Annotations: 9SE7

Structure of Cytochrome C6 bound Photosystem I from Chlamydomonas reinhardtii at 2.07 A resolution

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Protein Modification Annotation

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	Photosystem I subunits PsaA/PsaB	8094461	3000850	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Photosystem I subunits PsaA/PsaB	8094499	3000850	SCOP2B (2022-06-29)
H [auth T]	SCOP2B Superfamily	Cytochrome c	8036389	3000815	SCOP2B (2022-06-29)
I [auth F]	SCOP2B Superfamily	Subunit III of photosystem I reaction centre, PsaF	8094180	3000813	SCOP2B (2022-06-29)
G [auth J]	SCOP2B Superfamily	Subunit IX of photosystem I reaction centre, PsaJ	8094723	3000824	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Electron transport accessory proteins	8094773	3000325	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Photosystem I subunit PsaD	8095071	3000951	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	4Fe-4S ferredoxins	8093860	3000020	SCOP2B (2022-06-29)
J [auth L]	SCOP2B Superfamily	Photosystem I reaction center subunit XI, PsaL	8097190	3000870	SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF00223	Photosystem I psaA/psaB protein (PsaA_PsaB)	Photosystem I psaA/psaB protein	-	Family
B	PF00223	Photosystem I psaA/psaB protein (PsaA_PsaB)	Photosystem I psaA/psaB protein	-	Family
G [auth J]	PF01701	Photosystem I reaction centre subunit IX / PsaJ (PSI_PsaJ)	Photosystem I reaction centre subunit IX / PsaJ	-	Family
F [auth I]	PF00796	Photosystem I reaction centre subunit VIII (PSI_8)	Photosystem I reaction centre subunit VIII	-	Family
C	PF12838	4Fe-4S dicluster domain (Fer4_7)	4Fe-4S dicluster domain	Superfamily includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Domain contai ...	Superfamily includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Domain contains two 4Fe4S clusters.	Domain
J [auth L]	PF02605	Photosystem I reaction centre subunit XI (PsaL)	Photosystem I reaction centre subunit XI	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Photosystem I P700 chlorophyll a apoprotein A1	cation binding magnesium ion binding ion binding binding metal ion binding small molecule binding oxidoreductase activity catalytic activity iron-sulfur cluster binding 4 iron, 4 sulfur cluster binding metal cluster binding chlorophyll binding tetrapyrrole binding electron transfer activity	photosynthesis metabolic process cellular process	chloroplast thylakoid membrane membrane-bounded organelle plastid membrane intracellular anatomical structure plastid organelle outer membrane plastid thylakoid membrane plastid thylakoid intracellular organelle organelle envelope cellular anatomical structure bounding membrane of organelle membraneless organelle plastid envelope chloroplast thylakoid membrane membrane-bounded organelle plastid membrane intracellular anatomical structure plastid organelle outer membrane plastid thylakoid membrane plastid thylakoid intracellular organelle organelle envelope cellular anatomical structure bounding membrane of organelle membraneless organelle plastid envelope thylakoid chloroplast membrane intracellular membraneless organelle intracellular membrane-bounded organelle thylakoid membrane organelle chloroplast thylakoid outer membrane cytoplasm photosynthetic membrane organelle membrane protein-containing complex photosystem photosystem I membrane protein complex
B	Photosystem I P700 chlorophyll a apoprotein A2	cation binding magnesium ion binding ion binding binding metal ion binding small molecule binding oxidoreductase activity catalytic activity iron-sulfur cluster binding 4 iron, 4 sulfur cluster binding metal cluster binding chlorophyll binding tetrapyrrole binding electron transfer activity	photosynthesis metabolic process cellular process	chloroplast thylakoid membrane membrane-bounded organelle plastid membrane intracellular anatomical structure plastid organelle outer membrane plastid thylakoid membrane plastid thylakoid intracellular organelle organelle envelope cellular anatomical structure bounding membrane of organelle membraneless organelle plastid envelope chloroplast thylakoid membrane membrane-bounded organelle plastid membrane intracellular anatomical structure plastid organelle outer membrane plastid thylakoid membrane plastid thylakoid intracellular organelle organelle envelope cellular anatomical structure bounding membrane of organelle membraneless organelle plastid envelope thylakoid chloroplast membrane intracellular membraneless organelle intracellular membrane-bounded organelle thylakoid membrane organelle chloroplast thylakoid outer membrane cytoplasm photosynthetic membrane organelle membrane protein-containing complex photosystem photosystem I membrane protein complex
H [auth T]	Cytochrome c6, chloroplastic	binding tetrapyrrole binding heme binding electron transfer activity cation binding transition metal ion binding iron ion binding ion binding metal ion binding small molecule binding	photosynthesis metabolic process cellular process	membrane-bounded organelle intracellular anatomical structure plastid intracellular membraneless organelle intracellular membrane-bounded organelle plastid thylakoid plastid thylakoid lumen intracellular organelle chloroplast thylakoid lumen cellular anatomical structure organelle chloroplast thylakoid membraneless organelle cytoplasm membrane-bounded organelle intracellular anatomical structure plastid intracellular membraneless organelle intracellular membrane-bounded organelle plastid thylakoid plastid thylakoid lumen intracellular organelle chloroplast thylakoid lumen cellular anatomical structure organelle chloroplast thylakoid membraneless organelle cytoplasm thylakoid lumen thylakoid chloroplast
I [auth F]	Photosystem I reaction center subunit III, chloroplastic	-	photosynthesis metabolic process cellular process	protein-containing complex photosystem intracellular anatomical structure photosystem I membrane membrane protein complex intracellular membraneless organelle intracellular organelle cellular anatomical structure organelle membraneless organelle photosynthetic membrane photosystem I reaction center thylakoid protein-containing complex photosystem intracellular anatomical structure photosystem I membrane membrane protein complex intracellular membraneless organelle intracellular organelle cellular anatomical structure organelle membraneless organelle photosynthetic membrane photosystem I reaction center thylakoid membrane-bounded organelle plastid intracellular membrane-bounded organelle plastid thylakoid plastid thylakoid lumen chloroplast thylakoid lumen chloroplast thylakoid cytoplasm thylakoid lumen chloroplast
G [auth J]	Photosystem I reaction center subunit IX	-	photosynthesis metabolic process cellular process	chloroplast thylakoid membrane membrane-bounded organelle plastid membrane intracellular anatomical structure plastid organelle outer membrane plastid thylakoid membrane plastid thylakoid intracellular organelle organelle envelope cellular anatomical structure bounding membrane of organelle membraneless organelle plastid envelope chloroplast thylakoid membrane membrane-bounded organelle plastid membrane intracellular anatomical structure plastid organelle outer membrane plastid thylakoid membrane plastid thylakoid intracellular organelle organelle envelope cellular anatomical structure bounding membrane of organelle membraneless organelle plastid envelope thylakoid chloroplast membrane intracellular membraneless organelle intracellular membrane-bounded organelle thylakoid membrane organelle chloroplast thylakoid outer membrane cytoplasm photosynthetic membrane organelle membrane protein-containing complex photosystem photosystem I membrane protein complex
F [auth I]	Photosystem I reaction center subunit VIII	-	photosynthesis metabolic process cellular process	chloroplast thylakoid membrane membrane-bounded organelle plastid membrane intracellular anatomical structure plastid organelle outer membrane plastid thylakoid membrane plastid thylakoid intracellular organelle organelle envelope cellular anatomical structure bounding membrane of organelle membraneless organelle plastid envelope chloroplast thylakoid membrane membrane-bounded organelle plastid membrane intracellular anatomical structure plastid organelle outer membrane plastid thylakoid membrane plastid thylakoid intracellular organelle organelle envelope cellular anatomical structure bounding membrane of organelle membraneless organelle plastid envelope thylakoid chloroplast membrane intracellular membraneless organelle intracellular membrane-bounded organelle thylakoid membrane organelle chloroplast thylakoid outer membrane cytoplasm photosynthetic membrane organelle membrane protein-containing complex photosystem photosystem I membrane protein complex
E	Photosystem I reaction center subunit IV, chloroplastic	-	photosynthesis metabolic process cellular process	protein-containing complex photosystem intracellular anatomical structure photosystem I membrane membrane protein complex intracellular membraneless organelle intracellular organelle cellular anatomical structure organelle membraneless organelle photosynthetic membrane photosystem I reaction center thylakoid protein-containing complex photosystem intracellular anatomical structure photosystem I membrane membrane protein complex intracellular membraneless organelle intracellular organelle cellular anatomical structure organelle membraneless organelle photosynthetic membrane photosystem I reaction center thylakoid chloroplast thylakoid membrane membrane-bounded organelle plastid membrane plastid organelle outer membrane plastid thylakoid membrane plastid thylakoid organelle envelope bounding membrane of organelle plastid envelope chloroplast intracellular membrane-bounded organelle thylakoid membrane chloroplast thylakoid outer membrane cytoplasm organelle membrane
D	Photosystem I reaction center subunit II, chloroplastic	-	photosynthesis metabolic process cellular process	protein-containing complex photosystem intracellular anatomical structure photosystem I membrane membrane protein complex intracellular membraneless organelle intracellular organelle cellular anatomical structure organelle membraneless organelle photosynthetic membrane photosystem I reaction center thylakoid protein-containing complex photosystem intracellular anatomical structure photosystem I membrane membrane protein complex intracellular membraneless organelle intracellular organelle cellular anatomical structure organelle membraneless organelle photosynthetic membrane photosystem I reaction center thylakoid chloroplast thylakoid membrane membrane-bounded organelle plastid membrane plastid organelle outer membrane plastid thylakoid membrane plastid thylakoid organelle envelope bounding membrane of organelle plastid envelope chloroplast intracellular membrane-bounded organelle thylakoid membrane chloroplast thylakoid outer membrane cytoplasm organelle membrane
C	Photosystem I iron-sulfur center	oxidoreductase activity catalytic activity iron-sulfur cluster binding binding 4 iron, 4 sulfur cluster binding metal cluster binding small molecule binding electron transfer activity cation binding ion binding metal ion binding	photosynthesis metabolic process cellular process photosynthesis, light reaction photosynthetic electron transport chain electron transport chain generation of precursor metabolites and energy photosynthetic electron transport in photosystem I	chloroplast thylakoid membrane membrane-bounded organelle plastid membrane intracellular anatomical structure plastid organelle outer membrane plastid thylakoid membrane plastid thylakoid intracellular organelle organelle envelope cellular anatomical structure bounding membrane of organelle membraneless organelle plastid envelope chloroplast thylakoid membrane membrane-bounded organelle plastid membrane intracellular anatomical structure plastid organelle outer membrane plastid thylakoid membrane plastid thylakoid intracellular organelle organelle envelope cellular anatomical structure bounding membrane of organelle membraneless organelle plastid envelope thylakoid chloroplast membrane intracellular membraneless organelle intracellular membrane-bounded organelle thylakoid membrane organelle chloroplast thylakoid outer membrane cytoplasm photosynthetic membrane organelle membrane protein-containing complex photosystem photosystem I membrane protein complex
J [auth L]	Photosystem I reaction center subunit XI, chloroplastic	-	photosynthesis metabolic process cellular process	protein-containing complex photosystem intracellular anatomical structure photosystem I membrane membrane protein complex intracellular membraneless organelle intracellular organelle cellular anatomical structure organelle membraneless organelle photosynthetic membrane photosystem I reaction center thylakoid

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR006243	Photosystem I PsaA	Family
A	IPR036408	Photosystem I PsaA/PsaB superfamily	Homologous Superfamily
A	IPR001280	Photosystem I PsaA/PsaB	Family
A	IPR020586	Photosystem I PsaA/PsaB, conserved site	Conserved Site
B	IPR036408	Photosystem I PsaA/PsaB superfamily	Homologous Superfamily
B	IPR001280	Photosystem I PsaA/PsaB	Family
B	IPR006244	Photosystem I PsaB	Family
B	IPR020586	Photosystem I PsaA/PsaB, conserved site	Conserved Site
H [auth T]	IPR036909	Cytochrome c-like domain superfamily	Homologous Superfamily
H [auth T]	IPR009056	Cytochrome c-like domain	Domain
H [auth T]	IPR023655	Cytochrome c6	Family
H [auth T]	IPR008168	Cytochrome c, class IC	Family
I [auth F]	IPR036577	Photosystem I PsaF, reaction centre subunit III superfamily	Homologous Superfamily
I [auth F]	IPR003666	Photosystem I PsaF, reaction centre subunit III	Family
G [auth J]	IPR002615	Photosystem I PsaJ, reaction centre subunit IX	Family
G [auth J]	IPR036062	Photosystem I PsaJ, reaction centre subunit IX superfamily	Homologous Superfamily
F [auth I]	IPR036357	Photosystem I reaction centre subunit VIII superfamily	Homologous Superfamily
F [auth I]	IPR001302	Photosystem I reaction centre subunit VIII	Family
E	IPR008990	Electron transport accessory-like domain superfamily	Homologous Superfamily
E	IPR003375	Photosystem I PsaE, reaction centre subunit IV	Family
D	IPR003685	Photosystem I PsaD	Family
D	IPR036579	Photosystem I, reaction centre subunit PsaD superfamily	Homologous Superfamily
C	IPR017900	4Fe-4S ferredoxin, iron-sulphur binding, conserved site	Conserved Site
C	IPR050157	Photosystem I iron-sulfur center	Family
C	IPR017896	4Fe-4S ferredoxin-type, iron-sulphur binding domain	Domain
C	IPR017491	Photosystem I protein PsaC	Family
J [auth L]	IPR003757	Photosystem I PsaL, reaction centre subunit XI	Domain
J [auth L]	IPR022980	Photosystem I, reaction centre subunit XI	Family
J [auth L]	IPR036592	Photosystem I PsaL, reaction centre subunit XI superfamily	Homologous Superfamily

Protein Modification Annotation

Modified Residue(s)
Chain	Residue(s)	Description
G [auth J]	ACE	: AA0041 , AA0042 , AA0043 , AA0044 , AA0045 , AA0046 , AA0049 , AA0050 , AA0051 , AA0052 , AA0053 , AA0054 , AA0354 : N-acetyl-L-alanine MOD:00050 , N-acetyl-L-aspartic acid MOD:00051 , N-acetyl-L-cysteine MOD:00052 , N-acetyl-S-archeol-cysteine MOD:00897 , N-acetyl-L-glutamic acid MOD:00053 , N-acetyl-L-glutamine MOD:00054 , N-acetylglycine MOD:00055 , N-acetyl-L-methionine MOD:00058 , N-acetyl-L-proline MOD:00059 , N-acetyl-L-serine MOD:00060 , N,O-diacetylated L-serine MOD:00648 , N-acetyl-L-threonine MOD:00061 , N-acetyl-L-tyrosine MOD:00062 , N-acetyl-L-valine MOD:00063 , N2-acetyl-L-arginine MOD:00359