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 9SR5 | pdb_00009sr5

Crystal Structure of the NlpC/P60 Peptidase YkfC from Bacillus subtilis

External Resource: Annotation


Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF23795YKFC SH3b2 domain (SH3_YKFC_2nd)YKFC SH3b2 domainThis entry represents the second of two N-terminal bacterial SH3 (SH3b2) domains found in bacterial dipeptidyl-peptidases VI such as Gamma-D-glutamyl-L-lysine dipeptidyl-peptidase (YKFC). YKFC consist of three domains, the N-terminal SH3b1 (Pfam: PF1 ...This entry represents the second of two N-terminal bacterial SH3 (SH3b2) domains found in bacterial dipeptidyl-peptidases VI such as Gamma-D-glutamyl-L-lysine dipeptidyl-peptidase (YKFC). YKFC consist of three domains, the N-terminal SH3b1 (Pfam: PF18348), SH3b2 and a C-terminal NlpC/P60 (Pfam: PF00877). The active site is located at the SH3b1-NlpC/P60 interface, whereas the SH3b2 domain is distal to this [1,2].
Domain
PF00877NlpC/P60 family (NLPC_P60)NlpC/P60 familyThe function of this domain is unknown. It is found in several lipoproteins. Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Gamma-D-glutamyl-L-lysine dipeptidyl-peptidase -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR057812YKFC, SH3b2 domainDomain
IPR000064Endopeptidase, NLPC/P60 domainDomain
IPR038765Papain-like cysteine peptidase superfamilyHomologous Superfamily
IPR051202Peptidase C40Family

Protein Modification Annotation

Modified Residue(s)
ChainResidue(s)Description
OCS Parent Component: CYS

:  AA0556

:  L-cysteic acid (L-cysteine sulfonic acid) MOD:00460