Skip to main content

 9T61 | pdb_00009t61

Doxycycline Bound C. burnetii 30S Ribosome


Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF07650KH domain (KH_2)KH domainDomain
PF00189Ribosomal protein S3, C-terminal domain (Ribosomal_S3_C)Ribosomal protein S3, C-terminal domainThis family contains a central domain Pfam:PF00013, hence the amino and carboxyl terminal domains are stored separately. This is a minimal carboxyl-terminal domain. Some are much longer. Domain
PF00163Ribosomal protein S4/S9 N-terminal domain (Ribosomal_S4)Ribosomal protein S4/S9 N-terminal domain- Family
PF01479S4 domain (S4)S4 domainThe S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ...The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA.
Domain
PF03719Ribosomal protein S5, C-terminal domain (Ribosomal_S5_C)Ribosomal protein S5, C-terminal domainDomain
PF00333Ribosomal protein S5, N-terminal domain (Ribosomal_S5)Ribosomal protein S5, N-terminal domainDomain
PF01250Ribosomal protein S6 (Ribosomal_S6)Ribosomal protein S6Domain
PF00177Ribosomal protein S7p/S5e (Ribosomal_S7)Ribosomal protein S7p/S5eThis family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes. Domain
PF00380Ribosomal protein S9/S16 (Ribosomal_S9)Ribosomal protein S9/S16- Family
J [auth K]PF00411Ribosomal protein S11 (Ribosomal_S11)Ribosomal protein S11- Family
L [auth M]PF00416Ribosomal protein S13/S18 (Ribosomal_S13)Ribosomal protein S13/S18- Family
N [auth O]PF00312Ribosomal protein S15 (Ribosomal_S15)Ribosomal protein S15Domain
O [auth P]PF00886Ribosomal protein S16 (Ribosomal_S16)Ribosomal protein S16- Family
P [auth Q]PF00366Ribosomal protein S17 (Ribosomal_S17)Ribosomal protein S17Domain
R [auth S]PF00203Ribosomal protein S19 (Ribosomal_S19)Ribosomal protein S19Domain
T [auth U]PF01165Ribosomal protein S21 (Ribosomal_S21)Ribosomal protein S21- Family
V [auth J]PF00338Ribosomal protein S10p/S20e (Ribosomal_S10)Ribosomal protein S10p/S20eThis family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes. Domain
PF00410Ribosomal protein S8 (Ribosomal_S8)Ribosomal protein S8Domain
S [auth T]PF01649Ribosomal protein S20 (Ribosomal_S20p)Ribosomal protein S20- Family
Q [auth R]PF01084Ribosomal protein S18 (Ribosomal_S18)Ribosomal protein S18- Family
M [auth N]PF00253Ribosomal protein S14p/S29e (Ribosomal_S14)Ribosomal protein S14p/S29e- Family
K [auth L]PF00164Ribosomal protein S12/S23 (Ribosom_S12_S23)Ribosomal protein S12/S23This protein is known as S12 in bacteria and archaea and S23 in eukaryotes. Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
B [auth A]16S ribosomal RNA---
Small ribosomal subunit protein uS3
Small ribosomal subunit protein uS4
Small ribosomal subunit protein uS5
Small ribosomal subunit protein bS6
Small ribosomal subunit protein uS7
Small ribosomal subunit protein uS9
J [auth K]Small ribosomal subunit protein uS11
L [auth M]Small ribosomal subunit protein uS13
N [auth O]Small ribosomal subunit protein uS15
O [auth P]Small ribosomal subunit protein bS16
P [auth Q]Small ribosomal subunit protein uS17
R [auth S]Small ribosomal subunit protein uS19
T [auth U]Small ribosomal subunit protein bS21
U [auth Y]P-site tRNA-Met---
V [auth J]Small ribosomal subunit protein uS10
Small ribosomal subunit protein uS8
S [auth T]Small ribosomal subunit protein bS20
Q [auth R]Small ribosomal subunit protein bS18
M [auth N]Small ribosomal subunit protein uS14
K [auth L]Small ribosomal subunit protein uS12
A [auth 4]Large ribosomal subunit protein bL31

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR005704Small ribosomal subunit protein uS3, bacteriaFamily
IPR001351Small ribosomal subunit protein uS3, C-terminalDomain
IPR057258Small ribosomal subunit protein uS3Family
IPR009019K homology domain superfamily, prokaryotic typeHomologous Superfamily
IPR004087K Homology domainDomain
IPR004044K Homology domain, type 2Domain
IPR015946K homology domain-like, alpha/betaHomologous Superfamily
IPR036419Ribosomal protein S3, C-terminal domain superfamilyHomologous Superfamily
IPR018280Small ribosomal subunit protein uS3, conserved siteConserved Site
IPR018079Small ribosomal subunit protein uS4, conserved siteConserved Site
IPR002942RNA-binding S4 domainDomain
IPR001912Small ribosomal subunit protein uS4, N-terminalDomain
IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
IPR022801Small ribosomal subunit protein uS4Family
IPR005709Small ribosomal subunit protein uS4, bacteriaFamily
IPR000851Small ribosomal subunit protein uS5Family
IPR005324Small ribosomal subunit protein uS5, C-terminalDomain
IPR005712Small ribosomal subunit protein uS5, bacteriaFamily
IPR013810Small ribosomal subunit protein uS5, N-terminalDomain
IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
IPR018192Small ribosomal subunit protein uS5, N-terminal, conserved siteConserved Site
IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
IPR000529Small ribosomal subunit protein bS6Family
IPR020814Small ribosomal subunit protein bS6, plastid/chloroplastFamily
IPR035980Small ribosomal subunit protein bS6 superfamilyHomologous Superfamily
IPR014717Translation elongation factor EF1B/small ribosomal subunit protein bS6Homologous Superfamily
IPR020606Small ribosomal subunit protein uS7, conserved siteConserved Site
IPR000235Small ribosomal subunit protein uS7Family
IPR005717Small ribosomal subunit protein uS7, bacteria/organellaFamily
IPR036823Small ribosomal subunit protein uS7 domain superfamilyHomologous Superfamily
IPR023798Small ribosomal subunit protein uS7 domainDomain
IPR020574Small ribosomal subunit protein uS9, conserved siteConserved Site
IPR023035Small ribosomal subunit protein uS9, bacteria/plastidFamily
IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
IPR000754Small ribosomal subunit protein uS9Family
IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
J [auth K]IPR001971Small ribosomal subunit protein uS11Family
J [auth K]IPR036967Small ribosomal subunit protein uS11 superfamilyHomologous Superfamily
J [auth K]IPR019981Small ribosomal subunit protein uS11, bacteriaFamily
J [auth K]IPR018102Small ribosomal subunit protein uS11, conserved siteConserved Site
L [auth M]IPR027437Small ribosomal subunit protein uS13, C-terminalHomologous Superfamily
L [auth M]IPR001892Small ribosomal subunit protein uS13Family
L [auth M]IPR018269Small ribosomal subunit protein uS13, conserved siteConserved Site
L [auth M]IPR010979Small ribosomal subunit protein uS13-like, H2THHomologous Superfamily
L [auth M]IPR019980Small ribosomal subunit protein uS13, bacteriaFamily
N [auth O]IPR005290Small ribosomal subunit protein uS15, bacteriaFamily
N [auth O]IPR009068uS15/NS1, RNA-binding domain superfamilyHomologous Superfamily
N [auth O]IPR000589Small ribosomal subunit protein uS15Family
O [auth P]IPR023803Small ribosomal subunit protein bS16 domain superfamilyHomologous Superfamily
O [auth P]IPR000307Small ribosomal subunit protein bS16Family
P [auth Q]IPR019984Small ribosomal subunit protein uS17, bacteria/chloroplastFamily
P [auth Q]IPR019979Small ribosomal subunit protein uS17, conserved siteConserved Site
P [auth Q]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
P [auth Q]IPR000266Small ribosomal subunit protein uS17Family
R [auth S]IPR005732Small ribosomal subunit protein uS19, bacteriaFamily
R [auth S]IPR002222Small ribosomal subunit protein uS19Family
R [auth S]IPR023575Small ribosomal subunit protein uS19, superfamilyHomologous Superfamily
R [auth S]IPR020934Small ribosomal subunit protein uS19, conserved siteConserved Site
T [auth U]IPR038380Small ribosomal subunit protein bS21 superfamilyHomologous Superfamily
T [auth U]IPR001911Small ribosomal subunit protein bS21Family
V [auth J]IPR001848Small ribosomal subunit protein uS10Family
V [auth J]IPR027486Small ribosomal subunit protein uS10 domainDomain
V [auth J]IPR036838Small ribosomal subunit protein uS10 domain superfamilyHomologous Superfamily
V [auth J]IPR018268Small ribosomal subunit protein uS10, conserved siteConserved Site
IPR000630Small ribosomal subunit protein uS8Family
IPR047863Small ribosomal subunit protein uS8, conserved siteConserved Site
IPR035987Small ribosomal subunit protein uS8 superfamilyHomologous Superfamily
S [auth T]IPR036510Small ribosomal subunit protein bS20 superfamilyHomologous Superfamily
S [auth T]IPR002583Small ribosomal subunit protein bS20Family
Q [auth R]IPR001648Small ribosomal subunit protein bS18Family
Q [auth R]IPR036870Small ribosomal subunit protein bS18 superfamilyHomologous Superfamily
M [auth N]IPR001209Small ribosomal subunit protein uS14Family
M [auth N]IPR018271Small ribosomal subunit protein uS14, conserved siteConserved Site
M [auth N]IPR023036Small ribosomal subunit protein uS14, bacteria/plastidFamily
K [auth L]IPR006032Small ribosomal subunit protein uS12Family
K [auth L]IPR005679Ribosomal protein uS12, bacteriaFamily
K [auth L]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
A [auth 4]IPR002150Large ribosomal subunit protein bL31 type A/BFamily
A [auth 4]IPR027491Large ribosomal subunit protein bL31 type AFamily
A [auth 4]IPR042105Large ribosomal subunit protein bL31 superfamilyHomologous Superfamily
A [auth 4]IPR034704Large ribosomal subunit protein bL28/bL31-like superfamilyHomologous Superfamily