Annotations: 9R35

Crystal structure of the Pseudomonas putida Xre-RES toxin-antitoxin complex bound to promoter DNA

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
X	RVP	e9r35X1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: RVP	ECOD (v294.2)
W	RVP	e9r35W1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: RVP	ECOD (v294.2)
U	RVP	e9r35U1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: RVP	ECOD (v294.2)
T	RVP	e9r35T1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: RVP	ECOD (v294.2)
R	RVP	e9r35R1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: RVP	ECOD (v294.2)
Q	RVP	e9r35Q1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: RVP	ECOD (v294.2)
O	RVP	e9r35O1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: RVP	ECOD (v294.2)
N	RVP	e9r35N1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: RVP	ECOD (v294.2)
L	RVP	e9r35L1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: RVP	ECOD (v294.2)
K	RVP	e9r35K1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: RVP	ECOD (v294.2)
I	RVP	e9r35I1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: RVP	ECOD (v294.2)
H	RVP	e9r35H1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: RVP	ECOD (v294.2)
F	RVP	e9r35F1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: RVP	ECOD (v294.2)
E	RVP	e9r35E1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: RVP	ECOD (v294.2)
C	RVP	e9r35C1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: RVP	ECOD (v294.2)
B	RVP	e9r35B1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: RVP	ECOD (v294.2)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, D, G, J, M A, D, G, J, M, P, S, V	PF08808	RES domain (RES)	RES domain	This presumed domain contains 3 highly conserved polar groups that could form an active site. These are an arginine, glutamate and serine, hence the RES domain. The domain is found widely distributed in bacteria. The domain is about 150 residues in l ...	This presumed domain contains 3 highly conserved polar groups that could form an active site. These are an arginine, glutamate and serine, hence the RES domain. The domain is found widely distributed in bacteria. The domain is about 150 residues in length.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
AA [auth c], CA [auth e], EA [auth g], Z [auth b]	DNA forward (30-mer)	-	-	-
BA [auth d], DA [auth f], FA [auth h], Y [auth a]	DNA reverse (30-mer)	-	-	-
B, C, E, F, H B, C, E, F, H, I, K, L, N, O, Q, R, T, U, W, X	XRE anti-toxin	DNA binding binding nucleic acid binding	-	-
A, D, G, J, M A, D, G, J, M, P, S, V	Toxin Res	transferase activity nucleotidyltransferase activity catalytic activity transferase activity, transferring phosphorus-containing groups	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B, C, E, F, H B, C, E, F, H, I, K, L, N, O, Q, R, T, U, W, X	IPR011979	Antitoxin Xre	Family
B, C, E, F, H B, C, E, F, H, I, K, L, N, O, Q, R, T, U, W, X	IPR024467	Antitoxin Xre/MbcA/ParS-like, toxin-binding domain	Domain
B, C, E, F, H B, C, E, F, H, I, K, L, N, O, Q, R, T, U, W, X	IPR046847	Antitoxin Xre-like, helix-turn-helix domain	Domain
A, D, G, J, M A, D, G, J, M, P, S, V	IPR014914	RES domain	Domain

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

9R35 | pdb_00009r35

Crystal structure of the Pseudomonas putida Xre-RES toxin-antitoxin complex bound to promoter DNA

External Resource: Annotation

Domain Annotation: ECOD Classification ECOD Database Homepage

Protein Family Annotation Pfam Database Homepage

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

InterPro: Protein Family Classification InterPro Database Homepage