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 9SMD | pdb_00009smd

Ribosome-dome complex including the Sec-translocon (SecYEG-SecA-SecDF) from antibiotics treated Mycoplasma pneumoniae cells (Combined)


Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
B [auth 1]50S ribosomal protein L35
C [auth 10]Protein translocase subunit SecY-
D [auth 11]Probable protein-export membrane protein SecG
F [auth 17]SecDF- -
J [auth 5]16S ribosomal RNA---
L [auth 7]tRNA-Asp (P-site)---
P [auth AA]30S ribosomal protein S5
S [auth C]30S ribosomal protein S4
U [auth F]30S ribosomal protein S7
Y [auth J]30S ribosomal protein S11
AA [auth L]30S ribosomal protein S13
DA [auth O]30S ribosomal protein S16
EA [auth P]30S ribosomal protein S17
GA [auth R]30S ribosomal protein S19
KA [auth Y]mRNA---
PA [auth d]50S ribosomal protein L5
WA [auth k]50S ribosomal protein L15
ZA [auth n]Large ribosomal subunit protein uL18
AB [auth o]50S ribosomal protein L19
CB [auth q]50S ribosomal protein L21
DB [auth r]50S ribosomal protein L22
FB [auth t]50S ribosomal protein L24
KB [auth y]50S ribosomal protein L32
LB [auth z]50S ribosomal protein L33 1
MB [auth 13]Uncharacterized lipoprotein MG307 homolog- -
OB [auth 15]Uncharacterized lipoprotein MG338 homolog- -
PB [auth 18],
QB [auth 16]
Uncharacterized lipoprotein MG348 homolog- -
I [auth 4]5S ribosomal RNA---
H [auth 3]23S ribosomal RNA---
G [auth 2]50S ribosomal protein L36
NB [auth 14]Uncharacterized lipoprotein MG309 homolog- -
IB [auth w]50S ribosomal protein L29
HB [auth v]50S ribosomal protein L28
GB [auth u]50S ribosomal protein L27
EB [auth s]Large ribosomal subunit protein uL23
BB [auth p]50S ribosomal protein L20
YA [auth m]50S ribosomal protein L17
XA [auth l]50S ribosomal protein L16
E [auth 12]SecE
VA [auth j]50S ribosomal protein L14
UA [auth i]50S ribosomal protein L13
TA [auth h]50S ribosomal protein L11
SA [auth g]50S ribosomal protein L10
RA [auth f]50S ribosomal protein L9
QA [auth e]50S ribosomal protein L6
OA [auth c]50S ribosomal protein L4
NA [auth b]50S ribosomal protein L3
MA [auth a]50S ribosomal protein L2
LA [auth Z]Nascent peptide---
JA [auth W]30S ribosomal protein S3
IA [auth T]30S ribosomal protein S21
HA [auth S]30S ribosomal protein S20
FA [auth Q]30S ribosomal protein S18
CA [auth N]30S ribosomal protein S15
BA [auth M]30S ribosomal protein S14 type Z
Z [auth K]30S ribosomal protein S12
X [auth I]30S ribosomal protein S10
W [auth H]Small ribosomal subunit protein uS9
V [auth G]30S ribosomal protein S8
T [auth E]30S ribosomal protein S6
JB [auth x],
R [auth AC]
50S ribosomal protein L31
Q [auth AB]mRNA---
O [auth A]30S ribosomal protein S2
N [auth 9]Protein translocase subunit SecA
M [auth 8]tRNA-Lys (A-site)---
K [auth 6]16S ribosomal RNA---
A [auth 0]Large ribosomal subunit protein bL34

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
B [auth 1]IPR021137Large ribosomal subunit protein bL35-likeFamily
B [auth 1]IPR018265Large ribosomal subunit protein bL35, conserved siteConserved Site
B [auth 1]IPR001706Large ribosomal subunit protein bL35Family
B [auth 1]IPR037229Large ribosomal subunit protein bL35 superfamilyHomologous Superfamily
C [auth 10]IPR002208SecY/SEC61-alpha familyFamily
C [auth 10]IPR030659SecY conserved siteConserved Site
C [auth 10]IPR026593Protein translocase subunit SecYFamily
C [auth 10]IPR023201SecY domain superfamilyHomologous Superfamily
D [auth 11]IPR004692Preprotein translocase SecG subunitFamily
P [auth AA]IPR005712Small ribosomal subunit protein uS5, bacteriaFamily
P [auth AA]IPR000851Small ribosomal subunit protein uS5Family
P [auth AA]IPR005324Small ribosomal subunit protein uS5, C-terminalDomain
P [auth AA]IPR013810Small ribosomal subunit protein uS5, N-terminalDomain
P [auth AA]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
P [auth AA]IPR018192Small ribosomal subunit protein uS5, N-terminal, conserved siteConserved Site
P [auth AA]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
S [auth C]IPR018079Small ribosomal subunit protein uS4, conserved siteConserved Site
S [auth C]IPR002942RNA-binding S4 domainDomain
S [auth C]IPR001912Small ribosomal subunit protein uS4, N-terminalDomain
S [auth C]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
S [auth C]IPR022801Small ribosomal subunit protein uS4Family
S [auth C]IPR005709Small ribosomal subunit protein uS4, bacteriaFamily
U [auth F]IPR020606Small ribosomal subunit protein uS7, conserved siteConserved Site
U [auth F]IPR000235Small ribosomal subunit protein uS7Family
U [auth F]IPR005717Small ribosomal subunit protein uS7, bacteria/organellaFamily
U [auth F]IPR036823Small ribosomal subunit protein uS7 domain superfamilyHomologous Superfamily
U [auth F]IPR023798Small ribosomal subunit protein uS7 domainDomain
Y [auth J]IPR001971Small ribosomal subunit protein uS11Family
Y [auth J]IPR036967Small ribosomal subunit protein uS11 superfamilyHomologous Superfamily
Y [auth J]IPR019981Small ribosomal subunit protein uS11, bacteriaFamily
Y [auth J]IPR018102Small ribosomal subunit protein uS11, conserved siteConserved Site
AA [auth L]IPR027437Small ribosomal subunit protein uS13, C-terminalHomologous Superfamily
AA [auth L]IPR001892Small ribosomal subunit protein uS13Family
AA [auth L]IPR018269Small ribosomal subunit protein uS13, conserved siteConserved Site
AA [auth L]IPR010979Small ribosomal subunit protein uS13-like, H2THHomologous Superfamily
AA [auth L]IPR019980Small ribosomal subunit protein uS13, bacteriaFamily
DA [auth O]IPR023803Small ribosomal subunit protein bS16 domain superfamilyHomologous Superfamily
DA [auth O]IPR000307Small ribosomal subunit protein bS16Family
EA [auth P]IPR019984Small ribosomal subunit protein uS17, bacteria/chloroplastFamily
EA [auth P]IPR019979Small ribosomal subunit protein uS17, conserved siteConserved Site
EA [auth P]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
EA [auth P]IPR000266Small ribosomal subunit protein uS17Family
GA [auth R]IPR005732Small ribosomal subunit protein uS19, bacteriaFamily
GA [auth R]IPR002222Small ribosomal subunit protein uS19Family
GA [auth R]IPR023575Small ribosomal subunit protein uS19, superfamilyHomologous Superfamily
GA [auth R]IPR020934Small ribosomal subunit protein uS19, conserved siteConserved Site
PA [auth d]IPR020929Large ribosomal subunit protein uL5, conserved siteConserved Site
PA [auth d]IPR022803Large ribosomal subunit protein uL5 domain superfamilyHomologous Superfamily
PA [auth d]IPR031309Large ribosomal subunit protein uL5, C-terminalDomain
PA [auth d]IPR031310Large ribosomal subunit protein uL5, N-terminalDomain
PA [auth d]IPR002132Large ribosomal subunit protein uL5Family
PA [auth d]IPR020930Large ribosomal subunit protein uL5, bacteriaFamily
WA [auth k]IPR021131Large ribosomal subunit protein uL15/eL18Domain
WA [auth k]IPR030878Large ribosomal subunit protein uL15Family
WA [auth k]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
WA [auth k]IPR063184Ribosomal protein uL15, N-terminal regionDomain
WA [auth k]IPR005749Large ribosomal subunit protein uL15, bacteriaFamily
ZA [auth n]IPR005484Large ribosomal subunit protein uL18, bacterial/plantae/animaliaFamily
ZA [auth n]IPR057268Large ribosomal subunit protein uL18Family
ZA [auth n]IPR004389Large ribosomal subunit protein uL18, bacteriaFamily
AB [auth o]IPR001857Large ribosomal subunit protein bL19Family
AB [auth o]IPR038657Large ribosomal subunit protein bL19 superfamilyHomologous Superfamily
AB [auth o]IPR018257Large ribosomal subunit protein bL19, conserved siteConserved Site
AB [auth o]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
CB [auth q]IPR028909Large ribosomal subunit protein bL21-likeFamily
CB [auth q]IPR001787Large ribosomal subunit protein bL21Family
CB [auth q]IPR036164Large ribosomal subunit protein bL21-like superfamilyHomologous Superfamily
CB [auth q]IPR018258Large ribosomal subunit protein bL21, conserved siteConserved Site
DB [auth r]IPR018260Large ribosomal subunit protein uL22, conserved siteConserved Site
DB [auth r]IPR036394Ribosomal protein uL22 superfamilyHomologous Superfamily
DB [auth r]IPR001063Large ribosomal subunit protein uL22Family
DB [auth r]IPR005727Large ribosomal subunit protein uL22, bacterial/chloroplast-typeFamily
DB [auth r]IPR047867Large ribosomal subunit protein uL22, bacteria/organellaFamily
FB [auth t]IPR057264Large ribosomal subunit protein uL24, C-terminal domainDomain
FB [auth t]IPR003256Large ribosomal subunit protein uL24Family
FB [auth t]IPR041988Large ribosomal subunit protein uL24, KOW domainDomain
FB [auth t]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
FB [auth t]IPR005824KOWDomain
FB [auth t]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
FB [auth t]IPR005825Large ribosomal subunit protein uL24, conserved siteConserved Site
KB [auth y]IPR002677Large ribosomal subunit protein bL32Family
KB [auth y]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
KB [auth y]IPR044957Large ribosomal subunit protein bL32, bacteriaFamily
LB [auth z]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
LB [auth z]IPR038584Large ribosomal subunit protein bL33 superfamilyHomologous Superfamily
LB [auth z]IPR001705Large ribosomal subunit protein bL33Family
LB [auth z]IPR018264Large ribosomal subunit protein bL33, conserved siteConserved Site
MB [auth 13]IPR022186Protein of unknown function DUF3713Family
OB [auth 15]IPR022186Protein of unknown function DUF3713Family
PB [auth 18],
QB [auth 16]
IPR049194Protein of unknown function DUF6856Family
G [auth 2]IPR000473Large ribosomal subunit protein bL36Family
G [auth 2]IPR035977Large ribosomal subunit protein bL36 superfamilyHomologous Superfamily
NB [auth 14]IPR022186Protein of unknown function DUF3713Family
IB [auth w]IPR050063Universal ribosomal protein uL29Family
IB [auth w]IPR001854Large ribosomal subunit protein uL29Family
IB [auth w]IPR036049Large ribosomal subunit protein uL29 superfamilyHomologous Superfamily
IB [auth w]IPR018254Large ribosomal subunit protein uL29, conserved siteConserved Site
HB [auth v]IPR037147Large ribosomal subunit protein bL28 superfamilyHomologous Superfamily
HB [auth v]IPR050096Bacterial ribosomal protein bL28Family
HB [auth v]IPR001383Large ribosomal subunit protein bL28, bacteriaFamily
HB [auth v]IPR026569Large ribosomal subunit protein bL28Family
HB [auth v]IPR034704Large ribosomal subunit protein bL28/bL31-like superfamilyHomologous Superfamily
GB [auth u]IPR001684Large ribosomal subunit protein bL27Family
GB [auth u]IPR018261Large ribosomal subunit protein bL27, conserved siteConserved Site
EB [auth s]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
EB [auth s]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
EB [auth s]IPR013025Large ribosomal subunit protein uL23-likeFamily
BB [auth p]IPR049946Large ribosomal subunit protein bL20, conserved siteConserved Site
BB [auth p]IPR035566Ribosomal protein bL20, C-terminalHomologous Superfamily
BB [auth p]IPR005813Large ribosomal subunit protein bL20Family
YA [auth m]IPR036373Large ribosomal subunit protein bL17 superfamilyHomologous Superfamily
YA [auth m]IPR047859Large ribosomal subunit protein bL17, conserved siteConserved Site
YA [auth m]IPR000456Large ribosomal subunit protein bL17Family
XA [auth l]IPR000114Large ribosomal subunit protein uL16, bacteriaFamily
XA [auth l]IPR036920Large ribosomal subunit protein uL16 superfamilyHomologous Superfamily
XA [auth l]IPR020798Large ribosomal subunit protein uL16, conserved siteConserved Site
XA [auth l]IPR016180Large ribosomal subunit protein uL16 domainDomain
XA [auth l]IPR047873Large ribosomal subunit protein uL16Family
E [auth 12]IPR005807SecE subunit of protein translocation complex, bacterial-likeFamily
VA [auth j]IPR036853Large ribosomal subunit protein uL14 superfamilyHomologous Superfamily
VA [auth j]IPR000218Large ribosomal subunit protein uL14Family
VA [auth j]IPR019972Large ribosomal subunit protein uL14, conserved siteConserved Site
VA [auth j]IPR005745Large ribosomal subunit protein uL14, bacteriaFamily
UA [auth i]IPR023563Large ribosomal subunit protein uL13, conserved siteConserved Site
UA [auth i]IPR005822Large ribosomal subunit protein uL13Family
UA [auth i]IPR005823Large ribosomal subunit protein uL13, bacteriaFamily
UA [auth i]IPR036899Large ribosomal subunit protein uL13 superfamilyHomologous Superfamily
TA [auth h]IPR020785Large ribosomal subunit protein uL11, conserved siteConserved Site
TA [auth h]IPR020783Large ribosomal subunit protein uL11, C-terminalDomain
TA [auth h]IPR000911Ribosomal protein uL11Family
TA [auth h]IPR036769Large ribosomal subunit protein uL11, C-terminal domain superfamilyHomologous Superfamily
TA [auth h]IPR020784Large ribosomal subunit protein uL11, N-terminalDomain
TA [auth h]IPR036796Large ribosomal subunit protein uL11, N-terminal domain superfamilyHomologous Superfamily
TA [auth h]IPR006519Large ribosomal subunit protein uL11, bacteriaFamily
SA [auth g]IPR043141Large ribosomal subunit protein uL10-like domain superfamilyHomologous Superfamily
SA [auth g]IPR022973Large ribosomal subunit protein uL10, bacteriaFamily
SA [auth g]IPR047865Large ribosomal subunit protein uL10, bacteria/organellaFamily
SA [auth g]IPR002363Large ribosomal subunit protein uL10, conserved site, bacteriaConserved Site
SA [auth g]IPR001790Large ribosomal subunit protein uL10, N-terminalDomain
RA [auth f]IPR009027Large ribosomal subunit protein bL9/RNase H1, N-terminalHomologous Superfamily
RA [auth f]IPR020594Large ribosomal subunit protein bL9, bacteria/chloroplastFamily
RA [auth f]IPR036935Large ribosomal subunit protein bL9, N-terminal domain superfamilyHomologous Superfamily
RA [auth f]IPR036791Large ribosomal subunit protein bL9, C-terminal domain superfamilyHomologous Superfamily
RA [auth f]IPR020069Large ribosomal subunit protein bL9, C-terminalDomain
RA [auth f]IPR020070Large ribosomal subunit protein bL9, N-terminalDomain
RA [auth f]IPR000244Large ribosomal subunit protein bL9Family
QA [auth e]IPR020040Large ribosomal subunit protein uL6, alpha-beta domainDomain
QA [auth e]IPR036789Large ribosomal subunit protein uL6-like, alpha-beta domain superfamilyHomologous Superfamily
QA [auth e]IPR000702Large ribosomal subunit protein uL6-likeFamily
QA [auth e]IPR019906Large ribosomal subunit protein uL6, bacteriaFamily
QA [auth e]IPR002358Large ribosomal subunit protein uL6, conserved siteConserved Site
OA [auth c]IPR013005Large ribosomal subunit protein uL4-likeFamily
OA [auth c]IPR002136Large ribosomal subunit protein uL4Family
OA [auth c]IPR023574Large ribosomal subunit protein uL4 domain superfamilyHomologous Superfamily
NA [auth b]IPR019926Large ribosomal subunit protein uL3, conserved siteConserved Site
NA [auth b]IPR019927Large ribosomal subunit protein uL3, bacteria/organellaFamily
NA [auth b]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
NA [auth b]IPR000597Large ribosomal subunit protein uL3Family
MA [auth a]IPR005880Large ribosomal subunit protein uL2, bacteria/organellaFamily
MA [auth a]IPR022669Large ribosomal subunit protein uL2, C-terminalDomain
MA [auth a]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
MA [auth a]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
MA [auth a]IPR022671Large ribosomal subunit protein uL2, conserved siteConserved Site
MA [auth a]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
MA [auth a]IPR022666Large ribosomal subunit protein uL2, RNA-binding domainDomain
MA [auth a]IPR014726Large ribosomal subunit protein uL2, domain 3Homologous Superfamily
MA [auth a]IPR002171Large ribosomal subunit protein uL2Family
JA [auth W]IPR005704Small ribosomal subunit protein uS3, bacteriaFamily
JA [auth W]IPR001351Small ribosomal subunit protein uS3, C-terminalDomain
JA [auth W]IPR057258Small ribosomal subunit protein uS3Family
JA [auth W]IPR009019K homology domain superfamily, prokaryotic typeHomologous Superfamily
JA [auth W]IPR004087K Homology domainDomain
JA [auth W]IPR004044K Homology domain, type 2Domain
JA [auth W]IPR015946K homology domain-like, alpha/betaHomologous Superfamily
JA [auth W]IPR036419Ribosomal protein S3, C-terminal domain superfamilyHomologous Superfamily
JA [auth W]IPR018280Small ribosomal subunit protein uS3, conserved siteConserved Site
IA [auth T]IPR001911Small ribosomal subunit protein bS21Family
HA [auth S]IPR036510Small ribosomal subunit protein bS20 superfamilyHomologous Superfamily
HA [auth S]IPR002583Small ribosomal subunit protein bS20Family
FA [auth Q]IPR001648Small ribosomal subunit protein bS18Family
FA [auth Q]IPR018275Small ribosomal subunit protein bS18, conserved siteConserved Site
FA [auth Q]IPR036870Small ribosomal subunit protein bS18 superfamilyHomologous Superfamily
CA [auth N]IPR005290Small ribosomal subunit protein uS15, bacteriaFamily
CA [auth N]IPR009068uS15/NS1, RNA-binding domain superfamilyHomologous Superfamily
CA [auth N]IPR000589Small ribosomal subunit protein uS15Family
BA [auth M]IPR023053Small ribosomal subunit protein uS14, bacteriaFamily
BA [auth M]IPR001209Small ribosomal subunit protein uS14Family
BA [auth M]IPR018271Small ribosomal subunit protein uS14, conserved siteConserved Site
BA [auth M]IPR043140Small ribosomal subunit protein uS14 superfamilyHomologous Superfamily
Z [auth K]IPR006032Small ribosomal subunit protein uS12Family
Z [auth K]IPR005679Ribosomal protein uS12, bacteriaFamily
Z [auth K]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
X [auth I]IPR001848Small ribosomal subunit protein uS10Family
X [auth I]IPR027486Small ribosomal subunit protein uS10 domainDomain
X [auth I]IPR036838Small ribosomal subunit protein uS10 domain superfamilyHomologous Superfamily
X [auth I]IPR018268Small ribosomal subunit protein uS10, conserved siteConserved Site
W [auth H]IPR020574Small ribosomal subunit protein uS9, conserved siteConserved Site
W [auth H]IPR023035Small ribosomal subunit protein uS9, bacteria/plastidFamily
W [auth H]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
W [auth H]IPR000754Small ribosomal subunit protein uS9Family
W [auth H]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
V [auth G]IPR000630Small ribosomal subunit protein uS8Family
V [auth G]IPR047863Small ribosomal subunit protein uS8, conserved siteConserved Site
V [auth G]IPR035987Small ribosomal subunit protein uS8 superfamilyHomologous Superfamily
T [auth E]IPR020815Small ribosomal subunit protein bS6, conserved siteConserved Site
T [auth E]IPR000529Small ribosomal subunit protein bS6Family
T [auth E]IPR020814Small ribosomal subunit protein bS6, plastid/chloroplastFamily
T [auth E]IPR035980Small ribosomal subunit protein bS6 superfamilyHomologous Superfamily
T [auth E]IPR014717Translation elongation factor EF1B/small ribosomal subunit protein bS6Homologous Superfamily
JB [auth x],
R [auth AC]
IPR002150Large ribosomal subunit protein bL31 type A/BFamily
JB [auth x],
R [auth AC]
IPR027491Large ribosomal subunit protein bL31 type AFamily
JB [auth x],
R [auth AC]
IPR042105Large ribosomal subunit protein bL31 superfamilyHomologous Superfamily
JB [auth x],
R [auth AC]
IPR034704Large ribosomal subunit protein bL28/bL31-like superfamilyHomologous Superfamily
O [auth A]IPR005706Small ribosomal subunit protein uS2, bacteria/mitochondria/plastidFamily
O [auth A]IPR023591Small ribosomal subunit protein uS2, flavodoxin-like domain superfamilyHomologous Superfamily
O [auth A]IPR018130Small ribosomal subunit protein uS2, conserved siteConserved Site
O [auth A]IPR001865Small ribosomal subunit protein uS2Family
N [auth 9]IPR011130SecA, preprotein cross-linking domainDomain
N [auth 9]IPR011116SecA Wing/ScaffoldDomain
N [auth 9]IPR036266SecA, Wing/Scaffold superfamilyHomologous Superfamily
N [auth 9]IPR001650Helicase, C-terminal domain-likeDomain
N [auth 9]IPR000185Protein translocase subunit SecAFamily
N [auth 9]IPR014001Helicase superfamily 1/2, ATP-binding domainDomain
N [auth 9]IPR014018SecA motor DEADDomain
N [auth 9]IPR020937SecA conserved siteConserved Site
N [auth 9]IPR011115SecA DEAD-like, N-terminalDomain
N [auth 9]IPR044722SecA, C-terminal helicase domainDomain
N [auth 9]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
N [auth 9]IPR036670SecA, preprotein cross-linking domain superfamilyHomologous Superfamily
A [auth 0]IPR020939Large ribosomal subunit protein bL34, conserved siteConserved Site
A [auth 0]IPR000271Large ribosomal subunit protein bL34Family