9T67 | pdb_00009t67

Cytoplasmic lattice filament repeat unit with ubiquitin

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A [auth 0]	SCOP2B Superfamily	Eukaryotic type KH-domain (KH-domain type I)	8052235	3001023	SCOP2B (2022-06-29)
OA [auth S]	SCOP2B Superfamily	Eukaryotic type KH-domain (KH-domain type I)	8052235	3001023	SCOP2B (2022-06-29)
GB [auth o]	SCOP2B Superfamily	PUA domain-like	8038600	3001015	SCOP2B (2022-06-29)
P [auth AH]	SCOP2B Superfamily	PUA domain-like	8038600	3001015	SCOP2B (2022-06-29)
WA [auth a]	SCOP2B Superfamily	PUA domain-like	8038600	3001015	SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth 0], OA [auth S]	PF08527	Protein-arginine deiminase (PAD) middle domain (PAD_M)	Protein-arginine deiminase (PAD) middle domain	This family represents the central non-catalytic domain of protein-arginine deiminase. This domain has an immunoglobulin-like fold.	Domain
A [auth 0], OA [auth S]	PF16005	KH-like RNA-binding domain (MOEP19)	KH-like RNA-binding domain	MOEP19 is a family of mammalian KH-like RNA-binding motifs. The family is expressed during early embryogenesis. It appears to effect an early form of molecular asymmetry within the murine oocyte cytoplasm. The family marks a defined cortical cytoplas ...	MOEP19 is a family of mammalian KH-like RNA-binding motifs. The family is expressed during early embryogenesis. It appears to effect an early form of molecular asymmetry within the murine oocyte cytoplasm. The family marks a defined cortical cytoplasmic domain in oocytes and provides evidence for mammalian oocyte polarity and a form of pre-patterning that persists in zygotes and early embryos through the morula stage [1].	Domain
A [auth 0], OA [auth S]	PF03068	Protein-arginine deiminase (PAD) (PAD)	Protein-arginine deiminase (PAD)	-	Family
A [auth 0], OA [auth S]	PF08526	Protein-arginine deiminase (PAD) N-terminal domain (PAD_N)	Protein-arginine deiminase (PAD) N-terminal domain	This family represents the N-terminal non-catalytic domain of protein-arginine deiminase. This domain has a cupredoxin-like fold.	Domain
AA [auth E], B [auth 1], BA [auth F], C [auth 2], CA [auth G], AA [auth E], B [auth 1], BA [auth F], C [auth 2], CA [auth G], D [auth 3], DA [auth H], EA [auth I], EB [auth m], FA [auth J], GA [auth K], HA [auth L], K [auth A], KB [auth s], LB [auth t], MB [auth u], NB [auth v], OB [auth w], PB [auth x], QB [auth y], RB [auth z], X [auth B], Y [auth C], Z [auth D]	PF12148	Tandem tudor domain within UHRF1 (TTD)	Tandem tudor domain within UHRF1	TTD, tandem tudor domain within UHRF1 preferentially binds H3 histone tails trimethylated at Lys-9. It specifically recognises H3 tail peptides with the heterochromatin-associated modification state of trimethylated lysine 9 and unmodified lysine 4 ( ...	TTD, tandem tudor domain within UHRF1 preferentially binds H3 histone tails trimethylated at Lys-9. It specifically recognises H3 tail peptides with the heterochromatin-associated modification state of trimethylated lysine 9 and unmodified lysine 4 (H3K4me0/K9me3). This domain is found in eukaryotes and is found in association with Pfam:PF00097, Pfam:PF02182, Pfam:PF00628, Pfam:PF00240.	Domain
AA [auth E], B [auth 1], BA [auth F], C [auth 2], CA [auth G], AA [auth E], B [auth 1], BA [auth F], C [auth 2], CA [auth G], D [auth 3], DA [auth H], EA [auth I], EB [auth m], FA [auth J], GA [auth K], HA [auth L], K [auth A], KB [auth s], LB [auth t], MB [auth u], NB [auth v], OB [auth w], PB [auth x], QB [auth y], RB [auth z], X [auth B], Y [auth C], Z [auth D]	PF00091	Tubulin/FtsZ family, GTPase domain (Tubulin)	Tubulin/FtsZ family, GTPase domain	This family includes the tubulin alpha, beta and gamma chains, as well as the bacterial FtsZ family of proteins. Members of this family are involved in polymer formation. FtsZ is the polymer-forming protein of bacterial cell division. It is part of a ...	This family includes the tubulin alpha, beta and gamma chains, as well as the bacterial FtsZ family of proteins. Members of this family are involved in polymer formation. FtsZ is the polymer-forming protein of bacterial cell division. It is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria and archaea. Tubulin is the major component of microtubules.	Domain
AA [auth E], B [auth 1], BA [auth F], C [auth 2], CA [auth G], AA [auth E], B [auth 1], BA [auth F], C [auth 2], CA [auth G], D [auth 3], DA [auth H], EA [auth I], EB [auth m], FA [auth J], GA [auth K], HA [auth L], K [auth A], KB [auth s], LB [auth t], MB [auth u], NB [auth v], OB [auth w], PB [auth x], QB [auth y], RB [auth z], X [auth B], Y [auth C], Z [auth D]	PF02182	SAD/SRA domain (SAD_SRA)	SAD/SRA domain	The domain goes by several names including SAD [1], SRA [2] and YDG [3]. It adopts a beta barrel, modified PUA-like, fold that is widely present in eukaryotic chromatin proteins and in bacteria [4]. Versions of this domain are known to bind hemi-me ...	The domain goes by several names including SAD [1], SRA [2] and YDG [3]. It adopts a beta barrel, modified PUA-like, fold that is widely present in eukaryotic chromatin proteins and in bacteria [4]. Versions of this domain are known to bind hemi-methylated CpG dinucleotides and also other 5mC containing dinucleotides. The domain binds DNA by flipping out the methylated cytosine base from the DNA double helix [5].The conserved tyrosine and aspartate residues and a glycine rich patch are critical for recognition of the flipped out base [4][5]. Mammalian UHRF1 that contains this domain plays an important role in maintenance of methylation at CpG dinucleotides by recruiting DNMT1 to hemimethylated sites associated with replication forks [2]. The SAD/SRA domain has been combined with other domains involved in the ubiquitin pathway on multiple occasions and such proteins link recognition of DNA methylation to chromatin-protein ubiquitination [4]. The domain is also found in species that lack DNA methylation, such as certain apicomplexans, suggestive of other DNA-binding modes or functions [4]. A highly derived and distinct version of the domain is also found in fungi where it is fused to AlkB-type 2OGFeDO domains [6]. In bacteria, the domain is usually fused or associated with restriction endonucleases, many of which target methylated or hemi-methylated DNA [4].	Domain
AA [auth E], B [auth 1], BA [auth F], C [auth 2], CA [auth G], AA [auth E], B [auth 1], BA [auth F], C [auth 2], CA [auth G], D [auth 3], DA [auth H], EA [auth I], EB [auth m], FA [auth J], GA [auth K], HA [auth L], K [auth A], KB [auth s], LB [auth t], MB [auth u], NB [auth v], OB [auth w], PB [auth x], QB [auth y], RB [auth z], X [auth B], Y [auth C], Z [auth D]	PF00628	PHD-finger (PHD)	PHD-finger	PHD folds into an interleaved type of Zn-finger chelating 2 Zn ions in a similar manner to that of the RING and FYVE domains [2]. Several PHD fingers have been identified as binding modules of methylated histone H3 [3].	Domain
AA [auth E], B [auth 1], BA [auth F], C [auth 2], CA [auth G], AA [auth E], B [auth 1], BA [auth F], C [auth 2], CA [auth G], D [auth 3], DA [auth H], EA [auth I], EB [auth m], FA [auth J], GA [auth K], HA [auth L], K [auth A], KB [auth s], LB [auth t], MB [auth u], NB [auth v], OB [auth w], PB [auth x], QB [auth y], RB [auth z], X [auth B], Y [auth C], Z [auth D]	PF00240	Ubiquitin family (ubiquitin)	Ubiquitin family	This family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue) (see Swiss:Q02724), Nedd8 (see Swiss:P29595), Elongin B (see Swiss:Q15370), Rub1 (see Swiss:Q9SHE7), and Parkin (see Swiss:O60260). A number of them are thought to carry ...	This family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue) (see Swiss:Q02724), Nedd8 (see Swiss:P29595), Elongin B (see Swiss:Q15370), Rub1 (see Swiss:Q9SHE7), and Parkin (see Swiss:O60260). A number of them are thought to carry a distinctive five-residue motif termed the proteasome-interacting motif (PIM), which may have a biologically significant role in protein delivery to proteasomes and recruitment of proteasomes to transcription sites [5].	Domain
AA [auth E], B [auth 1], BA [auth F], C [auth 2], CA [auth G], AA [auth E], B [auth 1], BA [auth F], C [auth 2], CA [auth G], D [auth 3], DA [auth H], EA [auth I], EB [auth m], FA [auth J], GA [auth K], HA [auth L], K [auth A], KB [auth s], LB [auth t], MB [auth u], NB [auth v], OB [auth w], PB [auth x], QB [auth y], RB [auth z], X [auth B], Y [auth C], Z [auth D]	PF08527	Protein-arginine deiminase (PAD) middle domain (PAD_M)	Protein-arginine deiminase (PAD) middle domain	This family represents the central non-catalytic domain of protein-arginine deiminase. This domain has an immunoglobulin-like fold.	Domain
AA [auth E], B [auth 1], BA [auth F], C [auth 2], CA [auth G], AA [auth E], B [auth 1], BA [auth F], C [auth 2], CA [auth G], D [auth 3], DA [auth H], EA [auth I], EB [auth m], FA [auth J], GA [auth K], HA [auth L], K [auth A], KB [auth s], LB [auth t], MB [auth u], NB [auth v], OB [auth w], PB [auth x], QB [auth y], RB [auth z], X [auth B], Y [auth C], Z [auth D]	PF03068	Protein-arginine deiminase (PAD) (PAD)	Protein-arginine deiminase (PAD)	-	Family
AA [auth E], B [auth 1], BA [auth F], C [auth 2], CA [auth G], AA [auth E], B [auth 1], BA [auth F], C [auth 2], CA [auth G], D [auth 3], DA [auth H], EA [auth I], EB [auth m], FA [auth J], GA [auth K], HA [auth L], K [auth A], KB [auth s], LB [auth t], MB [auth u], NB [auth v], OB [auth w], PB [auth x], QB [auth y], RB [auth z], X [auth B], Y [auth C], Z [auth D]	PF03953	Tubulin C-terminal domain (Tubulin_C)	Tubulin C-terminal domain	This family includes the tubulin alpha, beta and gamma chains. Members of this family are involved in polymer formation. Tubulins are GTPases. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria and archaea. Tub ...	This family includes the tubulin alpha, beta and gamma chains. Members of this family are involved in polymer formation. Tubulins are GTPases. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria and archaea. Tubulin is the major component of microtubules. (The FtsZ GTPases have been split into their won family).	Domain
AA [auth E], B [auth 1], BA [auth F], C [auth 2], CA [auth G], AA [auth E], B [auth 1], BA [auth F], C [auth 2], CA [auth G], D [auth 3], DA [auth H], EA [auth I], EB [auth m], FA [auth J], GA [auth K], HA [auth L], K [auth A], KB [auth s], LB [auth t], MB [auth u], NB [auth v], OB [auth w], PB [auth x], QB [auth y], RB [auth z], X [auth B], Y [auth C], Z [auth D]	PF01466	Skp1 family, dimerisation domain (Skp1)	Skp1 family, dimerisation domain		Domain
AA [auth E], B [auth 1], BA [auth F], C [auth 2], CA [auth G], AA [auth E], B [auth 1], BA [auth F], C [auth 2], CA [auth G], D [auth 3], DA [auth H], EA [auth I], EB [auth m], FA [auth J], GA [auth K], HA [auth L], K [auth A], KB [auth s], LB [auth t], MB [auth u], NB [auth v], OB [auth w], PB [auth x], QB [auth y], RB [auth z], X [auth B], Y [auth C], Z [auth D]	PF03931	Skp1 family, tetramerisation domain (Skp1_POZ)	Skp1 family, tetramerisation domain		Domain
AA [auth E], B [auth 1], BA [auth F], C [auth 2], CA [auth G], AA [auth E], B [auth 1], BA [auth F], C [auth 2], CA [auth G], D [auth 3], DA [auth H], EA [auth I], EB [auth m], FA [auth J], GA [auth K], HA [auth L], K [auth A], KB [auth s], LB [auth t], MB [auth u], NB [auth v], OB [auth w], PB [auth x], QB [auth y], RB [auth z], X [auth B], Y [auth C], Z [auth D]	PF00179	Ubiquitin-conjugating enzyme (UQ_con)	Ubiquitin-conjugating enzyme	Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. TSG101 is one of several UBC homologues that lacks this active site cystein ...	Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. TSG101 is one of several UBC homologues that lacks this active site cysteine [4, 5].	Domain
AA [auth E], B [auth 1], BA [auth F], C [auth 2], CA [auth G], AA [auth E], B [auth 1], BA [auth F], C [auth 2], CA [auth G], D [auth 3], DA [auth H], EA [auth I], EB [auth m], FA [auth J], GA [auth K], HA [auth L], K [auth A], KB [auth s], LB [auth t], MB [auth u], NB [auth v], OB [auth w], PB [auth x], QB [auth y], RB [auth z], X [auth B], Y [auth C], Z [auth D]	PF08526	Protein-arginine deiminase (PAD) N-terminal domain (PAD_N)	Protein-arginine deiminase (PAD) N-terminal domain	This family represents the N-terminal non-catalytic domain of protein-arginine deiminase. This domain has a cupredoxin-like fold.	Domain
GB [auth o], P [auth AH], WA [auth a]	PF12148	Tandem tudor domain within UHRF1 (TTD)	Tandem tudor domain within UHRF1	TTD, tandem tudor domain within UHRF1 preferentially binds H3 histone tails trimethylated at Lys-9. It specifically recognises H3 tail peptides with the heterochromatin-associated modification state of trimethylated lysine 9 and unmodified lysine 4 ( ...	TTD, tandem tudor domain within UHRF1 preferentially binds H3 histone tails trimethylated at Lys-9. It specifically recognises H3 tail peptides with the heterochromatin-associated modification state of trimethylated lysine 9 and unmodified lysine 4 (H3K4me0/K9me3). This domain is found in eukaryotes and is found in association with Pfam:PF00097, Pfam:PF02182, Pfam:PF00628, Pfam:PF00240.	Domain
GB [auth o], P [auth AH], WA [auth a]	PF02182	SAD/SRA domain (SAD_SRA)	SAD/SRA domain	The domain goes by several names including SAD [1], SRA [2] and YDG [3]. It adopts a beta barrel, modified PUA-like, fold that is widely present in eukaryotic chromatin proteins and in bacteria [4]. Versions of this domain are known to bind hemi-me ...	The domain goes by several names including SAD [1], SRA [2] and YDG [3]. It adopts a beta barrel, modified PUA-like, fold that is widely present in eukaryotic chromatin proteins and in bacteria [4]. Versions of this domain are known to bind hemi-methylated CpG dinucleotides and also other 5mC containing dinucleotides. The domain binds DNA by flipping out the methylated cytosine base from the DNA double helix [5].The conserved tyrosine and aspartate residues and a glycine rich patch are critical for recognition of the flipped out base [4][5]. Mammalian UHRF1 that contains this domain plays an important role in maintenance of methylation at CpG dinucleotides by recruiting DNMT1 to hemimethylated sites associated with replication forks [2]. The SAD/SRA domain has been combined with other domains involved in the ubiquitin pathway on multiple occasions and such proteins link recognition of DNA methylation to chromatin-protein ubiquitination [4]. The domain is also found in species that lack DNA methylation, such as certain apicomplexans, suggestive of other DNA-binding modes or functions [4]. A highly derived and distinct version of the domain is also found in fungi where it is fused to AlkB-type 2OGFeDO domains [6]. In bacteria, the domain is usually fused or associated with restriction endonucleases, many of which target methylated or hemi-methylated DNA [4].	Domain
GB [auth o], P [auth AH], WA [auth a]	PF00628	PHD-finger (PHD)	PHD-finger	PHD folds into an interleaved type of Zn-finger chelating 2 Zn ions in a similar manner to that of the RING and FYVE domains [2]. Several PHD fingers have been identified as binding modules of methylated histone H3 [3].	Domain
GB [auth o], P [auth AH], WA [auth a]	PF00240	Ubiquitin family (ubiquitin)	Ubiquitin family	This family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue) (see Swiss:Q02724), Nedd8 (see Swiss:P29595), Elongin B (see Swiss:Q15370), Rub1 (see Swiss:Q9SHE7), and Parkin (see Swiss:O60260). A number of them are thought to carry ...	This family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue) (see Swiss:Q02724), Nedd8 (see Swiss:P29595), Elongin B (see Swiss:Q15370), Rub1 (see Swiss:Q9SHE7), and Parkin (see Swiss:O60260). A number of them are thought to carry a distinctive five-residue motif termed the proteasome-interacting motif (PIM), which may have a biologically significant role in protein delivery to proteasomes and recruitment of proteasomes to transcription sites [5].	Domain
HB [auth p], Q [auth AI], XA [auth b]	PF00179	Ubiquitin-conjugating enzyme (UQ_con)	Ubiquitin-conjugating enzyme	Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. TSG101 is one of several UBC homologues that lacks this active site cystein ...	Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. TSG101 is one of several UBC homologues that lacks this active site cysteine [4, 5].	Domain
IB [auth q], R [auth AJ], YA [auth c]	PF00091	Tubulin/FtsZ family, GTPase domain (Tubulin)	Tubulin/FtsZ family, GTPase domain	This family includes the tubulin alpha, beta and gamma chains, as well as the bacterial FtsZ family of proteins. Members of this family are involved in polymer formation. FtsZ is the polymer-forming protein of bacterial cell division. It is part of a ...	This family includes the tubulin alpha, beta and gamma chains, as well as the bacterial FtsZ family of proteins. Members of this family are involved in polymer formation. FtsZ is the polymer-forming protein of bacterial cell division. It is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria and archaea. Tubulin is the major component of microtubules.	Domain
IB [auth q], R [auth AJ], YA [auth c]	PF03953	Tubulin C-terminal domain (Tubulin_C)	Tubulin C-terminal domain	This family includes the tubulin alpha, beta and gamma chains. Members of this family are involved in polymer formation. Tubulins are GTPases. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria and archaea. Tub ...	This family includes the tubulin alpha, beta and gamma chains. Members of this family are involved in polymer formation. Tubulins are GTPases. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria and archaea. Tubulin is the major component of microtubules. (The FtsZ GTPases have been split into their won family).	Domain
JB [auth r], S [auth AK], ZA [auth d]	PF00091	Tubulin/FtsZ family, GTPase domain (Tubulin)	Tubulin/FtsZ family, GTPase domain	This family includes the tubulin alpha, beta and gamma chains, as well as the bacterial FtsZ family of proteins. Members of this family are involved in polymer formation. FtsZ is the polymer-forming protein of bacterial cell division. It is part of a ...	This family includes the tubulin alpha, beta and gamma chains, as well as the bacterial FtsZ family of proteins. Members of this family are involved in polymer formation. FtsZ is the polymer-forming protein of bacterial cell division. It is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria and archaea. Tubulin is the major component of microtubules.	Domain
JB [auth r], S [auth AK], ZA [auth d]	PF03953	Tubulin C-terminal domain (Tubulin_C)	Tubulin C-terminal domain	This family includes the tubulin alpha, beta and gamma chains. Members of this family are involved in polymer formation. Tubulins are GTPases. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria and archaea. Tub ...	This family includes the tubulin alpha, beta and gamma chains. Members of this family are involved in polymer formation. Tubulins are GTPases. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria and archaea. Tubulin is the major component of microtubules. (The FtsZ GTPases have been split into their won family).	Domain
BB [auth f], DB [auth h], U [auth AM], W [auth AO]	PF01466	Skp1 family, dimerisation domain (Skp1)	Skp1 family, dimerisation domain		Domain
BB [auth f], DB [auth h], U [auth AM], W [auth AO]	PF03931	Skp1 family, tetramerisation domain (Skp1_POZ)	Skp1 family, tetramerisation domain		Domain
QA [auth U], RA [auth V], SA [auth W]	PF00240	Ubiquitin family (ubiquitin)	Ubiquitin family	This family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue) (see Swiss:Q02724), Nedd8 (see Swiss:P29595), Elongin B (see Swiss:Q15370), Rub1 (see Swiss:Q9SHE7), and Parkin (see Swiss:O60260). A number of them are thought to carry ...	This family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue) (see Swiss:Q02724), Nedd8 (see Swiss:P29595), Elongin B (see Swiss:Q15370), Rub1 (see Swiss:Q9SHE7), and Parkin (see Swiss:O60260). A number of them are thought to carry a distinctive five-residue motif termed the proteasome-interacting motif (PIM), which may have a biologically significant role in protein delivery to proteasomes and recruitment of proteasomes to transcription sites [5].	Domain
QA [auth U], RA [auth V], SA [auth W]	PF08526	Protein-arginine deiminase (PAD) N-terminal domain (PAD_N)	Protein-arginine deiminase (PAD) N-terminal domain	This family represents the N-terminal non-catalytic domain of protein-arginine deiminase. This domain has a cupredoxin-like fold.	Domain
FB [auth n], O [auth AG], VA [auth Z]	PF05729	NACHT domain (NACHT)	NACHT domain	This NTPase domain is found in apoptosis proteins as well as those involved in MHC transcription activation [1]. This family is closely related to Pfam:PF00931.	Domain
FB [auth n], O [auth AG], VA [auth Z]	PF13516	Leucine Rich repeat (LRR_6)	Leucine Rich repeat	-	Repeat
FB [auth n], O [auth AG], VA [auth Z]	PF17776	NLRC4 helical domain HD2 (NLRC4_HD2)	NLRC4 helical domain HD2	This entry represents a helical domain found in the NLRC4 protein [2] and NOD2 protein [1].	Domain
FB [auth n], O [auth AG], VA [auth Z]	PF08527	Protein-arginine deiminase (PAD) middle domain (PAD_M)	Protein-arginine deiminase (PAD) middle domain	This family represents the central non-catalytic domain of protein-arginine deiminase. This domain has an immunoglobulin-like fold.	Domain
FB [auth n], O [auth AG], VA [auth Z]	PF03068	Protein-arginine deiminase (PAD) (PAD)	Protein-arginine deiminase (PAD)	-	Family
FB [auth n], O [auth AG], VA [auth Z]	PF17779	NOD2 winged helix domain (WHD_NOD2)	NOD2 winged helix domain	This winged helix domain is found in the NOD2 protein [1]. Its molecular function is not known.	Domain
FB [auth n], O [auth AG], VA [auth Z]	PF08526	Protein-arginine deiminase (PAD) N-terminal domain (PAD_N)	Protein-arginine deiminase (PAD) N-terminal domain	This family represents the N-terminal non-catalytic domain of protein-arginine deiminase. This domain has a cupredoxin-like fold.	Domain
M [auth AE], N [auth AF], TA [auth X], UA [auth Y]	PF05729	NACHT domain (NACHT)	NACHT domain	This NTPase domain is found in apoptosis proteins as well as those involved in MHC transcription activation [1]. This family is closely related to Pfam:PF00931.	Domain
M [auth AE], N [auth AF], TA [auth X], UA [auth Y]	PF13516	Leucine Rich repeat (LRR_6)	Leucine Rich repeat	-	Repeat
M [auth AE], N [auth AF], TA [auth X], UA [auth Y]	PF02758	PAAD/DAPIN/Pyrin domain (PYRIN)	PAAD/DAPIN/Pyrin domain	This domain is predicted to contain 6 alpha helices and to have the same fold as the Pfam:PF00531 domain. This similarity may mean that this is a protein-protein interaction domain.	Domain
M [auth AE], N [auth AF], TA [auth X], UA [auth Y]	PF17776	NLRC4 helical domain HD2 (NLRC4_HD2)	NLRC4 helical domain HD2	This entry represents a helical domain found in the NLRC4 protein [2] and NOD2 protein [1].	Domain
M [auth AE], N [auth AF], TA [auth X], UA [auth Y]	PF08527	Protein-arginine deiminase (PAD) middle domain (PAD_M)	Protein-arginine deiminase (PAD) middle domain	This family represents the central non-catalytic domain of protein-arginine deiminase. This domain has an immunoglobulin-like fold.	Domain
M [auth AE], N [auth AF], TA [auth X], UA [auth Y]	PF03068	Protein-arginine deiminase (PAD) (PAD)	Protein-arginine deiminase (PAD)	-	Family
M [auth AE], N [auth AF], TA [auth X], UA [auth Y]	PF17779	NOD2 winged helix domain (WHD_NOD2)	NOD2 winged helix domain	This winged helix domain is found in the NOD2 protein [1]. Its molecular function is not known.	Domain
M [auth AE], N [auth AF], TA [auth X], UA [auth Y]	PF08526	Protein-arginine deiminase (PAD) N-terminal domain (PAD_N)	Protein-arginine deiminase (PAD) N-terminal domain	This family represents the N-terminal non-catalytic domain of protein-arginine deiminase. This domain has a cupredoxin-like fold.	Domain
L [auth AA], PA [auth T]	PF08527	Protein-arginine deiminase (PAD) middle domain (PAD_M)	Protein-arginine deiminase (PAD) middle domain	This family represents the central non-catalytic domain of protein-arginine deiminase. This domain has an immunoglobulin-like fold.	Domain
L [auth AA], PA [auth T]	PF08526	Protein-arginine deiminase (PAD) N-terminal domain (PAD_N)	Protein-arginine deiminase (PAD) N-terminal domain	This family represents the N-terminal non-catalytic domain of protein-arginine deiminase. This domain has a cupredoxin-like fold.	Domain
G [auth 6], J [auth 9], KA [auth O], NA [auth R]	PF12148	Tandem tudor domain within UHRF1 (TTD)	Tandem tudor domain within UHRF1	TTD, tandem tudor domain within UHRF1 preferentially binds H3 histone tails trimethylated at Lys-9. It specifically recognises H3 tail peptides with the heterochromatin-associated modification state of trimethylated lysine 9 and unmodified lysine 4 ( ...	TTD, tandem tudor domain within UHRF1 preferentially binds H3 histone tails trimethylated at Lys-9. It specifically recognises H3 tail peptides with the heterochromatin-associated modification state of trimethylated lysine 9 and unmodified lysine 4 (H3K4me0/K9me3). This domain is found in eukaryotes and is found in association with Pfam:PF00097, Pfam:PF02182, Pfam:PF00628, Pfam:PF00240.	Domain
G [auth 6], J [auth 9], KA [auth O], NA [auth R]	PF00091	Tubulin/FtsZ family, GTPase domain (Tubulin)	Tubulin/FtsZ family, GTPase domain	This family includes the tubulin alpha, beta and gamma chains, as well as the bacterial FtsZ family of proteins. Members of this family are involved in polymer formation. FtsZ is the polymer-forming protein of bacterial cell division. It is part of a ...	This family includes the tubulin alpha, beta and gamma chains, as well as the bacterial FtsZ family of proteins. Members of this family are involved in polymer formation. FtsZ is the polymer-forming protein of bacterial cell division. It is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria and archaea. Tubulin is the major component of microtubules.	Domain
G [auth 6], J [auth 9], KA [auth O], NA [auth R]	PF00240	Ubiquitin family (ubiquitin)	Ubiquitin family	This family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue) (see Swiss:Q02724), Nedd8 (see Swiss:P29595), Elongin B (see Swiss:Q15370), Rub1 (see Swiss:Q9SHE7), and Parkin (see Swiss:O60260). A number of them are thought to carry ...	This family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue) (see Swiss:Q02724), Nedd8 (see Swiss:P29595), Elongin B (see Swiss:Q15370), Rub1 (see Swiss:Q9SHE7), and Parkin (see Swiss:O60260). A number of them are thought to carry a distinctive five-residue motif termed the proteasome-interacting motif (PIM), which may have a biologically significant role in protein delivery to proteasomes and recruitment of proteasomes to transcription sites [5].	Domain
G [auth 6], J [auth 9], KA [auth O], NA [auth R]	PF16005	KH-like RNA-binding domain (MOEP19)	KH-like RNA-binding domain	MOEP19 is a family of mammalian KH-like RNA-binding motifs. The family is expressed during early embryogenesis. It appears to effect an early form of molecular asymmetry within the murine oocyte cytoplasm. The family marks a defined cortical cytoplas ...	MOEP19 is a family of mammalian KH-like RNA-binding motifs. The family is expressed during early embryogenesis. It appears to effect an early form of molecular asymmetry within the murine oocyte cytoplasm. The family marks a defined cortical cytoplasmic domain in oocytes and provides evidence for mammalian oocyte polarity and a form of pre-patterning that persists in zygotes and early embryos through the morula stage [1].	Domain
F [auth 5], I [auth 8], JA [auth N], MA [auth Q]	PF05729	NACHT domain (NACHT)	NACHT domain	This NTPase domain is found in apoptosis proteins as well as those involved in MHC transcription activation [1]. This family is closely related to Pfam:PF00931.	Domain
F [auth 5], I [auth 8], JA [auth N], MA [auth Q]	PF00091	Tubulin/FtsZ family, GTPase domain (Tubulin)	Tubulin/FtsZ family, GTPase domain	This family includes the tubulin alpha, beta and gamma chains, as well as the bacterial FtsZ family of proteins. Members of this family are involved in polymer formation. FtsZ is the polymer-forming protein of bacterial cell division. It is part of a ...	This family includes the tubulin alpha, beta and gamma chains, as well as the bacterial FtsZ family of proteins. Members of this family are involved in polymer formation. FtsZ is the polymer-forming protein of bacterial cell division. It is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria and archaea. Tubulin is the major component of microtubules.	Domain
F [auth 5], I [auth 8], JA [auth N], MA [auth Q]	PF17776	NLRC4 helical domain HD2 (NLRC4_HD2)	NLRC4 helical domain HD2	This entry represents a helical domain found in the NLRC4 protein [2] and NOD2 protein [1].	Domain
F [auth 5], I [auth 8], JA [auth N], MA [auth Q]	PF03953	Tubulin C-terminal domain (Tubulin_C)	Tubulin C-terminal domain	This family includes the tubulin alpha, beta and gamma chains. Members of this family are involved in polymer formation. Tubulins are GTPases. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria and archaea. Tub ...	This family includes the tubulin alpha, beta and gamma chains. Members of this family are involved in polymer formation. Tubulins are GTPases. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria and archaea. Tubulin is the major component of microtubules. (The FtsZ GTPases have been split into their won family).	Domain
F [auth 5], I [auth 8], JA [auth N], MA [auth Q]	PF17779	NOD2 winged helix domain (WHD_NOD2)	NOD2 winged helix domain	This winged helix domain is found in the NOD2 protein [1]. Its molecular function is not known.	Domain
E [auth 4], H [auth 7], IA [auth M], LA [auth P]	PF05729	NACHT domain (NACHT)	NACHT domain	This NTPase domain is found in apoptosis proteins as well as those involved in MHC transcription activation [1]. This family is closely related to Pfam:PF00931.	Domain
E [auth 4], H [auth 7], IA [auth M], LA [auth P]	PF13516	Leucine Rich repeat (LRR_6)	Leucine Rich repeat	-	Repeat
E [auth 4], H [auth 7], IA [auth M], LA [auth P]	PF17776	NLRC4 helical domain HD2 (NLRC4_HD2)	NLRC4 helical domain HD2	This entry represents a helical domain found in the NLRC4 protein [2] and NOD2 protein [1].	Domain
E [auth 4], H [auth 7], IA [auth M], LA [auth P]	PF08527	Protein-arginine deiminase (PAD) middle domain (PAD_M)	Protein-arginine deiminase (PAD) middle domain	This family represents the central non-catalytic domain of protein-arginine deiminase. This domain has an immunoglobulin-like fold.	Domain
E [auth 4], H [auth 7], IA [auth M], LA [auth P]	PF03068	Protein-arginine deiminase (PAD) (PAD)	Protein-arginine deiminase (PAD)	-	Family
E [auth 4], H [auth 7], IA [auth M], LA [auth P]	PF00179	Ubiquitin-conjugating enzyme (UQ_con)	Ubiquitin-conjugating enzyme	Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. TSG101 is one of several UBC homologues that lacks this active site cystein ...	Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. TSG101 is one of several UBC homologues that lacks this active site cysteine [4, 5].	Domain
E [auth 4], H [auth 7], IA [auth M], LA [auth P]	PF17779	NOD2 winged helix domain (WHD_NOD2)	NOD2 winged helix domain	This winged helix domain is found in the NOD2 protein [1]. Its molecular function is not known.	Domain
E [auth 4], H [auth 7], IA [auth M], LA [auth P]	PF08526	Protein-arginine deiminase (PAD) N-terminal domain (PAD_N)	Protein-arginine deiminase (PAD) N-terminal domain	This family represents the N-terminal non-catalytic domain of protein-arginine deiminase. This domain has a cupredoxin-like fold.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth 0], OA [auth S]	KH domain-containing protein 3	RNA binding binding nucleic acid binding structural molecule activity structural constituent of cytoplasmic lattice	cellular response to stimulus regulation of cellular process response to stimulus regulation of double-strand break repair positive regulation of biological process regulation of cellular response to stress regulation of primary metabolic process positive regulation of response to stimulus nucleobase-containing compound metabolic process positive regulation of metabolic process positive regulation of DNA repair cellular response to stress response to stress regulation of response to stress cellular response to stimulus regulation of cellular process response to stimulus regulation of double-strand break repair positive regulation of biological process regulation of cellular response to stress regulation of primary metabolic process positive regulation of response to stimulus nucleobase-containing compound metabolic process positive regulation of metabolic process positive regulation of DNA repair cellular response to stress response to stress regulation of response to stress positive regulation of macromolecule metabolic process regulation of nucleobase-containing compound metabolic process positive regulation of cellular process DNA repair double-strand break repair regulation of biological process biological regulation primary metabolic process DNA metabolic process regulation of macromolecule metabolic process positive regulation of double-strand break repair nucleic acid metabolic process regulation of DNA repair positive regulation of DNA metabolic process regulation of response to stimulus DNA damage response metabolic process cellular process macromolecule metabolic process regulation of metabolic process regulation of DNA metabolic process DNA-templated DNA replication DNA-templated DNA replication maintenance of fidelity DNA replication replication fork processing protein storage nutrient storage negative regulation of programmed cell death regulation of apoptotic process negative regulation of biological process regulation of programmed cell death cell death negative regulation of apoptotic process negative regulation of cellular process apoptotic process programmed cell death regulation of cell cycle phase transition spindle checkpoint signaling negative regulation of cell cycle regulation of mitotic nuclear division intracellular signal transduction negative regulation of mitotic cell cycle cell communication negative regulation of mitotic sister chromatid segregation negative regulation of chromosome organization negative regulation of cell cycle phase transition mitotic spindle checkpoint signaling signal transduction cell cycle mitotic sister chromatid separation chromosome segregation negative regulation of sister chromatid segregation mitotic spindle assembly checkpoint signaling negative regulation of cellular component organization regulation of cell cycle process sister chromatid segregation regulation of chromosome organization regulation of organelle organization regulation of mitotic cell cycle phase transition regulation of mitotic sister chromatid segregation mitotic cell cycle process regulation of chromosome separation negative regulation of mitotic nuclear division regulation of chromosome segregation regulation of cellular component organization regulation of mitotic sister chromatid separation regulation of metaphase/anaphase transition of cell cycle signaling spindle assembly checkpoint signaling cell cycle phase transition regulation of mitotic metaphase/anaphase transition mitotic cell cycle cellular component organization regulation of mitotic cell cycle mitotic sister chromatid segregation negative regulation of mitotic metaphase/anaphase transition cellular component organization or biogenesis regulation of cell cycle negative regulation of chromosome separation cell cycle process mitotic nuclear division negative regulation of mitotic cell cycle phase transition organelle fission chromosome organization negative regulation of cell cycle process cell cycle checkpoint signaling mitotic cell cycle checkpoint signaling organelle organization nuclear division negative regulation of chromosome segregation negative regulation of nuclear division negative regulation of organelle organization chromosome separation regulation of sister chromatid segregation negative regulation of mitotic sister chromatid separation regulation of nuclear division negative regulation of metaphase/anaphase transition of cell cycle nuclear chromosome segregation metaphase/anaphase transition of mitotic cell cycle metaphase/anaphase transition of cell cycle mitotic cell cycle phase transition regulation of DNA recombination positive regulation of double-strand break repair via homologous recombination recombinational repair double-strand break repair via homologous recombination positive regulation of DNA recombination DNA recombination regulation of double-strand break repair via homologous recombination protein phosphorylation phosphorylation macromolecule modification phosphate-containing compound metabolic process protein metabolic process protein modification process regulation of localization localization regulation of protein localization macromolecule localization intracellular protein localization regulation of neuron projection development multicellular organismal process positive regulation of cellular component organization regulation of developmental process cellular developmental process cell projection organization cell development neuron projection development positive regulation of developmental process neurogenesis multicellular organism development neuron differentiation dendrite development positive regulation of neuron projection development cell differentiation anatomical structure development positive regulation of cell projection organization system development developmental process plasma membrane bounded cell projection organization regulation of cell projection organization positive regulation of dendrite development nervous system development generation of neurons regulation of dendrite development neuron development animal gross anatomical part developmental process regulation of plasma membrane bounded cell projection organization microtubule cytoskeleton organization membraneless organelle assembly cellular component biogenesis cellular component assembly microtubule cytoskeleton organization involved in mitosis spindle organization organelle assembly spindle assembly mitotic spindle organization mitotic spindle assembly microtubule-based process cytoskeleton organization regulation of embryonic development regulation of multicellular organismal development embryo development positive regulation of embryonic development positive regulation of multicellular organismal process regulation of multicellular organismal process positive regulation of nervous system development regulation of cell differentiation regulation of neurogenesis regulation of cell development regulation of nervous system development positive regulation of cell differentiation positive regulation of neurogenesis positive regulation of cell development establishment of organelle localization organelle localization establishment of localization actin cytoskeleton organization actin filament organization actin filament-based process supramolecular fiber organization	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle cytoplasmic lattice ooplasm membraneless organelle intracellular membraneless organelle cell periphery cell cortex membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle cytoplasmic lattice ooplasm membraneless organelle intracellular membraneless organelle cell periphery cell cortex centrosome microtubule organizing center cytoskeleton microtubule cytoskeleton protein-containing complex subcortical maternal complex chromosome cell cortex region cytoplasmic region apical cortex nucleus
AA [auth E], B [auth 1], BA [auth F], C [auth 2], CA [auth G], AA [auth E], B [auth 1], BA [auth F], C [auth 2], CA [auth G], D [auth 3], DA [auth H], EA [auth I], EB [auth m], FA [auth J], GA [auth K], HA [auth L], K [auth A], KB [auth s], LB [auth t], MB [auth u], NB [auth v], OB [auth w], PB [auth x], QB [auth y], RB [auth z], X [auth B], Y [auth C], Z [auth D]	Inactive protein-arginine deiminase type-6	cation binding ion binding binding calcium ion binding metal ion binding small molecule binding cytoskeletal protein binding protein binding tubulin binding structural molecule activity structural constituent of cytoplasmic lattice identical protein binding	developmental process multicellular organism development multicellular organismal process embryonic cleavage anatomical structure development cellular process cell division embryo development protein storage nutrient storage embryo development ending in birth or egg hatching chordate embryonic development in utero embryonic development animal gross anatomical part developmental process developmental process multicellular organism development multicellular organismal process embryonic cleavage anatomical structure development cellular process cell division embryo development protein storage nutrient storage embryo development ending in birth or egg hatching chordate embryonic development in utero embryonic development animal gross anatomical part developmental process cellular component organization organelle organization cellular component organization or biogenesis cytoskeleton organization regulation of biosynthetic process epigenetic programming of gene expression regulation of biological process regulation of cellular process epigenetic programming in the zygotic pronuclei epigenetic regulation of gene expression biological regulation regulation of macromolecule metabolic process gene expression macromolecule biosynthetic process regulation of gene expression biosynthetic process chromatin organization chromatin remodeling regulation of macromolecule biosynthetic process metabolic process macromolecule metabolic process regulation of metabolic process protein biosynthetic process regulation of primary metabolic process post-transcriptional regulation of gene expression localization regulation of translation by machinery localization protein metabolic process intracellular protein localization regulation of protein metabolic process primary metabolic process translation regulation of translation macromolecule localization cytoplasm organization	cytoplasmic lattice ooplasm intracellular organelle cellular anatomical structure intracellular anatomical structure organelle membraneless organelle intracellular membraneless organelle cytoplasm membrane-bounded organelle intracellular vesicle intracellular membrane-bounded organelle endomembrane system cytoplasmic vesicle cytoplasmic lattice ooplasm intracellular organelle cellular anatomical structure intracellular anatomical structure organelle membraneless organelle intracellular membraneless organelle cytoplasm membrane-bounded organelle intracellular vesicle intracellular membrane-bounded organelle endomembrane system cytoplasmic vesicle secretory granule secretory vesicle vesicle cortical granule cytoskeleton intermediate filament cytoskeleton nucleus
GB [auth o], P [auth AH], WA [auth a]	E3 ubiquitin-protein ligase UHRF1	histone H3K9me2/3 reader activity histone reader activity histone H3 reader activity chromatin-protein adaptor activity protein-macromolecule adaptor activity molecular adaptor activity binding nucleic acid binding protein binding histone binding aminoacyltransferase activity catalytic activity, acting on a protein acyltransferase activity transferase activity histone H3K9me2/3 reader activity histone reader activity histone H3 reader activity chromatin-protein adaptor activity protein-macromolecule adaptor activity molecular adaptor activity binding nucleic acid binding protein binding histone binding aminoacyltransferase activity catalytic activity, acting on a protein acyltransferase activity transferase activity histone ubiquitin ligase activity ubiquitin-protein transferase activity ubiquitin-like protein transferase activity histone H3K14 ubiquitin ligase activity histone H3 ubiquitin ligase activity ubiquitin-like protein ligase activity ubiquitin protein ligase activity histone modifying activity catalytic activity DNA binding sequence-specific DNA binding sequence-specific double-stranded DNA binding transcription cis-regulatory region binding double-stranded DNA binding cis-regulatory region sequence-specific DNA binding transcription regulatory region nucleic acid binding nucleoside phosphate binding nucleotide binding heterocyclic compound binding methyl-CpG binding small molecule binding hemi-methylated DNA-binding identical protein binding cation binding transition metal ion binding zinc ion binding ion binding metal ion binding histone H3K23 ubiquitin ligase activity histone H3K18 ubiquitin ligase activity	protein autoubiquitination primary metabolic process protein ubiquitination macromolecule modification metabolic process cellular process protein metabolic process macromolecule metabolic process post-translational protein modification protein modification process protein modification by small protein conjugation protein modification by small protein conjugation or removal RNA metabolic process nucleobase-containing compound biosynthetic process protein autoubiquitination primary metabolic process protein ubiquitination macromolecule modification metabolic process cellular process protein metabolic process macromolecule metabolic process post-translational protein modification protein modification process protein modification by small protein conjugation protein modification by small protein conjugation or removal RNA metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process biosynthetic process catabolic process protein catabolic process macromolecule catabolic process modification-dependent macromolecule catabolic process modification-dependent protein catabolic process ubiquitin-dependent protein catabolic process cellular component organization chromatin organization cellular component organization or biogenesis chromosomal DNA methylation maintenance following DNA replication cellular response to stimulus response to stimulus DNA metabolic process cellular response to stress DNA damage response response to stress DNA repair regulation of cellular process negative regulation of biological process regulation of primary metabolic process negative regulation of RNA biosynthetic process regulation of RNA metabolic process transcription by RNA polymerase II negative regulation of cellular process negative regulation of nucleobase-containing compound metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process negative regulation of macromolecule metabolic process regulation of biosynthetic process regulation of transcription by RNA polymerase II negative regulation of DNA-templated transcription regulation of biological process negative regulation of transcription by RNA polymerase II negative regulation of metabolic process biological regulation regulation of macromolecule metabolic process regulation of gene expression negative regulation of biosynthetic process negative regulation of macromolecule biosynthetic process regulation of macromolecule biosynthetic process regulation of DNA-templated transcription regulation of metabolic process negative regulation of RNA metabolic process positive regulation of DNA-templated transcription positive regulation of biological process positive regulation of macromolecule biosynthetic process positive regulation of metabolic process positive regulation of biosynthetic process positive regulation of macromolecule metabolic process positive regulation of cellular process positive regulation of transcription by RNA polymerase II positive regulation of RNA metabolic process positive regulation of RNA biosynthetic process positive regulation of protein metabolic process regulation of protein metabolic process negative regulation of gene expression via chromosomal CpG island methylation chromatin remodeling epigenetic regulation of gene expression negative regulation of gene expression negative regulation of gene expression, epigenetic localization protein localization to chromatin protein localization to chromosome protein localization to organelle macromolecule localization intracellular protein localization cell population proliferation regulation of cell population proliferation regulation of epithelial cell proliferation epithelial cell proliferation cellular component biogenesis cellular component assembly heterochromatin formation heterochromatin organization microtubule cytoskeleton organization membraneless organelle assembly mitotic cell cycle mitotic sister chromatid segregation cell cycle chromosome segregation microtubule cytoskeleton organization involved in mitosis spindle organization cell cycle process mitotic nuclear division organelle assembly organelle fission chromosome organization sister chromatid segregation spindle assembly mitotic spindle organization mitotic spindle assembly organelle organization nuclear division mitotic cell cycle process nuclear chromosome segregation microtubule-based process cytoskeleton organization	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol intracellular organelle organelle membraneless organelle intracellular membraneless organelle chromatin chromosome heterochromatin membrane-bounded organelle nucleus membrane-enclosed lumen cellular anatomical structure intracellular anatomical structure cytoplasm cytosol intracellular organelle organelle membraneless organelle intracellular membraneless organelle chromatin chromosome heterochromatin membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen organelle lumen nuclear lumen nuclear matrix nucleoplasm replication fork euchromatin
HB [auth p], Q [auth AI], XA [auth b]	Ubiquitin-conjugating enzyme E2 D3	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding ubiquitin conjugating enzyme activity aminoacyltransferase activity ubiquitin-like protein transferase activity catalytic activity, acting on a protein acyltransferase activity ubiquitin-like protein conjugating enzyme activity transferase activity catalytic activity ubiquitin-protein transferase activity	protein K6-linked ubiquitination protein polyubiquitination primary metabolic process protein ubiquitination macromolecule modification metabolic process cellular process protein metabolic process macromolecule metabolic process post-translational protein modification protein modification process protein modification by small protein conjugation protein modification by small protein conjugation or removal catabolic process protein K6-linked ubiquitination protein polyubiquitination primary metabolic process protein ubiquitination macromolecule modification metabolic process cellular process protein metabolic process macromolecule metabolic process post-translational protein modification protein modification process protein modification by small protein conjugation protein modification by small protein conjugation or removal catabolic process protein catabolic process macromolecule catabolic process modification-dependent macromolecule catabolic process modification-dependent protein catabolic process ubiquitin-dependent protein catabolic process cellular response to stimulus response to stimulus DNA metabolic process nucleic acid metabolic process nucleobase-containing compound metabolic process cellular response to stress DNA damage response response to stress DNA repair protein K11-linked ubiquitination protein K48-linked ubiquitination apoptotic process cell death programmed cell death protein autoubiquitination protein monoubiquitination proteasomal protein catabolic process proteasome-mediated ubiquitin-dependent protein catabolic process	endosome membrane membrane-bounded organelle intracellular anatomical structure membrane endosome intracellular vesicle intracellular membrane-bounded organelle endomembrane system intracellular organelle cytoplasmic vesicle membrane cellular anatomical structure bounding membrane of organelle vesicle membrane cytoplasmic vesicle endosome membrane membrane-bounded organelle intracellular anatomical structure membrane endosome intracellular vesicle intracellular membrane-bounded organelle endomembrane system intracellular organelle cytoplasmic vesicle membrane cellular anatomical structure bounding membrane of organelle vesicle membrane cytoplasmic vesicle organelle cytoplasm vesicle organelle membrane cell periphery plasma membrane nucleus
IB [auth q], R [auth AJ], YA [auth c]	Tubulin alpha-1C chain	structural constituent of cytoskeleton structural molecule activity hydrolase activity catalytic activity binding guanyl nucleotide binding GTP binding nucleotide binding guanyl ribonucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding structural constituent of cytoskeleton structural molecule activity hydrolase activity catalytic activity binding guanyl nucleotide binding GTP binding nucleotide binding guanyl ribonucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding cation binding metal ion binding	cellular process cell cycle mitotic cell cycle cellular component organization organelle organization microtubule cytoskeleton organization microtubule-based process cellular component organization or biogenesis cytoskeleton organization developmental process multicellular organismal process cellular developmental process nervous system development generation of neurons cellular process cell cycle mitotic cell cycle cellular component organization organelle organization microtubule cytoskeleton organization microtubule-based process cellular component organization or biogenesis cytoskeleton organization developmental process multicellular organismal process cellular developmental process nervous system development generation of neurons neurogenesis multicellular organism development neuron differentiation cell differentiation anatomical structure development animal gross anatomical part developmental process system development	membrane-bounded organelle cell projection cellular anatomical structure organelle cilium plasma membrane bounded cell projection polymeric cytoskeletal fiber intracellular anatomical structure intracellular membraneless organelle cytoplasmic microtubule intracellular organelle cytoskeleton membraneless organelle cytoplasm membrane-bounded organelle cell projection cellular anatomical structure organelle cilium plasma membrane bounded cell projection polymeric cytoskeletal fiber intracellular anatomical structure intracellular membraneless organelle cytoplasmic microtubule intracellular organelle cytoskeleton membraneless organelle cytoplasm supramolecular fiber microtubule supramolecular polymer supramolecular complex microtubule cytoskeleton membrane microdomain membrane raft membrane nucleus intracellular membrane-bounded organelle
JB [auth r], S [auth AK], ZA [auth d]	Tubulin beta-4B chain	RNA binding double-stranded RNA binding binding nucleic acid binding guanyl nucleotide binding GTP binding nucleotide binding guanyl ribonucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding RNA binding double-stranded RNA binding binding nucleic acid binding guanyl nucleotide binding GTP binding nucleotide binding guanyl ribonucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding structural constituent of cytoskeleton structural molecule activity cation binding metal ion binding pyrophosphatase activity GTPase activity ribonucleoside triphosphate phosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity hydrolase activity, acting on acid anhydrides catalytic activity	cellular process cell cycle mitotic cell cycle sperm motility reproductive process cilium movement involved in cell motility cilium or flagellum-dependent cell motility cilium-dependent cell motility flagellated sperm motility microtubule-based movement microtubule-based process cilium movement cell motility cellular component organization cellular process cell cycle mitotic cell cycle sperm motility reproductive process cilium movement involved in cell motility cilium or flagellum-dependent cell motility cilium-dependent cell motility flagellated sperm motility microtubule-based movement microtubule-based process cilium movement cell motility cellular component organization organelle organization microtubule cytoskeleton organization cellular component organization or biogenesis cytoskeleton organization	cellular anatomical structure myelin sheath polymeric cytoskeletal fiber membrane-bounded organelle intracellular anatomical structure axoneme ciliary plasm axonemal microtubule intracellular membraneless organelle cilium cytoplasmic microtubule plasma membrane bounded cell projection intracellular organelle cell projection cellular anatomical structure myelin sheath polymeric cytoskeletal fiber membrane-bounded organelle intracellular anatomical structure axoneme ciliary plasm axonemal microtubule intracellular membraneless organelle cilium cytoplasmic microtubule plasma membrane bounded cell projection intracellular organelle cell projection cytoskeleton organelle membraneless organelle cytoplasm supramolecular fiber microtubule supramolecular polymer supramolecular complex microtubule cytoskeleton protein-containing complex tubulin complex 9+2 motile cilium sperm flagellum motile cilium mitotic spindle spindle intercellular bridge
AB [auth e], CB [auth g], T [auth AL], V [auth AN]	F-box/WD repeat-containing protein	-	-	-
BB [auth f], DB [auth h], U [auth AM], W [auth AO]	S-phase kinase-associated protein 1	protein complex scaffold activity ubiquitin ligase complex scaffold activity structural molecule activity protein binding binding protein domain specific binding enzyme regulator activity ubiquitin ligase activator activity enzyme activator activity ubiquitin-protein transferase regulator activity molecular function activator activity molecular function regulator activity ubiquitin-protein transferase activator activity cullin family protein binding protein complex scaffold activity ubiquitin ligase complex scaffold activity structural molecule activity protein binding binding protein domain specific binding enzyme regulator activity ubiquitin ligase activator activity enzyme activator activity ubiquitin-protein transferase regulator activity molecular function activator activity molecular function regulator activity ubiquitin-protein transferase activator activity cullin family protein binding ubiquitin-like ligase-substrate adaptor activity enzyme-substrate adaptor activity protein-macromolecule adaptor activity molecular adaptor activity beta-catenin binding F-box domain binding	maintenance of protein location cellular localization maintenance of protein location in nucleus protein localization to nucleus maintenance of location maintenance of location in cell localization maintenance of protein location in cell macromolecule localization protein localization to organelle cellular process maintenance of protein localization in organelle intracellular protein localization positive regulation of epithelial cell apoptotic process maintenance of protein location cellular localization maintenance of protein location in nucleus protein localization to nucleus maintenance of location maintenance of location in cell localization maintenance of protein location in cell macromolecule localization protein localization to organelle cellular process maintenance of protein localization in organelle intracellular protein localization positive regulation of epithelial cell apoptotic process regulation of biological process positive regulation of programmed cell death regulation of cellular process regulation of epithelial cell apoptotic process regulation of apoptotic process biological regulation positive regulation of biological process regulation of programmed cell death cell death positive regulation of apoptotic process epithelial cell apoptotic process apoptotic process programmed cell death positive regulation of cellular process primary metabolic process protein ubiquitination macromolecule modification metabolic process protein metabolic process macromolecule metabolic process post-translational protein modification protein modification process protein modification by small protein conjugation protein modification by small protein conjugation or removal catabolic process proteasomal protein catabolic process protein catabolic process proteasome-mediated ubiquitin-dependent protein catabolic process macromolecule catabolic process modification-dependent macromolecule catabolic process modification-dependent protein catabolic process SCF-dependent proteasomal ubiquitin-dependent protein catabolic process ubiquitin-dependent protein catabolic process protein polyubiquitination protein K48-linked ubiquitination protein monoubiquitination cellular component organization chromatin organization chromatin remodeling cellular component organization or biogenesis	membrane-bounded organelle intracellular organelle protein-containing complex cellular anatomical structure intracellular anatomical structure organelle nucleus nuclear protein-containing complex intracellular membrane-bounded organelle PcG protein complex cell-cell junction anchoring junction gap junction cell junction membrane-bounded organelle intracellular organelle protein-containing complex cellular anatomical structure intracellular anatomical structure organelle nucleus nuclear protein-containing complex intracellular membrane-bounded organelle PcG protein complex cell-cell junction anchoring junction gap junction cell junction centrosome microtubule organizing center cytoskeleton membraneless organelle intracellular membraneless organelle microtubule cytoskeleton cytoplasm cytosol membrane-enclosed lumen intracellular organelle lumen nucleoplasm organelle lumen nuclear lumen cullin-RING ubiquitin ligase complex ubiquitin ligase complex catalytic complex SCF ubiquitin ligase complex transferase complex intracellular protein-containing complex Cul7-RING ubiquitin ligase complex
QA [auth U], RA [auth V], SA [auth W]	Polyubiquitin-C	protein tag activity molecular tag activity structural molecule activity structural constituent of ribosome	catabolic process modification-dependent macromolecule catabolic process modification-dependent protein catabolic process metabolic process cellular process primary metabolic process protein catabolic process protein metabolic process macromolecule metabolic process macromolecule catabolic process protein ubiquitination macromolecule modification post-translational protein modification protein modification process catabolic process modification-dependent macromolecule catabolic process modification-dependent protein catabolic process metabolic process cellular process primary metabolic process protein catabolic process protein metabolic process macromolecule metabolic process macromolecule catabolic process protein ubiquitination macromolecule modification post-translational protein modification protein modification process protein modification by small protein conjugation protein modification by small protein conjugation or removal	cellular anatomical structure myelin sheath intracellular organelle intracellular anatomical structure cytosolic ribosome organelle membraneless organelle intracellular membraneless organelle ribosome cytoplasm cytosol membrane-bounded organelle mitochondrial membrane mitochondrion cellular anatomical structure myelin sheath intracellular organelle intracellular anatomical structure cytosolic ribosome organelle membraneless organelle intracellular membraneless organelle ribosome cytoplasm cytosol membrane-bounded organelle mitochondrial membrane mitochondrion membrane organelle outer membrane intracellular membrane-bounded organelle organelle envelope bounding membrane of organelle mitochondrial envelope mitochondrial outer membrane outer membrane organelle membrane nucleus membrane-enclosed lumen intracellular organelle lumen nucleoplasm organelle lumen nuclear lumen
FB [auth n], O [auth AG], VA [auth Z]	NACHT, LRR and PYD domains-containing protein 14	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding	developmental process spermatogenesis sexual reproduction reproductive process multicellular organismal reproductive process developmental process involved in reproduction male gamete generation gamete generation cellular developmental process cell differentiation cellular process regulation of defense response regulation of biological process response to stimulus developmental process spermatogenesis sexual reproduction reproductive process multicellular organismal reproductive process developmental process involved in reproduction male gamete generation gamete generation cellular developmental process cell differentiation cellular process regulation of defense response regulation of biological process response to stimulus regulation of response to external stimulus defense response biological regulation regulation of inflammatory response response to external stimulus regulation of response to stimulus response to stress regulation of response to stress inflammatory response	cellular anatomical structure intracellular anatomical structure cytoplasm
M [auth AE], N [auth AF], TA [auth X], UA [auth Y]	NLR family, pyrin domain containing 4F	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding	-	-
L [auth AA], PA [auth T]	Zinc finger BED domain-containing protein 3	transcription regulator activity DNA-binding transcription factor activity cation binding transition metal ion binding zinc ion binding ion binding binding metal ion binding small molecule binding DNA binding sequence-specific DNA binding sequence-specific double-stranded DNA binding transcription cis-regulatory region binding double-stranded DNA binding transcription regulator activity DNA-binding transcription factor activity cation binding transition metal ion binding zinc ion binding ion binding binding metal ion binding small molecule binding DNA binding sequence-specific DNA binding sequence-specific double-stranded DNA binding transcription cis-regulatory region binding double-stranded DNA binding nucleic acid binding RNA polymerase II transcription regulatory region sequence-specific DNA binding transcription regulatory region nucleic acid binding	cellular component organization localization organelle organization organelle localization cellular process cellular component organization or biogenesis endoplasmic reticulum localization endoplasmic reticulum organization endomembrane system organization regulation of protein stability biological regulation regulation of biological quality protein stabilization mitochondrion localization cellular component organization localization organelle organization organelle localization cellular process cellular component organization or biogenesis endoplasmic reticulum localization endoplasmic reticulum organization endomembrane system organization regulation of protein stability biological regulation regulation of biological quality protein stabilization mitochondrion localization response to stimulus response to hormone response to chemical response to endogenous stimulus response to peptide hormone response to insulin response to oxygen-containing compound response to nitrogen compound establishment of organelle localization cellular localization microtubule cytoskeleton organization spindle localization establishment of localization establishment of spindle localization establishment of localization in cell microtubule-based process cell cycle cytoskeleton organization cell cycle process regulation of cellular process regulation of protein modification process regulation of protein phosphorylation negative regulation of biological process negative regulation of phosphate metabolic process regulation of primary metabolic process phosphate-containing compound metabolic process negative regulation of protein modification process negative regulation of cellular process protein metabolic process protein modification process negative regulation of protein metabolic process negative regulation of macromolecule metabolic process regulation of biological process protein phosphorylation phosphorylation regulation of protein metabolic process negative regulation of metabolic process primary metabolic process regulation of macromolecule metabolic process negative regulation of protein phosphorylation macromolecule modification metabolic process regulation of phosphorylation macromolecule metabolic process negative regulation of phosphorylation regulation of metabolic process developmental process multicellular organismal process regulation of embryonic development regulation of multicellular organismal development regulation of developmental process positive regulation of biological process embryo development positive regulation of developmental process multicellular organism development anatomical structure development positive regulation of embryonic development positive regulation of multicellular organismal process regulation of multicellular organismal process cellular response to stimulus cell surface receptor signaling pathway signaling cell communication signal transduction Wnt signaling pathway positive regulation of cell communication positive regulation of signal transduction regulation of canonical Wnt signaling pathway canonical Wnt signaling pathway regulation of signal transduction positive regulation of response to stimulus positive regulation of Wnt signaling pathway positive regulation of cellular process positive regulation of canonical Wnt signaling pathway regulation of signaling regulation of Wnt signaling pathway regulation of response to stimulus regulation of cell communication positive regulation of signaling actin cytoskeleton organization actin filament organization actin filament-based process supramolecular fiber organization positive regulation of DNA-templated transcription RNA metabolic process positive regulation of macromolecule biosynthetic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process positive regulation of metabolic process DNA-templated transcription regulation of RNA metabolic process transcription by RNA polymerase II positive regulation of biosynthetic process positive regulation of macromolecule metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of biosynthetic process regulation of transcription by RNA polymerase II positive regulation of transcription by RNA polymerase II nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process positive regulation of RNA metabolic process regulation of gene expression biosynthetic process positive regulation of RNA biosynthetic process regulation of macromolecule biosynthetic process regulation of DNA-templated transcription response to hexose response to monosaccharide response to carbohydrate response to glucose	cellular anatomical structure membrane intracellular anatomical structure cytoplasm cytosol
G [auth 6], J [auth 9], KA [auth O], NA [auth R]	Oocyte-expressed protein homolog	RNA binding binding nucleic acid binding structural molecule activity structural constituent of cytoplasmic lattice	cellular response to stimulus regulation of cellular process response to stimulus regulation of double-strand break repair positive regulation of biological process regulation of cellular response to stress regulation of primary metabolic process positive regulation of response to stimulus nucleobase-containing compound metabolic process positive regulation of metabolic process positive regulation of DNA repair cellular response to stress response to stress regulation of response to stress cellular response to stimulus regulation of cellular process response to stimulus regulation of double-strand break repair positive regulation of biological process regulation of cellular response to stress regulation of primary metabolic process positive regulation of response to stimulus nucleobase-containing compound metabolic process positive regulation of metabolic process positive regulation of DNA repair cellular response to stress response to stress regulation of response to stress positive regulation of macromolecule metabolic process regulation of nucleobase-containing compound metabolic process positive regulation of cellular process DNA repair double-strand break repair regulation of biological process biological regulation primary metabolic process DNA metabolic process regulation of macromolecule metabolic process positive regulation of double-strand break repair nucleic acid metabolic process regulation of DNA repair positive regulation of DNA metabolic process regulation of response to stimulus DNA damage response metabolic process cellular process macromolecule metabolic process regulation of metabolic process regulation of DNA metabolic process cellular component organization cellular component biogenesis cellular component assembly protein-containing complex organization protein-containing complex assembly cellular component organization or biogenesis DNA-templated DNA replication DNA-templated DNA replication maintenance of fidelity DNA replication replication fork processing protein storage nutrient storage localization regulation of localization establishment of protein localization regulation of protein localization macromolecule localization regulation of establishment of protein localization intracellular protein localization establishment of localization sexual reproduction reproductive process fertilization establishment or maintenance of bipolar cell polarity establishment or maintenance of apical/basal cell polarity establishment or maintenance of cell polarity developmental process multicellular organism development multicellular organismal process embryo development ending in birth or egg hatching chordate embryonic development anatomical structure development embryo development in utero embryonic development animal gross anatomical part developmental process multi-multicellular organism process female pregnancy embryo implantation multi-organism reproductive process regulation of DNA recombination positive regulation of double-strand break repair via homologous recombination recombinational repair double-strand break repair via homologous recombination positive regulation of DNA recombination DNA recombination regulation of double-strand break repair via homologous recombination protein phosphorylation phosphorylation macromolecule modification phosphate-containing compound metabolic process protein metabolic process protein modification process establishment of organelle localization cellular localization microtubule cytoskeleton organization spindle localization organelle organization establishment of spindle localization organelle localization establishment of localization in cell microtubule-based process cell cycle cytoskeleton organization cell cycle process cell division regulation of cell division embryonic pattern specification pattern specification process actin cytoskeleton organization actin filament organization actin filament-based process supramolecular fiber organization positive regulation of organelle organization regulation of cellular component organization positive regulation of cellular component organization regulation of reproductive process meiotic cell cycle process positive regulation of cell cycle process meiotic nuclear division regulation of cell cycle positive regulation of reproductive process regulation of meiotic cell cycle regulation of cell cycle process organelle fission meiotic cell cycle positive regulation of nuclear division positive regulation of meiotic cell cycle regulation of organelle organization positive regulation of cell cycle regulation of meiotic nuclear division nuclear division regulation of nuclear division positive regulation of meiotic nuclear division	cytoplasmic lattice ooplasm intracellular organelle cellular anatomical structure intracellular anatomical structure organelle membraneless organelle intracellular membraneless organelle cytoplasm apical part of cell cell periphery cell cortex protein-containing complex subcortical maternal complex cytoplasmic lattice ooplasm intracellular organelle cellular anatomical structure intracellular anatomical structure organelle membraneless organelle intracellular membraneless organelle cytoplasm apical part of cell cell periphery cell cortex protein-containing complex subcortical maternal complex membrane-bounded organelle nucleus intracellular membrane-bounded organelle
F [auth 5], I [auth 8], JA [auth N], MA [auth Q]	Transducin-like enhancer protein 6	transcription corepressor activity transcription regulator activity transcription coregulator activity structural molecule activity structural constituent of cytoplasmic lattice	developmental process spermatogenesis sexual reproduction reproductive process multicellular organismal reproductive process developmental process involved in reproduction male gamete generation gamete generation protein storage cellular process nutrient storage cellular response to stimulus regulation of cellular process response to stimulus developmental process spermatogenesis sexual reproduction reproductive process multicellular organismal reproductive process developmental process involved in reproduction male gamete generation gamete generation protein storage cellular process nutrient storage cellular response to stimulus regulation of cellular process response to stimulus signaling negative regulation of signaling regulation of canonical Wnt signaling pathway canonical Wnt signaling pathway negative regulation of biological process regulation of signal transduction negative regulation of cell communication cell communication negative regulation of Wnt signaling pathway negative regulation of cellular process signal transduction Wnt signaling pathway regulation of biological process regulation of signaling cell surface receptor signaling pathway regulation of Wnt signaling pathway negative regulation of response to stimulus biological regulation negative regulation of signal transduction negative regulation of canonical Wnt signaling pathway regulation of response to stimulus regulation of cell communication RNA metabolic process primary metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process biosynthetic process metabolic process macromolecule metabolic process multicellular organismal process multi-multicellular organism process embryo development embryonic process involved in female pregnancy multicellular organism development embryo development ending in birth or egg hatching anatomical structure development female pregnancy animal gross anatomical part developmental process multi-organism reproductive process sperm motility cilium movement involved in cell motility cilium or flagellum-dependent cell motility cilium-dependent cell motility flagellated sperm motility microtubule-based movement microtubule-based process cilium movement cell motility cellular component organization localization organelle organization organelle localization cellular component organization or biogenesis endoplasmic reticulum localization endoplasmic reticulum organization endomembrane system organization regulation of biosynthetic process epigenetic programming of gene expression epigenetic programming in the zygotic pronuclei epigenetic regulation of gene expression regulation of macromolecule metabolic process regulation of gene expression chromatin organization chromatin remodeling regulation of macromolecule biosynthetic process regulation of metabolic process spermatogonial cell division cell division cellular developmental process regulation of developmental process positive regulation of biological process regulation of cell differentiation positive regulation of neuron differentiation positive regulation of developmental process neurogenesis neuron differentiation positive regulation of cell differentiation cell differentiation positive regulation of cellular process system development nervous system development generation of neurons regulation of neuron differentiation mitochondrion localization establishment of organelle localization cellular localization microtubule cytoskeleton organization spindle localization establishment of localization establishment of spindle localization establishment of localization in cell cell cycle cytoskeleton organization cell cycle process regulation of cell division regulation of embryonic development regulation of multicellular organismal development positive regulation of embryonic development positive regulation of multicellular organismal process regulation of multicellular organismal process positive regulation of nervous system development cell development regulation of neurogenesis regulation of cell development regulation of nervous system development positive regulation of neurogenesis positive regulation of cell development regulation of primary metabolic process negative regulation of RNA biosynthetic process regulation of RNA metabolic process transcription by RNA polymerase II negative regulation of nucleobase-containing compound metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process negative regulation of macromolecule metabolic process regulation of transcription by RNA polymerase II negative regulation of DNA-templated transcription negative regulation of transcription by RNA polymerase II negative regulation of metabolic process negative regulation of biosynthetic process negative regulation of macromolecule biosynthetic process regulation of DNA-templated transcription negative regulation of RNA metabolic process actin cytoskeleton organization actin filament organization actin filament-based process supramolecular fiber organization	cytoplasmic lattice ooplasm intracellular organelle cellular anatomical structure intracellular anatomical structure organelle membraneless organelle intracellular membraneless organelle cytoplasm cell periphery cell cortex cytosol protein-containing complex transcription regulator complex cytoplasmic lattice ooplasm intracellular organelle cellular anatomical structure intracellular anatomical structure organelle membraneless organelle intracellular membraneless organelle cytoplasm cell periphery cell cortex cytosol protein-containing complex transcription regulator complex membrane-bounded organelle cell projection sperm midpiece cilium 9+2 motile cilium sperm flagellum motile cilium plasma membrane bounded cell projection subcortical maternal complex nucleus intracellular membrane-bounded organelle
E [auth 4], H [auth 7], IA [auth M], LA [auth P]	NACHT, LRR and PYD domains-containing protein 5	cytoskeletal protein binding protein binding binding tubulin binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding cytoskeletal protein binding protein binding binding tubulin binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding structural molecule activity structural constituent of cytoplasmic lattice	cellular component organization cellular component biogenesis cellular component assembly protein-containing complex organization protein-containing complex assembly cellular process cellular component organization or biogenesis developmental process anatomical structure morphogenesis anatomical structure development animal organ development animal organ morphogenesis animal gross anatomical part developmental process protein storage cellular component organization cellular component biogenesis cellular component assembly protein-containing complex organization protein-containing complex assembly cellular process cellular component organization or biogenesis developmental process anatomical structure morphogenesis anatomical structure development animal organ development animal organ morphogenesis animal gross anatomical part developmental process protein storage nutrient storage sexual reproduction reproductive process fertilization multicellular organism development multicellular organismal process embryo development ending in birth or egg hatching chordate embryonic development embryo development in utero embryonic development multi-multicellular organism process female pregnancy embryo implantation multi-organism reproductive process regulation of cellular process catabolic process RNA metabolic process macromolecule catabolic process regulation of primary metabolic process nucleobase-containing compound metabolic process post-transcriptional regulation of gene expression regulation of RNA metabolic process regulation of biological quality regulation of nucleobase-containing compound metabolic process RNA catabolic process regulation of biosynthetic process regulation of biological process biological regulation primary metabolic process regulation of macromolecule metabolic process regulation of catabolic process gene expression macromolecule biosynthetic process nucleic acid metabolic process nucleobase-containing compound catabolic process regulation of gene expression biosynthetic process regulation of RNA stability nucleic acid catabolic process regulation of macromolecule biosynthetic process metabolic process macromolecule metabolic process regulation of metabolic process regulation of protein stability regulated exocytosis transport regulation of reproductive process negative regulation of biological process vesicle-mediated transport negative regulation of fertilization localization secretion by cell cortical granule exocytosis single fertilization calcium-ion regulated exocytosis secretion egg activation cell activation export from cell regulation of fertilization establishment of localization exocytosis negative regulation of reproductive process prevention of polyspermy regulation of defense response response to stimulus regulation of response to external stimulus defense response regulation of inflammatory response response to external stimulus regulation of response to stimulus response to stress regulation of response to stress inflammatory response regulation of localization regulation of protein localization macromolecule localization intracellular protein localization establishment of organelle localization cellular localization microtubule cytoskeleton organization spindle localization organelle organization establishment of spindle localization organelle localization establishment of localization in cell microtubule-based process cell cycle cytoskeleton organization cell cycle process cell division regulation of cell division regulation of embryonic development regulation of multicellular organismal development regulation of developmental process positive regulation of biological process positive regulation of developmental process positive regulation of embryonic development positive regulation of multicellular organismal process regulation of multicellular organismal process actin cytoskeleton organization actin filament organization actin filament-based process supramolecular fiber organization	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membraneless organelle nucleolus intracellular organelle lumen organelle lumen membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membraneless organelle nucleolus intracellular organelle lumen organelle lumen membraneless organelle nuclear lumen cytoplasmic lattice ooplasm cell periphery cell cortex intracellular vesicle endomembrane system cytoplasmic vesicle secretory granule secretory vesicle vesicle cortical granule cytosol protein-containing complex Golgi apparatus subcortical maternal complex cell cortex region cytoplasmic region apical cortex

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth 0], OA [auth S]	IPR036612	K Homology domain, type 1 superfamily	Homologous Superfamily
A [auth 0], OA [auth S]	IPR051778	KH Domain-Containing Protein 1	Family
A [auth 0], OA [auth S]	IPR031952	KH-like RNA-binding domain	Domain
AA [auth E], B [auth 1], BA [auth F], C [auth 2], CA [auth G], AA [auth E], B [auth 1], BA [auth F], C [auth 2], CA [auth G], D [auth 3], DA [auth H], EA [auth I], EB [auth m], FA [auth J], GA [auth K], HA [auth L], K [auth A], KB [auth s], LB [auth t], MB [auth u], NB [auth v], OB [auth w], PB [auth x], QB [auth y], RB [auth z], X [auth B], Y [auth C], Z [auth D]	IPR013732	Protein-arginine deiminase (PAD), N-terminal	Domain
AA [auth E], B [auth 1], BA [auth F], C [auth 2], CA [auth G], AA [auth E], B [auth 1], BA [auth F], C [auth 2], CA [auth G], D [auth 3], DA [auth H], EA [auth I], EB [auth m], FA [auth J], GA [auth K], HA [auth L], K [auth A], KB [auth s], LB [auth t], MB [auth u], NB [auth v], OB [auth w], PB [auth x], QB [auth y], RB [auth z], X [auth B], Y [auth C], Z [auth D]	IPR013733	Protein-arginine deiminase (PAD), central domain	Domain
AA [auth E], B [auth 1], BA [auth F], C [auth 2], CA [auth G], AA [auth E], B [auth 1], BA [auth F], C [auth 2], CA [auth G], D [auth 3], DA [auth H], EA [auth I], EB [auth m], FA [auth J], GA [auth K], HA [auth L], K [auth A], KB [auth s], LB [auth t], MB [auth u], NB [auth v], OB [auth w], PB [auth x], QB [auth y], RB [auth z], X [auth B], Y [auth C], Z [auth D]	IPR008972	Cupredoxin	Homologous Superfamily
AA [auth E], B [auth 1], BA [auth F], C [auth 2], CA [auth G], AA [auth E], B [auth 1], BA [auth F], C [auth 2], CA [auth G], D [auth 3], DA [auth H], EA [auth I], EB [auth m], FA [auth J], GA [auth K], HA [auth L], K [auth A], KB [auth s], LB [auth t], MB [auth u], NB [auth v], OB [auth w], PB [auth x], QB [auth y], RB [auth z], X [auth B], Y [auth C], Z [auth D]	IPR038685	PAD, N-terminal domain superfamily	Homologous Superfamily
AA [auth E], B [auth 1], BA [auth F], C [auth 2], CA [auth G], AA [auth E], B [auth 1], BA [auth F], C [auth 2], CA [auth G], D [auth 3], DA [auth H], EA [auth I], EB [auth m], FA [auth J], GA [auth K], HA [auth L], K [auth A], KB [auth s], LB [auth t], MB [auth u], NB [auth v], OB [auth w], PB [auth x], QB [auth y], RB [auth z], X [auth B], Y [auth C], Z [auth D]	IPR013530	Protein-arginine deiminase, C-terminal	Domain
AA [auth E], B [auth 1], BA [auth F], C [auth 2], CA [auth G], AA [auth E], B [auth 1], BA [auth F], C [auth 2], CA [auth G], D [auth 3], DA [auth H], EA [auth I], EB [auth m], FA [auth J], GA [auth K], HA [auth L], K [auth A], KB [auth s], LB [auth t], MB [auth u], NB [auth v], OB [auth w], PB [auth x], QB [auth y], RB [auth z], X [auth B], Y [auth C], Z [auth D]	IPR036556	Protein-arginine deiminase, central domain superfamily	Homologous Superfamily
AA [auth E], B [auth 1], BA [auth F], C [auth 2], CA [auth G], AA [auth E], B [auth 1], BA [auth F], C [auth 2], CA [auth G], D [auth 3], DA [auth H], EA [auth I], EB [auth m], FA [auth J], GA [auth K], HA [auth L], K [auth A], KB [auth s], LB [auth t], MB [auth u], NB [auth v], OB [auth w], PB [auth x], QB [auth y], RB [auth z], X [auth B], Y [auth C], Z [auth D]	IPR004303	Protein-arginine deiminase	Family
GB [auth o], P [auth AH], WA [auth a]	IPR015947	PUA-like superfamily	Homologous Superfamily
GB [auth o], P [auth AH], WA [auth a]	IPR001965	Zinc finger, PHD-type	Domain
GB [auth o], P [auth AH], WA [auth a]	IPR047406	E3 ubiquitin-protein ligase UHRF1, ubiquitin-like domain	Domain
GB [auth o], P [auth AH], WA [auth a]	IPR013083	Zinc finger, RING/FYVE/PHD-type	Homologous Superfamily
GB [auth o], P [auth AH], WA [auth a]	IPR001841	Zinc finger, RING-type	Domain
GB [auth o], P [auth AH], WA [auth a]	IPR036987	SRA-YDG superfamily	Homologous Superfamily
GB [auth o], P [auth AH], WA [auth a]	IPR003105	SRA-YDG	Domain
GB [auth o], P [auth AH], WA [auth a]	IPR019787	Zinc finger, PHD-finger	Domain
GB [auth o], P [auth AH], WA [auth a]	IPR011011	Zinc finger, FYVE/PHD-type	Homologous Superfamily
GB [auth o], P [auth AH], WA [auth a]	IPR017907	Zinc finger, RING-type, conserved site	Conserved Site
GB [auth o], P [auth AH], WA [auth a]	IPR000626	Ubiquitin-like domain	Domain
GB [auth o], P [auth AH], WA [auth a]	IPR021991	UHRF1, tandem tudor domain	Domain
GB [auth o], P [auth AH], WA [auth a]	IPR029071	Ubiquitin-like domain superfamily	Homologous Superfamily
GB [auth o], P [auth AH], WA [auth a]	IPR045134	UHRF1/2-like	Family
HB [auth p], Q [auth AI], XA [auth b]	IPR016135	Ubiquitin-conjugating enzyme/RWD-like	Homologous Superfamily
HB [auth p], Q [auth AI], XA [auth b]	IPR000608	Ubiquitin-conjugating (UBC), catalytic core domain	Domain
HB [auth p], Q [auth AI], XA [auth b]	IPR023313	Ubiquitin-conjugating enzyme, active site	Active Site
IB [auth q], R [auth AJ], YA [auth c]	IPR003008	Tubulin/FtsZ, GTPase domain	Domain
IB [auth q], R [auth AJ], YA [auth c]	IPR008280	Tubulin/FtsZ, C-terminal	Homologous Superfamily
IB [auth q], R [auth AJ], YA [auth c]	IPR037103	Tubulin/FtsZ-like, C-terminal domain	Homologous Superfamily
IB [auth q], R [auth AJ], YA [auth c]	IPR017975	Tubulin, conserved site	Conserved Site
IB [auth q], R [auth AJ], YA [auth c]	IPR002452	Alpha tubulin	Family
IB [auth q], R [auth AJ], YA [auth c]	IPR000217	Tubulin	Family
IB [auth q], R [auth AJ], YA [auth c]	IPR023123	Tubulin, C-terminal	Homologous Superfamily
IB [auth q], R [auth AJ], YA [auth c]	IPR018316	Tubulin/FtsZ, 2-layer sandwich domain	Domain
IB [auth q], R [auth AJ], YA [auth c]	IPR036525	Tubulin/FtsZ, GTPase domain superfamily	Homologous Superfamily
JB [auth r], S [auth AK], ZA [auth d]	IPR008280	Tubulin/FtsZ, C-terminal	Homologous Superfamily
JB [auth r], S [auth AK], ZA [auth d]	IPR017975	Tubulin, conserved site	Conserved Site
JB [auth r], S [auth AK], ZA [auth d]	IPR023123	Tubulin, C-terminal	Homologous Superfamily
JB [auth r], S [auth AK], ZA [auth d]	IPR002453	Beta tubulin	Family
JB [auth r], S [auth AK], ZA [auth d]	IPR013838	Beta tubulin, autoregulation binding site	Binding Site
JB [auth r], S [auth AK], ZA [auth d]	IPR018316	Tubulin/FtsZ, 2-layer sandwich domain	Domain
JB [auth r], S [auth AK], ZA [auth d]	IPR003008	Tubulin/FtsZ, GTPase domain	Domain
JB [auth r], S [auth AK], ZA [auth d]	IPR037103	Tubulin/FtsZ-like, C-terminal domain	Homologous Superfamily
JB [auth r], S [auth AK], ZA [auth d]	IPR000217	Tubulin	Family
JB [auth r], S [auth AK], ZA [auth d]	IPR036525	Tubulin/FtsZ, GTPase domain superfamily	Homologous Superfamily
BB [auth f], DB [auth h], U [auth AM], W [auth AO]	IPR016073	SKP1 component, POZ domain	Domain
BB [auth f], DB [auth h], U [auth AM], W [auth AO]	IPR001232	S-phase kinase-associated protein 1-like	Family
BB [auth f], DB [auth h], U [auth AM], W [auth AO]	IPR036296	SKP1-like, dimerisation domain superfamily	Homologous Superfamily
BB [auth f], DB [auth h], U [auth AM], W [auth AO]	IPR016072	SKP1 component, dimerisation	Domain
BB [auth f], DB [auth h], U [auth AM], W [auth AO]	IPR011333	SKP1/BTB/POZ domain superfamily	Homologous Superfamily
BB [auth f], DB [auth h], U [auth AM], W [auth AO]	IPR016897	S-phase kinase-associated protein 1	Family
QA [auth U], RA [auth V], SA [auth W]	IPR019954	Ubiquitin conserved site	Conserved Site
QA [auth U], RA [auth V], SA [auth W]	IPR000626	Ubiquitin-like domain	Domain
QA [auth U], RA [auth V], SA [auth W]	IPR019956	Ubiquitin domain	Domain
QA [auth U], RA [auth V], SA [auth W]	IPR050158	Ubiquitin and ubiquitin-like	Family
QA [auth U], RA [auth V], SA [auth W]	IPR029071	Ubiquitin-like domain superfamily	Homologous Superfamily
FB [auth n], O [auth AG], VA [auth Z]	IPR032675	Leucine-rich repeat domain superfamily	Homologous Superfamily
FB [auth n], O [auth AG], VA [auth Z]	IPR041267	NACHT, LRR and PYD domains-containing protein, helical domain HD2	Domain
FB [auth n], O [auth AG], VA [auth Z]	IPR050637	NLRP family, innate immunity and inflammation regulators	Family
FB [auth n], O [auth AG], VA [auth Z]	IPR001611	Leucine-rich repeat	Repeat
FB [auth n], O [auth AG], VA [auth Z]	IPR041075	NOD1/2, winged helix domain	Domain
FB [auth n], O [auth AG], VA [auth Z]	IPR007111	NACHT nucleoside triphosphatase	Domain
FB [auth n], O [auth AG], VA [auth Z]	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily
M [auth AE], N [auth AF], TA [auth X], UA [auth Y]	IPR011029	Death-like domain superfamily	Homologous Superfamily
M [auth AE], N [auth AF], TA [auth X], UA [auth Y]	IPR032675	Leucine-rich repeat domain superfamily	Homologous Superfamily
M [auth AE], N [auth AF], TA [auth X], UA [auth Y]	IPR041267	NACHT, LRR and PYD domains-containing protein, helical domain HD2	Domain
M [auth AE], N [auth AF], TA [auth X], UA [auth Y]	IPR050637	NLRP family, innate immunity and inflammation regulators	Family
M [auth AE], N [auth AF], TA [auth X], UA [auth Y]	IPR001611	Leucine-rich repeat	Repeat
M [auth AE], N [auth AF], TA [auth X], UA [auth Y]	IPR004020	DAPIN domain	Domain
M [auth AE], N [auth AF], TA [auth X], UA [auth Y]	IPR041075	NOD1/2, winged helix domain	Domain
M [auth AE], N [auth AF], TA [auth X], UA [auth Y]	IPR007111	NACHT nucleoside triphosphatase	Domain
M [auth AE], N [auth AF], TA [auth X], UA [auth Y]	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily
L [auth AA], PA [auth T]	IPR036236	Zinc finger C2H2 superfamily	Homologous Superfamily
L [auth AA], PA [auth T]	IPR043471	Zinc finger BED domain-containing protein 2/3	Family
G [auth 6], J [auth 9], KA [auth O], NA [auth R]	IPR036612	K Homology domain, type 1 superfamily	Homologous Superfamily
G [auth 6], J [auth 9], KA [auth O], NA [auth R]	IPR051778	KH Domain-Containing Protein 1	Family
G [auth 6], J [auth 9], KA [auth O], NA [auth R]	IPR031952	KH-like RNA-binding domain	Domain
F [auth 5], I [auth 8], JA [auth N], MA [auth Q]	IPR015943	WD40/YVTN repeat-like-containing domain superfamily	Homologous Superfamily
F [auth 5], I [auth 8], JA [auth N], MA [auth Q]	IPR009146	Groucho/transducin-like enhancer	Family
F [auth 5], I [auth 8], JA [auth N], MA [auth Q]	IPR036322	WD40-repeat-containing domain superfamily	Homologous Superfamily
F [auth 5], I [auth 8], JA [auth N], MA [auth Q]	IPR001680	WD40 repeat	Repeat
E [auth 4], H [auth 7], IA [auth M], LA [auth P]	IPR007111	NACHT nucleoside triphosphatase	Domain
E [auth 4], H [auth 7], IA [auth M], LA [auth P]	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily
E [auth 4], H [auth 7], IA [auth M], LA [auth P]	IPR041267	NACHT, LRR and PYD domains-containing protein, helical domain HD2	Domain
E [auth 4], H [auth 7], IA [auth M], LA [auth P]	IPR001611	Leucine-rich repeat	Repeat
E [auth 4], H [auth 7], IA [auth M], LA [auth P]	IPR041075	NOD1/2, winged helix domain	Domain
E [auth 4], H [auth 7], IA [auth M], LA [auth P]	IPR032675	Leucine-rich repeat domain superfamily	Homologous Superfamily
E [auth 4], H [auth 7], IA [auth M], LA [auth P]	IPR050637	NLRP family, innate immunity and inflammation regulators	Family

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.