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 9S3E | pdb_00009s3e

Universal Photosystem II Intermediate with Light-Dependent Water-Ferrocyanide Oxydo-reductase activity from Pisum sativum


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B SuperfamilyBacterial photosystem II reaction centre, L and M subunits 8098298 3000736 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyPhotosystem II antenna protein-like 8098290 3001674 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyBacterial photosystem II reaction centre, L and M subunits 8098294 3000736 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyCytochrome b559 subunits 8098498 3001602 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyCytochrome b559 subunits 8098832 3001602 SCOP2B (2022-06-29)
G [auth H]SCOP2B SuperfamilyPhotosystem II 10 kDa phosphoprotein PsbH 8100730 3001547 SCOP2B (2022-06-29)
I [auth J]SCOP2B SuperfamilyPhotosystem II reaction center protein J, PsbJ 8098500 3001534 SCOP2B (2022-06-29)
J [auth K]SCOP2B SuperfamilyPhotosystem II reaction center protein K, PsbK 8097598 3001585 SCOP2B (2022-06-29)
K [auth L]SCOP2B SuperfamilyPhotosystem II reaction center protein L, PsbL 8098790 3001523 SCOP2B (2022-06-29)
M [auth O]SCOP2B SuperfamilyOMPA barrel-like 8098512 3000208 SCOP2B (2022-06-29)
N [auth P]SCOP2B SuperfamilyMog1p/PsbP-like 8098524 3000396 SCOP2B (2022-06-29)
O [auth Q]SCOP2B SuperfamilyPsbQ-like 8100022 3000169 SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF00421Photosystem II protein (PSII)Photosystem II protein- Family
O [auth Q]PF05757Oxygen evolving enhancer protein 3 (PsbQ)Oxygen evolving enhancer protein 3- Family
Q [auth W]PF07123Photosystem II reaction centre W protein (PsbW) (PsbW)Photosystem II reaction centre W protein (PsbW)- Family
R [auth X]PF06596Photosystem II reaction centre X protein (PsbX) (PsbX)Photosystem II reaction centre X protein (PsbX)- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Photosystem II protein D1
Photosystem II CP47 reaction center protein
Photosystem II CP43 reaction center protein
Photosystem II D2 protein
Cytochrome b559 subunit alpha
Cytochrome b559 subunit beta
G [auth H]Photosystem II reaction center protein H
I [auth J]Photosystem II reaction center protein J-
J [auth K]Photosystem II reaction center protein K-
K [auth L]Photosystem II reaction center protein L-
M [auth O]Oxygen-evolving enhancer protein 1, chloroplastic
N [auth P]Oxygen-evolving enhancer protein 2, chloroplastic
O [auth Q]Oxygen-evolving enhancer protein 3
P [auth T]Photosystem II reaction center protein T-
Q [auth W]PSII 6.1 kDa protein-
R [auth X]Ultraviolet-B-repressible protein-
S [auth U]Photosystem II 5 kDa protein, chloroplastic- - -
H [auth I]Photosystem II reaction center protein I-
L [auth M]Photosystem II reaction center protein M-

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR005867Photosystem II protein D1Family
IPR036854Photosystem II protein D1/D2 superfamilyHomologous Superfamily
IPR000484Photosynthetic reaction centre, L/MFamily
IPR055265Photosynthetic reaction centre, L/M, conserved siteConserved Site
IPR055266Photosystem II protein D1/D2Family
IPR036001Photosystem antenna protein-like superfamilyHomologous Superfamily
IPR000932Photosystem antenna protein-likeFamily
IPR017486Photosystem II CP47 reaction centre proteinFamily
IPR036001Photosystem antenna protein-like superfamilyHomologous Superfamily
IPR000932Photosystem antenna protein-likeFamily
IPR005869Photosystem II CP43 reaction centre proteinFamily
IPR044900Photosystem II CP43 reaction centre protein superfamilyHomologous Superfamily
IPR005868Photosystem II D2Family
IPR036854Photosystem II protein D1/D2 superfamilyHomologous Superfamily
IPR000484Photosynthetic reaction centre, L/MFamily
IPR055265Photosynthetic reaction centre, L/M, conserved siteConserved Site
IPR055266Photosystem II protein D1/D2Family
IPR013081Photosystem II cytochrome b559, N-terminalDomain
IPR006217Photosystem II cytochrome b559, alpha subunitFamily
IPR013082Photosystem II cytochrome b559, alpha subunit, lumenal regionDomain
IPR037025Photosystem II cytochrome b559, alpha subunit superfamilyHomologous Superfamily
IPR006216Photosystem II cytochrome b559, conserved siteConserved Site
IPR006241Photosystem II cytochrome b559, beta subunitFamily
IPR013081Photosystem II cytochrome b559, N-terminalDomain
IPR006216Photosystem II cytochrome b559, conserved siteConserved Site
G [auth H]IPR036863Photosystem II reaction centre protein H superfamilyHomologous Superfamily
G [auth H]IPR001056Photosystem II reaction centre protein HFamily
I [auth J]IPR002682Photosystem II PsbJFamily
I [auth J]IPR037267Photosystem II PsbJ superfamilyHomologous Superfamily
J [auth K]IPR037270Photosystem II PsbK superfamilyHomologous Superfamily
J [auth K]IPR003687Photosystem II PsbKFamily
K [auth L]IPR003372Photosystem II PsbLFamily
K [auth L]IPR037266Photosystem II PsbL superfamilyHomologous Superfamily
M [auth O]IPR011250Outer membrane protein/outer membrane enzyme PagP-like, beta-barrel superfamilyHomologous Superfamily
M [auth O]IPR002628Photosystem II extrinsic protein OFamily
N [auth P]IPR002683PsbP, C-terminalDomain
N [auth P]IPR016123Mog1/PsbP, alpha/beta/alpha sandwichHomologous Superfamily
O [auth Q]IPR008797Oxygen-evolving enhancer protein 3Family
O [auth Q]IPR054099Oxygen-evolving enhancer protein 3, plantsFamily
O [auth Q]IPR023222PsbQ-like domain superfamilyHomologous Superfamily
P [auth T]IPR001743Photosystem II PsbTFamily
P [auth T]IPR037268Photosystem II PsbT superfamilyHomologous Superfamily
Q [auth W]IPR009806Photosystem II PsbW, class 2Family
R [auth X]IPR009518Photosystem II PsbXFamily
S [auth U]IPR040296Photosystem II 5kDa protein, chloroplasticFamily
H [auth I]IPR037271Photosystem II PsbI superfamilyHomologous Superfamily
H [auth I]IPR003686Photosystem II PsbIFamily
L [auth M]IPR007826Photosystem II PsbMFamily
L [auth M]IPR037269Photosystem II PsbM superfamilyHomologous Superfamily