribosomal subunit protein uS15
M [auth AM]Small ribosomal subunit protein uS14
L [auth AL]Small ribosomal subunit protein uS13
K [auth AK]Small ribosomal subunit protein uS12
J [auth AJ]Small ribosomal subunit protein uS11
A [auth AA]Small ribosomal subunit protein uS2

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
I [auth AI]IPR027486Small ribosomal subunit protein uS10 domainDomain
I [auth AI]IPR036838Small ribosomal subunit protein uS10 domain superfamilyHomologous Superfamily
I [auth AI]IPR018268Small ribosomal subunit protein uS10, conserved siteConserved Site
I [auth AI]IPR001848Small ribosomal subunit protein uS10Family
H [auth AH]IPR020574Small ribosomal subunit protein uS9, conserved siteConserved Site
H [auth AH]IPR023035Small ribosomal subunit protein uS9, bacteria/plastidFamily
H [auth AH]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
H [auth AH]IPR000754Small ribosomal subunit protein uS9Family
H [auth AH]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
G [auth AG]IPR000630Small ribosomal subunit protein uS8Family
G [auth AG]IPR047863Small ribosomal subunit protein uS8, conserved siteConserved Site
G [auth AG]IPR035987Small ribosomal subunit protein uS8 superfamilyHomologous Superfamily
F [auth AF]IPR020606Small ribosomal subunit protein uS7, conserved siteConserved Site
F [auth AF]IPR005717Small ribosomal subunit protein uS7, bacteria/organellaFamily
F [auth AF]IPR036823Small ribosomal subunit protein uS7 domain superfamilyHomologous Superfamily
F [auth AF]IPR000235Small ribosomal subunit protein uS7Family
F [auth AF]IPR023798Small ribosomal subunit protein uS7 domainDomain
DB [auth F2]IPR009061Putative DNA-binding domain superfamilyHomologous Superfamily
DB [auth F2]IPR000795Translational (tr)-type GTP-binding domainDomain
DB [auth F2]IPR013575Initiation factor 2 associated domain, bacterialDomain
DB [auth F2]IPR004161Translation elongation factor EFTu-like, domain 2Domain
DB [auth F2]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
DB [auth F2]IPR015760Translation initiation factor IF- 2Family
DB [auth F2]IPR023115Translation initiation factor IF- 2, domain 3Domain
DB [auth F2]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
DB [auth F2]IPR005225Small GTP-binding domainDomain
DB [auth F2]IPR000178Translation initiation factor IF-2, bacterial-likeFamily
DB [auth F2]IPR053905Elongation factor G-like, domain IIDomain
DB [auth F2]IPR006847Translation initiation factor IF-2, N-terminalDomain
DB [auth F2]IPR044145Translation initiation factor IF-2, domain IIDomain
DB [auth F2]IPR036925Translation initiation factor IF-2, domain 3 superfamilyHomologous Superfamily
XA [auth BY]IPR020055Ribosomal protein bL25, short-formFamily
XA [auth BY]IPR029751Large ribosomal subunit protein bL25, L25 domainDomain
XA [auth BY]IPR020056Large ribosomal subunit protein bL25/Gln-tRNA synthetase, N-terminalHomologous Superfamily
XA [auth BY]IPR011035Large ribosomal subunit protein bL25/Gln-tRNA synthetase, anti-codon-binding domain superfamilyHomologous Superfamily
XA [auth BY]IPR020930Large ribosomal subunit protein uL5, bacteriaFamily
E [auth AE]IPR020815Small ribosomal subunit protein bS6, conserved siteConserved Site
E [auth AE]IPR000529Small ribosomal subunit protein bS6Family
E [auth AE]IPR020814Small ribosomal subunit protein bS6, plastid/chloroplastFamily
E [auth AE]IPR035980Small ribosomal subunit protein bS6 superfamilyHomologous Superfamily
E [auth AE]IPR014717Translation elongation factor EF1B/small ribosomal subunit protein bS6Homologous Superfamily
WA [auth BX]IPR057264Large ribosomal subunit protein uL24, C-terminal domainDomain
WA [auth BX]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
WA [auth BX]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
WA [auth BX]IPR003256Large ribosomal subunit protein uL24Family
WA [auth BX]IPR041988Large ribosomal subunit protein uL24, KOW domainDomain
WA [auth BX]IPR005824KOWDomain
WA [auth BX]IPR005825Large ribosomal subunit protein uL24, conserved siteConserved Site
VA [auth BW]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
VA [auth BW]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
VA [auth BW]IPR001014Large ribosomal subunit protein uL23, conserved siteConserved Site
VA [auth BW]IPR013025Large ribosomal subunit protein uL23-likeFamily
UA [auth BV]IPR036394Ribosomal protein uL22 superfamilyHomologous Superfamily
UA [auth BV]IPR001063Large ribosomal subunit protein uL22Family
UA [auth BV]IPR047867Large ribosomal subunit protein uL22, bacteria/organellaFamily
UA [auth BV]IPR018260Large ribosomal subunit protein uL22, conserved siteConserved Site
UA [auth BV]IPR005727Large ribosomal subunit protein uL22, bacterial/chloroplast-typeFamily
TA [auth BU]IPR028909Large ribosomal subunit protein bL21-likeFamily
TA [auth BU]IPR001787Large ribosomal subunit protein bL21Family
TA [auth BU]IPR036164Large ribosomal subunit protein bL21-like superfamilyHomologous Superfamily
TA [auth BU]IPR018258Large ribosomal subunit protein bL21, conserved siteConserved Site
SA [auth BT]IPR049946Large ribosomal subunit protein bL20, conserved siteConserved Site
SA [auth BT]IPR035566Ribosomal protein bL20, C-terminalHomologous Superfamily
SA [auth BT]IPR005813Large ribosomal subunit protein bL20Family
RA [auth BS]IPR001857Large ribosomal subunit protein bL19Family
RA [auth BS]IPR038657Large ribosomal subunit protein bL19 superfamilyHomologous Superfamily
RA [auth BS]IPR018257Large ribosomal subunit protein bL19, conserved siteConserved Site
RA [auth BS]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
QA [auth BR]IPR005484Large ribosomal subunit protein uL18, bacterial/plantae/animaliaFamily
QA [auth BR]IPR057268Large ribosomal subunit protein uL18Family
QA [auth BR]IPR004389Large ribosomal subunit protein uL18, bacteriaFamily
PA [auth BQ]IPR036373Large ribosomal subunit protein bL17 superfamilyHomologous Superfamily
PA [auth BQ]IPR047859Large ribosomal subunit protein bL17, conserved siteConserved Site
PA [auth BQ]IPR000456Large ribosomal subunit protein bL17Family
OA [auth BP]IPR000114Large ribosomal subunit protein uL16, bacteriaFamily
OA [auth BP]IPR036920Large ribosomal subunit protein uL16 superfamilyHomologous Superfamily
OA [auth BP]IPR020798Large ribosomal subunit protein uL16, conserved siteConserved Site
OA [auth BP]IPR016180Large ribosomal subunit protein uL16 domainDomain
OA [auth BP]IPR047873Large ribosomal subunit protein uL16Family
NA [auth BO]IPR021131Large ribosomal subunit protein uL15/eL18Domain
NA [auth BO]IPR030878Large ribosomal subunit protein uL15Family
NA [auth BO]IPR001196Large ribosomal subunit protein uL15, conserved siteConserved Site
NA [auth BO]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
NA [auth BO]IPR063184Ribosomal protein uL15, N-terminal regionDomain
NA [auth BO]IPR005749Large ribosomal subunit protein uL15, bacteriaFamily
D [auth AD]IPR000851Small ribosomal subunit protein uS5Family
D [auth AD]IPR005324Small ribosomal subunit protein uS5, C-terminalDomain
D [auth AD]IPR005712Small ribosomal subunit protein uS5, bacteriaFamily
D [auth AD]IPR013810Small ribosomal subunit protein uS5, N-terminalDomain
D [auth AD]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
D [auth AD]IPR018192Small ribosomal subunit protein uS5, N-terminal, conserved siteConserved Site
D [auth AD]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
MA [auth BN]IPR036853Large ribosomal subunit protein uL14 superfamilyHomologous Superfamily
MA [auth BN]IPR000218Large ribosomal subunit protein uL14Family
MA [auth BN]IPR019972Large ribosomal subunit protein uL14, conserved siteConserved Site
MA [auth BN]IPR005745Large ribosomal subunit protein uL14, bacteriaFamily
LA [auth BM]IPR023563Large ribosomal subunit protein uL13, conserved siteConserved Site
LA [auth BM]IPR005822Large ribosomal subunit protein uL13Family
LA [auth BM]IPR005823Large ribosomal subunit protein uL13, bacteriaFamily
LA [auth BM]IPR036899Large ribosomal subunit protein uL13 superfamilyHomologous Superfamily
KA [auth BK]IPR020785Large ribosomal subunit protein uL11, conserved siteConserved Site
KA [auth BK]IPR020783Large ribosomal subunit protein uL11, C-terminalDomain
KA [auth BK]IPR000911Ribosomal protein uL11Family
KA [auth BK]IPR020784Large ribosomal subunit protein uL11, N-terminalDomain
KA [auth BK]IPR036769Large ribosomal subunit protein uL11, C-terminal domain superfamilyHomologous Superfamily
KA [auth BK]IPR036796Large ribosomal subunit protein uL11, N-terminal domain superfamilyHomologous Superfamily
KA [auth BK]IPR006519Large ribosomal subunit protein uL11, bacteriaFamily
JA [auth BI]IPR036935Large ribosomal subunit protein bL9, N-terminal domain superfamilyHomologous Superfamily
JA [auth BI]IPR020069Large ribosomal subunit protein bL9, C-terminalDomain
JA [auth BI]IPR020070Large ribosomal subunit protein bL9, N-terminalDomain
JA [auth BI]IPR009027Large ribosomal subunit protein bL9/RNase H1, N-terminalHomologous Superfamily
JA [auth BI]IPR020594Large ribosomal subunit protein bL9, bacteria/chloroplastFamily
JA [auth BI]IPR036791Large ribosomal subunit protein bL9, C-terminal domain superfamilyHomologous Superfamily
JA [auth BI]IPR000244Large ribosomal subunit protein bL9Family
IA [auth BF]IPR020040Large ribosomal subunit protein uL6, alpha-beta domainDomain
IA [auth BF]IPR036789Large ribosomal subunit protein uL6-like, alpha-beta domain superfamilyHomologous Superfamily
IA [auth BF]IPR000702Large ribosomal subunit protein uL6-likeFamily
IA [auth BF]IPR019906Large ribosomal subunit protein uL6, bacteriaFamily
IA [auth BF]IPR002358Large ribosomal subunit protein uL6, conserved siteConserved Site
HA [auth BE]IPR020929Large ribosomal subunit protein uL5, conserved siteConserved Site
HA [auth BE]IPR022803Large ribosomal subunit protein uL5 domain superfamilyHomologous Superfamily
HA [auth BE]IPR031309Large ribosomal subunit protein uL5, C-terminalDomain
HA [auth BE]IPR031310Large ribosomal subunit protein uL5, N-terminalDomain
HA [auth BE]IPR002132Large ribosomal subunit protein uL5Family
HA [auth BE]IPR020930Large ribosomal subunit protein uL5, bacteriaFamily
GA [auth BD]IPR013005Large ribosomal subunit protein uL4-likeFamily
GA [auth BD]IPR002136Large ribosomal subunit protein uL4Family
GA [auth BD]IPR023574Large ribosomal subunit protein uL4 domain superfamilyHomologous Superfamily
FA [auth BC]IPR019926Large ribosomal subunit protein uL3, conserved siteConserved Site
FA [auth BC]IPR019927Large ribosomal subunit protein uL3, bacteria/organellaFamily
FA [auth BC]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
FA [auth BC]IPR000597Large ribosomal subunit protein uL3Family
EA [auth BB]IPR005880Large ribosomal subunit protein uL2, bacteria/organellaFamily
EA [auth BB]IPR022669Large ribosomal subunit protein uL2, C-terminalDomain
EA [auth BB]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
EA [auth BB]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
EA [auth BB]IPR022671Large ribosomal subunit protein uL2, conserved siteConserved Site
EA [auth BB]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
EA [auth BB]IPR022666Large ribosomal subunit protein uL2, RNA-binding domainDomain
EA [auth BB]IPR014726Large ribosomal subunit protein uL2, domain 3Homologous Superfamily
EA [auth BB]IPR002171Large ribosomal subunit protein uL2Family
DA [auth BA]IPR005878Large ribosomal subunit protein uL1, bacteriaFamily
DA [auth BA]IPR023674Ribosomal protein uL1-likeHomologous Superfamily
DA [auth BA]IPR023673Large ribosomal subunit protein uL1, conserved siteConserved Site
DA [auth BA]IPR016095Large ribosomal subunit protein uL1, 3-layer alpha/beta-sandwich domainHomologous Superfamily
DA [auth BA]IPR002143Large ribosomal subunit protein uL1Family
DA [auth BA]IPR028364Ribosomal protein uL1/ribosomal biogenesis proteinFamily
C [auth AC]IPR002942RNA-binding S4 domainDomain
C [auth AC]IPR022801Small ribosomal subunit protein uS4Family
C [auth AC]IPR018079Small ribosomal subunit protein uS4, conserved siteConserved Site
C [auth AC]IPR001912Small ribosomal subunit protein uS4, N-terminalDomain
C [auth AC]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
C [auth AC]IPR005709Small ribosomal subunit protein uS4, bacteriaFamily
CA [auth B9]IPR000473Large ribosomal subunit protein bL36Family
CA [auth B9]IPR035977Large ribosomal subunit protein bL36 superfamilyHomologous Superfamily
BA [auth B8]IPR021137Large ribosomal subunit protein bL35-likeFamily
BA [auth B8]IPR018265Large ribosomal subunit protein bL35, conserved siteConserved Site
BA [auth B8]IPR001706Large ribosomal subunit protein bL35Family
BA [auth B8]IPR037229Large ribosomal subunit protein bL35 superfamilyHomologous Superfamily
AA [auth B7]IPR020939Large ribosomal subunit protein bL34, conserved siteConserved Site
AA [auth B7]IPR000271Large ribosomal subunit protein bL34Family
Z [auth B6]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
Z [auth B6]IPR038584Large ribosomal subunit protein bL33 superfamilyHomologous Superfamily
Z [auth B6]IPR001705Large ribosomal subunit protein bL33Family
Z [auth B6]IPR018264Large ribosomal subunit protein bL33, conserved siteConserved Site
Y [auth B5]IPR002677Large ribosomal subunit protein bL32Family
Y [auth B5]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
Y [auth B5]IPR044957Large ribosomal subunit protein bL32, bacteriaFamily
X [auth B3]IPR036919Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamilyHomologous Superfamily
X [auth B3]IPR005996Large ribosomal subunit protein uL30, bacteriaFamily
X [auth B3]IPR016082Large ribosomal subunit protein uL30-like, ferredoxin-like fold domainDomain
X [auth B3]IPR018038Large ribosomal subunit protein uL30, conserved siteConserved Site
W [auth B2]IPR050063Universal ribosomal protein uL29Family
W [auth B2]IPR001854Large ribosomal subunit protein uL29Family
W [auth B2]IPR036049Large ribosomal subunit protein uL29 superfamilyHomologous Superfamily
W [auth B2]IPR018254Large ribosomal subunit protein uL29, conserved siteConserved Site
V [auth B1]IPR037147Large ribosomal subunit protein bL28 superfamilyHomologous Superfamily
V [auth B1]IPR001383Large ribosomal subunit protein bL28, bacteriaFamily
V [auth B1]IPR026569Large ribosomal subunit protein bL28Family
V [auth B1]IPR034704Large ribosomal subunit protein bL28/bL31-like superfamilyHomologous Superfamily
U [auth B0]IPR001684Large ribosomal subunit protein bL27Family
U [auth B0]IPR018261Large ribosomal subunit protein bL27, conserved siteConserved Site
T [auth AT]IPR038380Small ribosomal subunit protein bS21 superfamilyHomologous Superfamily
T [auth AT]IPR018278Small ribosomal subunit protein bS21, conserved siteConserved Site
T [auth AT]IPR001911Small ribosomal subunit protein bS21Family
B [auth AB]IPR005704Small ribosomal subunit protein uS3, bacteriaFamily
B [auth AB]IPR001351Small ribosomal subunit protein uS3, C-terminalDomain
B [auth AB]IPR057258Small ribosomal subunit protein uS3Family
B [auth AB]IPR009019K homology domain superfamily, prokaryotic typeHomologous Superfamily
B [auth AB]IPR004087K Homology domainDomain
B [auth AB]IPR004044K Homology domain, type 2Domain
B [auth AB]IPR015946K homology domain-like, alpha/betaHomologous Superfamily
B [auth AB]IPR036419Ribosomal protein S3, C-terminal domain superfamilyHomologous Superfamily
B [auth AB]IPR018280Small ribosomal subunit protein uS3, conserved siteConserved Site
S [auth AS]IPR036510Small ribosomal subunit protein bS20 superfamilyHomologous Superfamily
S [auth AS]IPR002583Small ribosomal subunit protein bS20Family
R [auth AR]IPR005732Small ribosomal subunit protein uS19, bacteriaFamily
R [auth AR]IPR002222Small ribosomal subunit protein uS19Family
R [auth AR]IPR023575Small ribosomal subunit protein uS19, superfamilyHomologous Superfamily
R [auth AR]IPR020934Small ribosomal subunit protein uS19, conserved siteConserved Site
Q [auth AQ]IPR001648Small ribosomal subunit protein bS18Family
Q [auth AQ]IPR018275Small ribosomal subunit protein bS18, conserved siteConserved Site
Q [auth AQ]IPR036870Small ribosomal subunit protein bS18 superfamilyHomologous Superfamily
P [auth AP]IPR019979Small ribosomal subunit protein uS17, conserved siteConserved Site
P [auth AP]IPR019984Small ribosomal subunit protein uS17, bacteria/chloroplastFamily
P [auth AP]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
P [auth AP]IPR000266Small ribosomal subunit protein uS17Family
O [auth AO]IPR023803Small ribosomal subunit protein bS16 domain superfamilyHomologous Superfamily
O [auth AO]IPR000307Small ribosomal subunit protein bS16Family
O [auth AO]IPR020592Small ribosomal subunit protein bS16, conserved siteConserved Site
N [auth AN]IPR005290Small ribosomal subunit protein uS15, bacteriaFamily
N [auth AN]IPR009068uS15/NS1, RNA-binding domain superfamilyHomologous Superfamily
N [auth AN]IPR000589Small ribosomal subunit protein uS15Family
M [auth AM]IPR001209Small ribosomal subunit protein uS14Family
M [auth AM]IPR018271Small ribosomal subunit protein uS14, conserved siteConserved Site
M [auth AM]IPR023036Small ribosomal subunit protein uS14, bacteria/plastidFamily
L [auth AL]IPR018269Small ribosomal subunit protein uS13, conserved siteConserved Site
L [auth AL]IPR027437Small ribosomal subunit protein uS13, C-terminalHomologous Superfamily
L [auth AL]IPR001892Small ribosomal subunit protein uS13Family
L [auth AL]IPR010979Small ribosomal subunit protein uS13-like, H2THHomologous Superfamily
L [auth AL]IPR019980Small ribosomal subunit protein uS13, bacteriaFamily
K [auth AK]IPR005679Ribosomal protein uS12, bacteriaFamily
K [auth AK]IPR006032Small ribosomal subunit protein uS12Family
K [auth AK]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
J [auth AJ]IPR001971Small ribosomal subunit protein uS11Family
J [auth AJ]IPR036967Small ribosomal subunit protein uS11 superfamilyHomologous Superfamily
J [auth AJ]IPR019981Small ribosomal subunit protein uS11, bacteriaFamily
J [auth AJ]IPR018102Small ribosomal subunit protein uS11, conserved siteConserved Site
A [auth AA]IPR005706Small ribosomal subunit protein uS2, bacteria/mitochondria/plastidFamily
A [auth AA]IPR023591Small ribosomal subunit protein uS2, flavodoxin-like domain superfamilyHomologous Superfamily
A [auth AA]IPR018130Small ribosomal subunit protein uS2, conserved siteConserved Site
A [auth AA]IPR001865Small ribosomal subunit protein uS2Family

Protein Modification Annotation

Modified Residue(s)
ChainResidue(s)Description
CB [auth D5]FME Parent Component: MET

:  AA0021 , AA0566

:  N-formyl-L-methionine residue MOD:00030 , N-formyl-L-methionine (Met) MOD:00482 , N-[(L-histidin-1'-yl)methyl]-L-methionine (fMet) MOD:01890 , N-[(L-histidin-1'-yl)methyl]-L-methionine (Met) MOD:01891