9TDM | pdb_00009tdm

Cryo-EM structure of AccA3/AccD4/AccD5/AccE5 in complex with Propionyl-CoA

External Resource: Annotation

Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
O [auth E5a], P [auth E5b]	Acetyl-/propionyl-coenzyme A carboxylase AccE5	CoA carboxylase activity acetyl-CoA carboxylase activity ligase activity, forming carbon-carbon bonds catalytic activity ligase activity propionyl-CoA carboxylase activity	-	-
K [auth D5a], L [auth D5b], M [auth D5c], N [auth D5d]	Propionyl-CoA carboxylase beta chain	CoA carboxylase activity acetyl-CoA carboxylase activity ligase activity, forming carbon-carbon bonds catalytic activity ligase activity propionyl-CoA carboxylase activity	metabolic process cellular process carbon fixation	acetyl-CoA carboxylase complex protein-containing complex cellular anatomical structure intracellular anatomical structure catalytic complex cytoplasm
I [auth D4a], J [auth D4b]	Propionyl-CoA carboxylase beta chain	CoA carboxylase activity propionyl-CoA carboxylase activity ligase activity, forming carbon-carbon bonds catalytic activity ligase activity	-	acetyl-CoA carboxylase complex protein-containing complex cellular anatomical structure intracellular anatomical structure catalytic complex cytoplasm
A [auth A3a], B [auth A3b], C [auth A3c], D [auth A3d], E [auth A3e], A [auth A3a], B [auth A3b], C [auth A3c], D [auth A3d], E [auth A3e], F [auth A3f], G [auth A3g], H [auth A3h]	Biotin-dependent acyl-coenzyme A carboxylase alpha3 subunit	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding biotin carboxylase activity catalytic activity ligase activity, forming carbon-nitrogen bonds ligase activity cation binding metal ion binding	fatty acid metabolic process monocarboxylic acid biosynthetic process small molecule biosynthetic process oxoacid metabolic process carboxylic acid metabolic process lipid biosynthetic process primary metabolic process fatty acid biosynthetic process carboxylic acid biosynthetic process biosynthetic process small molecule metabolic process metabolic process cellular process monocarboxylic acid metabolic process fatty acid metabolic process monocarboxylic acid biosynthetic process small molecule biosynthetic process oxoacid metabolic process carboxylic acid metabolic process lipid biosynthetic process primary metabolic process fatty acid biosynthetic process carboxylic acid biosynthetic process biosynthetic process small molecule metabolic process metabolic process cellular process monocarboxylic acid metabolic process lipid metabolic process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
O [auth E5a], P [auth E5b]	IPR032716	Biotin-dependent acetyl-/propionyl-coenzyme A carboxylase epsilon subunit	Family
K [auth D5a], L [auth D5b], M [auth D5c], N [auth D5d]	IPR011763	Acetyl-coenzyme A carboxyltransferase, C-terminal	Domain
K [auth D5a], L [auth D5b], M [auth D5c], N [auth D5d]	IPR029045	ClpP/crotonase-like domain superfamily	Homologous Superfamily
K [auth D5a], L [auth D5b], M [auth D5c], N [auth D5d]	IPR011762	Acetyl-coenzyme A carboxyltransferase, N-terminal	Domain
K [auth D5a], L [auth D5b], M [auth D5c], N [auth D5d]	IPR034733	Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta	Domain
K [auth D5a], L [auth D5b], M [auth D5c], N [auth D5d]	IPR051047	Acyl-CoA Carboxylase Beta Subunit	Family
I [auth D4a], J [auth D4b]	IPR011763	Acetyl-coenzyme A carboxyltransferase, C-terminal	Domain
I [auth D4a], J [auth D4b]	IPR029045	ClpP/crotonase-like domain superfamily	Homologous Superfamily
I [auth D4a], J [auth D4b]	IPR011762	Acetyl-coenzyme A carboxyltransferase, N-terminal	Domain
I [auth D4a], J [auth D4b]	IPR034733	Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta	Domain
I [auth D4a], J [auth D4b]	IPR051047	Acyl-CoA Carboxylase Beta Subunit	Family
A [auth A3a], B [auth A3b], C [auth A3c], D [auth A3d], E [auth A3e], A [auth A3a], B [auth A3b], C [auth A3c], D [auth A3d], E [auth A3e], F [auth A3f], G [auth A3g], H [auth A3h]	IPR005481	Biotin carboxylase-like, N-terminal domain	Domain
A [auth A3a], B [auth A3b], C [auth A3c], D [auth A3d], E [auth A3e], A [auth A3a], B [auth A3b], C [auth A3c], D [auth A3d], E [auth A3e], F [auth A3f], G [auth A3g], H [auth A3h]	IPR011761	ATP-grasp fold	Domain
A [auth A3a], B [auth A3b], C [auth A3c], D [auth A3d], E [auth A3e], A [auth A3a], B [auth A3b], C [auth A3c], D [auth A3d], E [auth A3e], F [auth A3f], G [auth A3g], H [auth A3h]	IPR011764	Biotin carboxylation domain	Domain
A [auth A3a], B [auth A3b], C [auth A3c], D [auth A3d], E [auth A3e], A [auth A3a], B [auth A3b], C [auth A3c], D [auth A3d], E [auth A3e], F [auth A3f], G [auth A3g], H [auth A3h]	IPR013815	ATP-grasp fold, subdomain 1	Homologous Superfamily
A [auth A3a], B [auth A3b], C [auth A3c], D [auth A3d], E [auth A3e], A [auth A3a], B [auth A3b], C [auth A3c], D [auth A3d], E [auth A3e], F [auth A3f], G [auth A3g], H [auth A3h]	IPR050856	Biotin-dependent Carboxylase Complex	Family
A [auth A3a], B [auth A3b], C [auth A3c], D [auth A3d], E [auth A3e], A [auth A3a], B [auth A3b], C [auth A3c], D [auth A3d], E [auth A3e], F [auth A3f], G [auth A3g], H [auth A3h]	IPR005479	Carbamoyl phosphate synthase, ATP-binding domain	Domain
A [auth A3a], B [auth A3b], C [auth A3c], D [auth A3d], E [auth A3e], A [auth A3a], B [auth A3b], C [auth A3c], D [auth A3d], E [auth A3e], F [auth A3f], G [auth A3g], H [auth A3h]	IPR005482	Biotin carboxylase, C-terminal	Domain
A [auth A3a], B [auth A3b], C [auth A3c], D [auth A3d], E [auth A3e], A [auth A3a], B [auth A3b], C [auth A3c], D [auth A3d], E [auth A3e], F [auth A3f], G [auth A3g], H [auth A3h]	IPR016185	Pre-ATP-grasp domain superfamily	Homologous Superfamily
A [auth A3a], B [auth A3b], C [auth A3c], D [auth A3d], E [auth A3e], A [auth A3a], B [auth A3b], C [auth A3c], D [auth A3d], E [auth A3e], F [auth A3f], G [auth A3g], H [auth A3h]	IPR011054	Rudiment single hybrid motif	Homologous Superfamily
A [auth A3a], B [auth A3b], C [auth A3c], D [auth A3d], E [auth A3e], A [auth A3a], B [auth A3b], C [auth A3c], D [auth A3d], E [auth A3e], F [auth A3f], G [auth A3g], H [auth A3h]	IPR011053	Single hybrid motif	Homologous Superfamily
A [auth A3a], B [auth A3b], C [auth A3c], D [auth A3d], E [auth A3e], A [auth A3a], B [auth A3b], C [auth A3c], D [auth A3d], E [auth A3e], F [auth A3f], G [auth A3g], H [auth A3h]	IPR001882	Biotin-binding site	Binding Site
A [auth A3a], B [auth A3b], C [auth A3c], D [auth A3d], E [auth A3e], A [auth A3a], B [auth A3b], C [auth A3c], D [auth A3d], E [auth A3e], F [auth A3f], G [auth A3g], H [auth A3h]	IPR000089	Biotin/lipoyl attachment	Domain

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.