9SJB | pdb_00009sjb

Solution structure of Clostridioides difficile CspB oligomer determined by CryoEM

External Resource: Annotation

Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, CA [auth AA], DA [auth BB], E, A, B, CA [auth AA], DA [auth BB], E, F, FA [auth EE], GA [auth FF], I, J, M [auth LL], N [auth M], Q [auth P], R [auth Q], U [auth T], V, Y, Z	Subtilisin-like serine germination related protease	peptidase activity catalytic activity, acting on a protein serine hydrolase activity serine-type peptidase activity hydrolase activity serine-type endopeptidase activity catalytic activity endopeptidase activity	proteolysis metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process	-
AA [auth YY], BA [auth ZZ], C, D, EA [auth CC], AA [auth YY], BA [auth ZZ], C, D, EA [auth CC], G, H, HA [auth GG], K, L, O [auth N], P [auth O], S [auth R], T [auth S], W, X	Subtilisin-like serine germination related protease	peptidase activity catalytic activity, acting on a protein serine hydrolase activity serine-type peptidase activity hydrolase activity serine-type endopeptidase activity catalytic activity endopeptidase activity	proteolysis metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, CA [auth AA], DA [auth BB], E, A, B, CA [auth AA], DA [auth BB], E, F, FA [auth EE], GA [auth FF], I, J, M [auth LL], N [auth M], Q [auth P], R [auth Q], U [auth T], V, Y, Z	IPR015500	Peptidase S8, subtilisin-related	Family
A, B, CA [auth AA], DA [auth BB], E, A, B, CA [auth AA], DA [auth BB], E, F, FA [auth EE], GA [auth FF], I, J, M [auth LL], N [auth M], Q [auth P], R [auth Q], U [auth T], V, Y, Z	IPR023828	Peptidase S8, subtilisin, Ser-active site	Active Site
A, B, CA [auth AA], DA [auth BB], E, A, B, CA [auth AA], DA [auth BB], E, F, FA [auth EE], GA [auth FF], I, J, M [auth LL], N [auth M], Q [auth P], R [auth Q], U [auth T], V, Y, Z	IPR036852	Peptidase S8/S53 domain superfamily	Homologous Superfamily
A, B, CA [auth AA], DA [auth BB], E, A, B, CA [auth AA], DA [auth BB], E, F, FA [auth EE], GA [auth FF], I, J, M [auth LL], N [auth M], Q [auth P], R [auth Q], U [auth T], V, Y, Z	IPR050131	Subtilisin-like serine protease	Family
A, B, CA [auth AA], DA [auth BB], E, A, B, CA [auth AA], DA [auth BB], E, F, FA [auth EE], GA [auth FF], I, J, M [auth LL], N [auth M], Q [auth P], R [auth Q], U [auth T], V, Y, Z	IPR041365	Csp protease B, prodomain	Domain
A, B, CA [auth AA], DA [auth BB], E, A, B, CA [auth AA], DA [auth BB], E, F, FA [auth EE], GA [auth FF], I, J, M [auth LL], N [auth M], Q [auth P], R [auth Q], U [auth T], V, Y, Z	IPR034045	CspA-like domain	Domain
A, B, CA [auth AA], DA [auth BB], E, A, B, CA [auth AA], DA [auth BB], E, F, FA [auth EE], GA [auth FF], I, J, M [auth LL], N [auth M], Q [auth P], R [auth Q], U [auth T], V, Y, Z	IPR000209	Peptidase S8/S53 domain	Domain
AA [auth YY], BA [auth ZZ], C, D, EA [auth CC], AA [auth YY], BA [auth ZZ], C, D, EA [auth CC], G, H, HA [auth GG], K, L, O [auth N], P [auth O], S [auth R], T [auth S], W, X	IPR015500	Peptidase S8, subtilisin-related	Family
AA [auth YY], BA [auth ZZ], C, D, EA [auth CC], AA [auth YY], BA [auth ZZ], C, D, EA [auth CC], G, H, HA [auth GG], K, L, O [auth N], P [auth O], S [auth R], T [auth S], W, X	IPR023828	Peptidase S8, subtilisin, Ser-active site	Active Site
AA [auth YY], BA [auth ZZ], C, D, EA [auth CC], AA [auth YY], BA [auth ZZ], C, D, EA [auth CC], G, H, HA [auth GG], K, L, O [auth N], P [auth O], S [auth R], T [auth S], W, X	IPR036852	Peptidase S8/S53 domain superfamily	Homologous Superfamily
AA [auth YY], BA [auth ZZ], C, D, EA [auth CC], AA [auth YY], BA [auth ZZ], C, D, EA [auth CC], G, H, HA [auth GG], K, L, O [auth N], P [auth O], S [auth R], T [auth S], W, X	IPR050131	Subtilisin-like serine protease	Family
AA [auth YY], BA [auth ZZ], C, D, EA [auth CC], AA [auth YY], BA [auth ZZ], C, D, EA [auth CC], G, H, HA [auth GG], K, L, O [auth N], P [auth O], S [auth R], T [auth S], W, X	IPR041365	Csp protease B, prodomain	Domain
AA [auth YY], BA [auth ZZ], C, D, EA [auth CC], AA [auth YY], BA [auth ZZ], C, D, EA [auth CC], G, H, HA [auth GG], K, L, O [auth N], P [auth O], S [auth R], T [auth S], W, X	IPR034045	CspA-like domain	Domain
AA [auth YY], BA [auth ZZ], C, D, EA [auth CC], AA [auth YY], BA [auth ZZ], C, D, EA [auth CC], G, H, HA [auth GG], K, L, O [auth N], P [auth O], S [auth R], T [auth S], W, X	IPR000209	Peptidase S8/S53 domain	Domain

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.