9RPF | pdb_00009rpf

Assembly intermediate of human mitochondrial ribosome small subunit bound to METTL15 and mS37 (State M4)


Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
U [auth S]28S ribosomal protein S23, mitochondrial
I [auth F]28S ribosomal protein S7, mitochondrial
H [auth E]28S ribosomal protein S6, mitochondrial
G [auth D]28S ribosomal protein S5, mitochondrial
F [auth C]28S ribosomal protein S24, mitochondrial
E [auth B]28S ribosomal protein S2, mitochondrial
D [auth 3]Aurora kinase A-interacting protein-
FA [auth b]12S rRNA N4-methylcytidine (m4C) methyltransferase
EA [auth 4]Pentatricopeptide repeat domain-containing protein 3, mitochondrial
DA [auth V]28S ribosomal protein S27, mitochondrial
C [auth 2]Small ribosomal subunit protein mS37
CA [auth G]28S ribosomal protein S9, mitochondrial
BA [auth A]12S mitochondrial rRNA---
AA [auth Z]28S ribosomal protein S33, mitochondrial
Z [auth Y]28S ribosomal protein S31, mitochondrial
Y [auth X]28S ribosomal protein S29, mitochondrial
X [auth W]28S ribosomal protein S28, mitochondrial
W [auth U]28S ribosomal protein S26, mitochondrial
V [auth T]28S ribosomal protein S25, mitochondrial
T [auth R]28S ribosomal protein S22, mitochondrial
B [auth 1]28S ribosomal protein S35, mitochondrial
S [auth Q]Small ribosomal subunit protein bS21m
R [auth P]28S ribosomal protein S18c, mitochondrial
Q [auth O]28S ribosomal protein S18b, mitochondrial
P [auth N]28S ribosomal protein S17, mitochondrial
O [auth M]28S ribosomal protein S16, mitochondrial
N [auth L]28S ribosomal protein S15, mitochondrial
M [auth K]28S ribosomal protein S14, mitochondrial
L [auth J]28S ribosomal protein S12, mitochondrial
K [auth I]28S ribosomal protein S11, mitochondrial
J [auth H]28S ribosomal protein S10, mitochondrial-
A [auth 0]28S ribosomal protein S34, mitochondrial

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
U [auth S]IPR059242Small ribosomal subunit protein mS23, conserved domainDomain
U [auth S]IPR019520Small ribosomal subunit protein mS23, metazoaFamily
U [auth S]IPR023611Small ribosomal subunit protein mS23, conserved domain, metazoaDomain
I [auth F]IPR036823Small ribosomal subunit protein uS7 domain superfamilyHomologous Superfamily
I [auth F]IPR000235Small ribosomal subunit protein uS7Family
I [auth F]IPR023798Small ribosomal subunit protein uS7 domainDomain
H [auth E]IPR000529Small ribosomal subunit protein bS6Family
H [auth E]IPR035980Small ribosomal subunit protein bS6 superfamilyHomologous Superfamily
H [auth E]IPR014717Translation elongation factor EF1B/small ribosomal subunit protein bS6Homologous Superfamily
G [auth D]IPR000851Small ribosomal subunit protein uS5Family
G [auth D]IPR048584Small ribosomal subunit protein uS5m, N-terminal domainDomain
G [auth D]IPR005324Small ribosomal subunit protein uS5, C-terminalDomain
G [auth D]IPR013810Small ribosomal subunit protein uS5, N-terminalDomain
G [auth D]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
G [auth D]IPR018192Small ribosomal subunit protein uS5, N-terminal, conserved siteConserved Site
G [auth D]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
F [auth C]IPR026146Small ribosomal subunit protein uS3m, metazoanFamily
E [auth B]IPR005706Small ribosomal subunit protein uS2, bacteria/mitochondria/plastidFamily
E [auth B]IPR023591Small ribosomal subunit protein uS2, flavodoxin-like domain superfamilyHomologous Superfamily
E [auth B]IPR018130Small ribosomal subunit protein uS2, conserved siteConserved Site
E [auth B]IPR001865Small ribosomal subunit protein uS2Family
D [auth 3]IPR013177Ribosomal protein bS22, C-terminalDomain
FA [auth b]IPR029063S-adenosyl-L-methionine-dependent methyltransferase superfamilyHomologous Superfamily
FA [auth b]IPR002903Ribosomal RNA small subunit methyltransferase HFamily
FA [auth b]IPR023397S-adenosyl-L-methionine-dependent methyltransferase, MraW, recognition domain superfamilyHomologous Superfamily
EA [auth 4]IPR037387Pentatricopeptide repeat domain-containing protein 3Family
EA [auth 4]IPR011990Tetratricopeptide-like helical domain superfamilyHomologous Superfamily
EA [auth 4]IPR002885Pentatricopeptide repeatRepeat
EA [auth 4]IPR055063Small ribosomal subunit protein mS39, PPRRepeat
DA [auth V]IPR011990Tetratricopeptide-like helical domain superfamilyHomologous Superfamily
DA [auth V]IPR002885Pentatricopeptide repeatRepeat
DA [auth V]IPR019266Small ribosomal subunit protein mS27Family
DA [auth V]IPR034913mS27/PTCD2Family
C [auth 2]IPR010625CHCHDomain
C [auth 2]IPR009069Cysteine alpha-hairpin motif superfamilyHomologous Superfamily
C [auth 2]IPR033620Small ribosomal subunit protein mS37, metazoanFamily
CA [auth G]IPR020574Small ribosomal subunit protein uS9, conserved siteConserved Site
CA [auth G]IPR023035Small ribosomal subunit protein uS9, bacteria/plastidFamily
CA [auth G]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
CA [auth G]IPR000754Small ribosomal subunit protein uS9Family
CA [auth G]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
AA [auth Z]IPR013219Small ribosomal subunit protein mS33Family
Z [auth Y]IPR026299Mitochondrial 28S ribosomal protein S31Family
Y [auth X]IPR019368Small ribosomal subunit protein mS29Family
Y [auth X]IPR008092Small ribosomal subunit protein mS29, metazoaFamily
Y [auth X]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
X [auth W]IPR019375Small ribosomal subunit protein bS1mFamily
W [auth U]IPR026140Small ribosomal subunit protein mS26Family
V [auth T]IPR007741Ribosomal protein/NADH dehydrogenase domainDomain
V [auth T]IPR036249Thioredoxin-like superfamilyHomologous Superfamily
V [auth T]IPR040049Ribosomal subunit protein mS25/mL61, mitochondrialFamily
T [auth R]IPR019374Small ribosomal subunit protein mS22Family
B [auth 1]IPR039848Small ribosomal subunit protein mS35, mitochondrialFamily
B [auth 1]IPR019349Small ribosomal subunit protein mS35, mitochondrial, conserved domainDomain
S [auth Q]IPR038380Small ribosomal subunit protein bS21 superfamilyHomologous Superfamily
S [auth Q]IPR001911Small ribosomal subunit protein bS21Family
R [auth P]IPR001648Small ribosomal subunit protein bS18Family
R [auth P]IPR018275Small ribosomal subunit protein bS18, conserved siteConserved Site
R [auth P]IPR036870Small ribosomal subunit protein bS18 superfamilyHomologous Superfamily
Q [auth O]IPR040054Small ribosomal subunit protein mS40Family
Q [auth O]IPR001648Small ribosomal subunit protein bS18Family
Q [auth O]IPR036870Small ribosomal subunit protein bS18 superfamilyHomologous Superfamily
P [auth N]IPR039193Small ribosomal subunit protein uS17m, metazoaFamily
P [auth N]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
P [auth N]IPR000266Small ribosomal subunit protein uS17Family
O [auth M]IPR023803Small ribosomal subunit protein bS16 domain superfamilyHomologous Superfamily
O [auth M]IPR000307Small ribosomal subunit protein bS16Family
N [auth L]IPR005290Small ribosomal subunit protein uS15, bacteriaFamily
N [auth L]IPR009068uS15/NS1, RNA-binding domain superfamilyHomologous Superfamily
N [auth L]IPR052137Universal small ribosomal subunit uS15Family
N [auth L]IPR000589Small ribosomal subunit protein uS15Family
M [auth K]IPR001209Small ribosomal subunit protein uS14Family
L [auth J]IPR006032Small ribosomal subunit protein uS12Family
L [auth J]IPR005679Ribosomal protein uS12, bacteriaFamily
L [auth J]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
K [auth I]IPR001971Small ribosomal subunit protein uS11Family
K [auth I]IPR036967Small ribosomal subunit protein uS11 superfamilyHomologous Superfamily
K [auth I]IPR018102Small ribosomal subunit protein uS11, conserved siteConserved Site
J [auth H]IPR027486Small ribosomal subunit protein uS10 domainDomain
J [auth H]IPR040055Small ribosomal subunit protein uS10mFamily
J [auth H]IPR036838Small ribosomal subunit protein uS10 domain superfamilyHomologous Superfamily
A [auth 0]IPR032053Small ribosomal subunit protein mS34Family

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
U [auth S]Q9Y3D9
I [auth F]Q9Y2R9
H [auth E]P82932
G [auth D]P82675
E [auth B]Q9Y399
D [auth 3]Q9NWT8
FA [auth b]A6NJ78
EA [auth 4]Q96EY7
DA [auth V]Q92552
C [auth 2]Q96BP2
CA [auth G]P82933
AA [auth Z]Q9Y291
Z [auth Y]Q92665
Y [auth X]P51398
X [auth W]Q9Y2Q9
V [auth T]P82663
T [auth R]P82650
B [auth 1]P82673
S [auth Q]P82921
R [auth P]Q9Y3D5
Q [auth O]Q9Y676
P [auth N]Q9Y2R5
O [auth M]Q9Y3D3
N [auth L]P82914
M [auth K]O60783
L [auth J]O15235
K [auth I]P82912
J [auth H]P82664
A [auth 0]P82930

Protein Modification Annotation

Modified Residue(s)
ChainResidue(s)Description
C [auth 2]ACE AA0041 , AA0042 , AA0043 , AA0044 , AA0045 , AA0046 , AA0049 , AA0050 , AA0051 , AA0052 , AA0053 , AA0054 , AA0354

:  N-acetyl-L-alanine MOD:00050 , N-acetyl-L-aspartic acid MOD:00051 , N-acetyl-L-cysteine MOD:00052 , N-acetyl-S-archeol-cysteine MOD:00897 , N-acetyl-L-glutamic acid MOD:00053 , N-acetyl-L-glutamine MOD:00054 , N-acetylglycine MOD:00055 , N-acetyl-L-methionine MOD:00058 , N-acetyl-L-proline MOD:00059 , N-acetyl-L-serine MOD:00060 , N,O-diacetylated L-serine MOD:00648 , N-acetyl-L-threonine MOD:00061 , N-acetyl-L-tyrosine MOD:00062 , N-acetyl-L-valine MOD:00063 , N2-acetyl-L-arginine MOD:00359
BA [auth A]5MC Parent Component: C

AA0041 , AA0042 , AA0043 , AA0044 , AA0045 , AA0046 , AA0049 , AA0050 , AA0051 , AA0052 , AA0053 , AA0054 , AA0354

BA [auth A]5MU Parent Component: U

AA0041 , AA0042 , AA0043 , AA0044 , AA0045 , AA0046 , AA0049 , AA0050 , AA0051 , AA0052 , AA0053 , AA0054 , AA0354

BA [auth A]B8T Parent Component: C

AA0041 , AA0042 , AA0043 , AA0044 , AA0045 , AA0046 , AA0049 , AA0050 , AA0051 , AA0052 , AA0053 , AA0054 , AA0354

BA [auth A]MA6 Parent Component: A

AA0041 , AA0042 , AA0043 , AA0044 , AA0045 , AA0046 , AA0049 , AA0050 , AA0051 , AA0052 , AA0053 , AA0054 , AA0354

S [auth Q]ACE AA0041 , AA0042 , AA0043 , AA0044 , AA0045 , AA0046 , AA0049 , AA0050 , AA0051 , AA0052 , AA0053 , AA0054 , AA0354 , AA0041 , AA0042 , AA0043 , AA0044 , AA0045 , AA0046 , AA0049 , AA0050 , AA0051 , AA0052 , AA0053 , AA0054 , AA0354

:  N-acetyl-L-alanine MOD:00050 , N-acetyl-L-aspartic acid MOD:00051 , N-acetyl-L-cysteine MOD:00052 , N-acetyl-S-archeol-cysteine MOD:00897 , N-acetyl-L-glutamic acid MOD:00053 , N-acetyl-L-glutamine MOD:00054 , N-acetylglycine MOD:00055 , N-acetyl-L-methionine MOD:00058 , N-acetyl-L-proline MOD:00059 , N-acetyl-L-serine MOD:00060 , N,O-diacetylated L-serine MOD:00648 , N-acetyl-L-threonine MOD:00061 , N-acetyl-L-tyrosine MOD:00062 , N-acetyl-L-valine MOD:00063 , N2-acetyl-L-arginine MOD:00359 , N-acetyl-L-alanine MOD:00050 , N-acetyl-L-aspartic acid MOD:00051 , N-acetyl-L-cysteine MOD:00052 , N-acetyl-S-archeol-cysteine MOD:00897 , N-acetyl-L-glutamic acid MOD:00053 , N-acetyl-L-glutamine MOD:00054 , N-acetylglycine MOD:00055 , N-acetyl-L-methionine MOD:00058 , N-acetyl-L-proline MOD:00059 , N-acetyl-L-serine MOD:00060 , N,O-diacetylated L-serine MOD:00648 , N-acetyl-L-threonine MOD:00061 , N-acetyl-L-tyrosine MOD:00062 , N-acetyl-L-valine MOD:00063 , N2-acetyl-L-arginine MOD:00359
K [auth I]5F0 AA0041 , AA0042 , AA0043 , AA0044 , AA0045 , AA0046 , AA0049 , AA0050 , AA0051 , AA0052 , AA0053 , AA0054 , AA0354 , AA0041 , AA0042 , AA0043 , AA0044 , AA0045 , AA0046 , AA0049 , AA0050 , AA0051 , AA0052 , AA0053 , AA0054 , AA0354