9QPQ | pdb_00009qpq

The structure of the COPI leaf bound to GOLPH3

External Resource: Annotation


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
R [auth T]SCOP2B SuperfamilyRas-like P-loop GTPases 8089848 3002022 SCOP2B (2022-06-29)
Q [auth S]SCOP2B SuperfamilyRas-like P-loop GTPases 8089848 3002022 SCOP2B (2022-06-29)
P [auth R]SCOP2B SuperfamilyRas-like P-loop GTPases 8089848 3002022 SCOP2B (2022-06-29)
K [auth L]SCOP2B SuperfamilySNARE-like 8082715 3001113 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyWinged helix DNA-binding domain 8106701 3000034 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
L [auth M]RVPe9qpqM1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: RVPECOD (v294.2)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
O [auth P]PF01217Clathrin adaptor complex small chain (Clat_adaptor_s)Clathrin adaptor complex small chainDomain
L [auth M],
M [auth N],
N [auth O]		PF01602Adaptin N terminal region (Adaptin_N)Adaptin N terminal region- Repeat
K [auth L]PF01217Clathrin adaptor complex small chain (Clat_adaptor_s)Clathrin adaptor complex small chainDomain
G [auth H],
H [auth I],
I [auth J],
J [auth K]		PF01602Adaptin N terminal region (Adaptin_N)Adaptin N terminal region- Repeat
G [auth H],
H [auth I],
I [auth J],
J [auth K]		PF07718Coatomer beta C-terminal region (Coatamer_beta_C)Coatomer beta C-terminal regionThis family is found at the C-terminus of the coatamer beta subunit proteins (Beta-coat proteins). This C-terminal domain probably adapts the function of the N-terminal Pfam:PF01602 domain. Domain
G [auth H],
H [auth I],
I [auth J],
J [auth K]		PF14806Coatomer beta subunit appendage platform (Coatomer_b_Cpla)Coatomer beta subunit appendage platformThis family is found at the C-terminus of the coatamer beta subunit proteins (Beta-coat proteins). It is a platform domain on the appendage that carries a highly conserved tryptophan. Domain
E [auth F],
F [auth G]		PF04053COPA/B second beta-propeller (B-prop_COPA_B_2nd)COPA/B second beta-propeller- Repeat
E [auth F],
F [auth G]		PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
E [auth F],
F [auth G]		PF23953COPA/B TPR domain (TPR_COPA_B)COPA/B TPR domain- Repeat
C [auth D],
D [auth E]		PF04053COPA/B second beta-propeller (B-prop_COPA_B_2nd)COPA/B second beta-propeller- Repeat
C [auth D],
D [auth E]		PF06957Coatomer (COPI) alpha subunit C-terminus (COPI_C)Coatomer (COPI) alpha subunit C-terminus- Repeat
C [auth D],
D [auth E]		PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
C [auth D],
D [auth E]		PF23953COPA/B TPR domain (TPR_COPA_B)COPA/B TPR domain- Repeat
A, B
PF05719Golgi phosphoprotein 3 (GPP34) (GPP34)Golgi phosphoprotein 3 (GPP34)- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
P [auth R],
Q [auth S],
R [auth T]		ADP-ribosylation factor 1
O [auth P]Coatomer subunit zeta-1-
L [auth M],
M [auth N],
N [auth O]		Coatomer subunit gamma-1
K [auth L]Coatomer subunit delta-
G [auth H],
H [auth I],
I [auth J],
J [auth K]		Coatomer subunit beta
E [auth F],
F [auth G]		Coatomer subunit beta'
C [auth D],
D [auth E]		Coatomer subunit alpha
A, B
Golgi phosphoprotein 3

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
P [auth R],
Q [auth S],
R [auth T]		IPR045872ADP-ribosylation factor 1-5Family
P [auth R],
Q [auth S],
R [auth T]		IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
P [auth R],
Q [auth S],
R [auth T]		IPR005225Small GTP-binding domainDomain
P [auth R],
Q [auth S],
R [auth T]		IPR024156Small GTPase superfamily, ARF typeFamily
P [auth R],
Q [auth S],
R [auth T]		IPR006689Small GTPase superfamily, ARF/SAR typeFamily
O [auth P]IPR000804Clathrin adaptor complex, small chainConserved Site
O [auth P]IPR022775AP complex, mu/sigma subunitDomain
O [auth P]IPR039652Coatomer subunit zetaFamily
O [auth P]IPR011012Longin-like domain superfamilyHomologous Superfamily
L [auth M],
M [auth N],
N [auth O]		IPR016024Armadillo-type foldHomologous Superfamily
L [auth M],
M [auth N],
N [auth O]		IPR002553Clathrin/coatomer adaptor, adaptin-like, N-terminalDomain
L [auth M],
M [auth N],
N [auth O]		IPR013040Coatomer, gamma subunit, appendage, Ig-like subdomainDomain
L [auth M],
M [auth N],
N [auth O]		IPR013041Clathrin adaptor, appendage, Ig-like subdomain superfamilyHomologous Superfamily
L [auth M],
M [auth N],
N [auth O]		IPR011989Armadillo-like helicalHomologous Superfamily
L [auth M],
M [auth N],
N [auth O]		IPR032154Coatomer subunit gamma, C-terminalDomain
L [auth M],
M [auth N],
N [auth O]		IPR017106Coatomer gamma subunitFamily
L [auth M],
M [auth N],
N [auth O]		IPR037067Coatomer, gamma subunit, appendage domain superfamilyHomologous Superfamily
L [auth M],
M [auth N],
N [auth O]		IPR012295TBP domain superfamilyHomologous Superfamily
L [auth M],
M [auth N],
N [auth O]		IPR009028Coatomer/calthrin adaptor appendage, C-terminal subdomainHomologous Superfamily
K [auth L]IPR011012Longin-like domain superfamilyHomologous Superfamily
K [auth L]IPR027059Coatomer delta subunitFamily
K [auth L]IPR022775AP complex, mu/sigma subunitDomain
K [auth L]IPR036168AP-2 complex subunit mu, C-terminal superfamilyHomologous Superfamily
K [auth L]IPR028565Mu homology domainDomain
G [auth H],
H [auth I],
I [auth J],
J [auth K]		IPR016460Coatomer beta subunit (COPB1)Family
G [auth H],
H [auth I],
I [auth J],
J [auth K]		IPR016024Armadillo-type foldHomologous Superfamily
G [auth H],
H [auth I],
I [auth J],
J [auth K]		IPR002553Clathrin/coatomer adaptor, adaptin-like, N-terminalDomain
G [auth H],
H [auth I],
I [auth J],
J [auth K]		IPR011710Coatomer beta subunit, C-terminalDomain
G [auth H],
H [auth I],
I [auth J],
J [auth K]		IPR029446Coatomer beta subunit, appendage platform domainDomain
G [auth H],
H [auth I],
I [auth J],
J [auth K]		IPR011989Armadillo-like helicalHomologous Superfamily
E [auth F],
F [auth G]		IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
E [auth F],
F [auth G]		IPR016453Coatomer beta' subunit (COPB2)Family
E [auth F],
F [auth G]		IPR050844Coatomer complex subunitFamily
E [auth F],
F [auth G]		IPR020472PAC1/LIS1-like, WD-40 repeatRepeat
E [auth F],
F [auth G]		IPR001680WD40 repeatRepeat
E [auth F],
F [auth G]		IPR006692COPA/B, second beta-propeller domainDomain
E [auth F],
F [auth G]		IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
E [auth F],
F [auth G]		IPR056176COPA/B, TPR domainDomain
C [auth D],
D [auth E]		IPR019775WD40 repeat, conserved siteConserved Site
C [auth D],
D [auth E]		IPR016391Coatomer subunit alphaFamily
C [auth D],
D [auth E]		IPR020472PAC1/LIS1-like, WD-40 repeatRepeat
C [auth D],
D [auth E]		IPR010714Coatomer, alpha subunit, C-terminalDomain
C [auth D],
D [auth E]		IPR006692COPA/B, second beta-propeller domainDomain
C [auth D],
D [auth E]		IPR047312Coatomer subunit alpha, WD Associated RegionDomain
C [auth D],
D [auth E]		IPR011048Cytochrome cd1-nitrite reductase-like, haem d1 domain superfamilyHomologous Superfamily
C [auth D],
D [auth E]		IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
C [auth D],
D [auth E]		IPR056176COPA/B, TPR domainDomain
C [auth D],
D [auth E]		IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
C [auth D],
D [auth E]		IPR050844Coatomer complex subunitFamily
C [auth D],
D [auth E]		IPR001680WD40 repeatRepeat
A, B
IPR008628Golgi phosphoprotein 3-likeFamily
A, B
IPR038261Golgi phosphoprotein 3-like domain superfamilyHomologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
P [auth R],
Q [auth S],
R [auth T]		:  P84077
A, B
:  Q9H4A6